Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03033

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_03031 and MIT1002_03032 overlap by 4 nucleotidesMIT1002_03032 and MIT1002_03033 overlap by 4 nucleotidesMIT1002_03033 and MIT1002_03034 overlap by 4 nucleotidesMIT1002_03034 and MIT1002_03035 are separated by 491 nucleotides MIT1002_03031: MIT1002_03031 - Peptidoglycan synthase FtsI precursor, at 3,378,575 to 3,380,350 _03031 MIT1002_03032: MIT1002_03032 - Cell division protein FtsL, at 3,380,347 to 3,380,682 _03032 MIT1002_03033: MIT1002_03033 - Ribosomal RNA small subunit methyltransferase H, at 3,380,679 to 3,381,620 _03033 MIT1002_03034: MIT1002_03034 - cell division protein MraZ, at 3,381,617 to 3,382,075 _03034 MIT1002_03035: MIT1002_03035 - hypothetical protein, at 3,382,567 to 3,383,391 _03035 Position (kb) 3380 3381 3382Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3380.680 kb on - strandat 3380.792 kb on - strand, within MIT1002_03033at 3380.884 kb on - strand, within MIT1002_03033at 3381.119 kb on - strand, within MIT1002_03033at 3381.179 kb on - strand, within MIT1002_03033at 3381.220 kb on - strand, within MIT1002_03033at 3381.240 kb on - strand, within MIT1002_03033at 3381.257 kb on - strand, within MIT1002_03033at 3381.682 kb on - strand, within MIT1002_03034at 3381.691 kb on - strand, within MIT1002_03034at 3381.938 kb on - strand, within MIT1002_03034at 3381.938 kb on - strand, within MIT1002_03034at 3381.953 kb on - strand, within MIT1002_03034at 3381.964 kb on - strand, within MIT1002_03034at 3381.974 kb on - strand, within MIT1002_03034at 3381.974 kb on - strand, within MIT1002_03034at 3382.224 kb on + strandat 3382.237 kb on + strandat 3382.237 kb on + strandat 3382.290 kb on + strandat 3382.292 kb on - strandat 3382.421 kb on - strandat 3382.462 kb on - strandat 3382.465 kb on + strandat 3382.503 kb on + strandat 3382.506 kb on - strandat 3382.606 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6
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3,380,680 - -0.3
3,380,792 - MIT1002_03033 0.12 -2.0
3,380,884 - MIT1002_03033 0.22 -0.6
3,381,119 - MIT1002_03033 0.47 -1.4
3,381,179 - MIT1002_03033 0.53 -0.4
3,381,220 - MIT1002_03033 0.57 -1.9
3,381,240 - MIT1002_03033 0.60 -0.4
3,381,257 - MIT1002_03033 0.61 -1.7
3,381,682 - MIT1002_03034 0.14 +0.5
3,381,691 - MIT1002_03034 0.16 +0.3
3,381,938 - MIT1002_03034 0.70 +2.5
3,381,938 - MIT1002_03034 0.70 +1.6
3,381,953 - MIT1002_03034 0.73 -2.6
3,381,964 - MIT1002_03034 0.76 -2.9
3,381,974 - MIT1002_03034 0.78 -4.0
3,381,974 - MIT1002_03034 0.78 -3.8
3,382,224 + +0.3
3,382,237 + -1.0
3,382,237 + -1.9
3,382,290 + -2.0
3,382,292 - -0.3
3,382,421 - -2.1
3,382,462 - -0.9
3,382,465 + -1.8
3,382,503 + -3.0
3,382,506 - -1.9
3,382,606 + +0.1

Or see this region's nucleotide sequence