Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02831

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_02830 and MIT1002_02831 are separated by 436 nucleotidesMIT1002_02831 and MIT1002_02832 are separated by 282 nucleotides MIT1002_02830: MIT1002_02830 - Chemotaxis protein CheV, at 3,136,289 to 3,137,248 _02830 MIT1002_02831: MIT1002_02831 - Isocitrate lyase, at 3,137,685 to 3,139,280 _02831 MIT1002_02832: MIT1002_02832 - Nodulation protein D 2, at 3,139,563 to 3,140,507 _02832 Position (kb) 3137 3138 3139 3140Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 3136.834 kb on - strand, within MIT1002_02830at 3137.094 kb on + strand, within MIT1002_02830at 3137.097 kb on - strand, within MIT1002_02830at 3137.231 kb on - strandat 3137.287 kb on - strandat 3137.309 kb on + strandat 3137.334 kb on - strandat 3137.676 kb on - strandat 3137.721 kb on + strandat 3137.721 kb on + strandat 3137.754 kb on + strandat 3137.787 kb on + strandat 3137.787 kb on + strandat 3137.788 kb on - strandat 3137.808 kb on + strandat 3137.808 kb on + strandat 3137.816 kb on - strandat 3137.816 kb on - strandat 3137.816 kb on - strandat 3137.820 kb on + strandat 3137.881 kb on + strand, within MIT1002_02831at 3137.948 kb on + strand, within MIT1002_02831at 3137.955 kb on + strand, within MIT1002_02831at 3137.978 kb on - strand, within MIT1002_02831at 3138.000 kb on - strand, within MIT1002_02831at 3138.010 kb on + strand, within MIT1002_02831at 3138.068 kb on - strand, within MIT1002_02831at 3138.080 kb on + strand, within MIT1002_02831at 3138.088 kb on - strand, within MIT1002_02831at 3138.088 kb on - strand, within MIT1002_02831at 3138.108 kb on - strand, within MIT1002_02831at 3138.221 kb on - strand, within MIT1002_02831at 3138.292 kb on - strand, within MIT1002_02831at 3138.302 kb on - strand, within MIT1002_02831at 3138.338 kb on + strand, within MIT1002_02831at 3138.403 kb on - strand, within MIT1002_02831at 3138.426 kb on - strand, within MIT1002_02831at 3138.441 kb on + strand, within MIT1002_02831at 3138.472 kb on + strand, within MIT1002_02831at 3138.472 kb on + strand, within MIT1002_02831at 3138.472 kb on + strand, within MIT1002_02831at 3138.472 kb on + strand, within MIT1002_02831at 3138.480 kb on - strand, within MIT1002_02831at 3138.528 kb on - strand, within MIT1002_02831at 3138.533 kb on - strand, within MIT1002_02831at 3138.538 kb on - strand, within MIT1002_02831at 3138.538 kb on - strand, within MIT1002_02831at 3138.538 kb on - strand, within MIT1002_02831at 3138.538 kb on - strand, within MIT1002_02831at 3138.617 kb on + strand, within MIT1002_02831at 3138.617 kb on + strand, within MIT1002_02831at 3138.625 kb on - strand, within MIT1002_02831at 3138.625 kb on - strand, within MIT1002_02831at 3138.625 kb on - strand, within MIT1002_02831at 3138.625 kb on - strand, within MIT1002_02831at 3138.669 kb on + strand, within MIT1002_02831at 3138.669 kb on + strand, within MIT1002_02831at 3138.669 kb on + strand, within MIT1002_02831at 3138.669 kb on + strand, within MIT1002_02831at 3138.677 kb on - strand, within MIT1002_02831at 3138.684 kb on + strand, within MIT1002_02831at 3138.687 kb on - strand, within MIT1002_02831at 3138.692 kb on - strand, within MIT1002_02831at 3138.692 kb on - strand, within MIT1002_02831at 3138.715 kb on + strand, within MIT1002_02831at 3138.746 kb on + strand, within MIT1002_02831at 3138.773 kb on + strand, within MIT1002_02831at 3138.781 kb on - strand, within MIT1002_02831at 3138.781 kb on - strand, within MIT1002_02831at 3138.781 kb on - strand, within MIT1002_02831at 3138.918 kb on + strand, within MIT1002_02831at 3138.997 kb on - strand, within MIT1002_02831at 3139.015 kb on + strand, within MIT1002_02831at 3139.051 kb on + strand, within MIT1002_02831at 3139.058 kb on + strand, within MIT1002_02831at 3139.059 kb on - strand, within MIT1002_02831at 3139.123 kb on + strandat 3139.123 kb on + strandat 3139.149 kb on + strandat 3139.149 kb on + strandat 3139.149 kb on + strandat 3139.157 kb on - strandat 3139.157 kb on - strandat 3139.157 kb on - strandat 3139.157 kb on - strandat 3139.183 kb on + strandat 3139.183 kb on + strandat 3139.183 kb on + strandat 3139.183 kb on + strandat 3139.191 kb on - strandat 3139.191 kb on - strandat 3139.250 kb on + strandat 3139.250 kb on + strandat 3139.295 kb on + strandat 3139.311 kb on + strandat 3139.639 kb on + strandat 3139.654 kb on + strandat 3139.654 kb on + strandat 3139.662 kb on - strand, within MIT1002_02832at 3139.673 kb on + strand, within MIT1002_02832at 3139.740 kb on - strand, within MIT1002_02832at 3139.740 kb on - strand, within MIT1002_02832at 3139.750 kb on - strand, within MIT1002_02832at 3139.770 kb on + strand, within MIT1002_02832at 3139.788 kb on + strand, within MIT1002_02832at 3139.807 kb on + strand, within MIT1002_02832at 3139.807 kb on + strand, within MIT1002_02832at 3139.815 kb on - strand, within MIT1002_02832at 3139.815 kb on - strand, within MIT1002_02832at 3139.815 kb on - strand, within MIT1002_02832at 3139.882 kb on - strand, within MIT1002_02832at 3139.936 kb on + strand, within MIT1002_02832at 3139.991 kb on + strand, within MIT1002_02832at 3139.991 kb on + strand, within MIT1002_02832at 3140.183 kb on - strand, within MIT1002_02832at 3140.229 kb on - strand, within MIT1002_02832

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6
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3,136,834 - MIT1002_02830 0.57 -1.7
3,137,094 + MIT1002_02830 0.84 +0.1
3,137,097 - MIT1002_02830 0.84 -0.4
3,137,231 - -2.4
3,137,287 - -0.6
3,137,309 + -2.4
3,137,334 - -0.4
3,137,676 - -3.9
3,137,721 + -1.1
3,137,721 + -3.3
3,137,754 + -0.4
3,137,787 + -2.7
3,137,787 + -2.8
3,137,788 - -2.3
3,137,808 + -0.7
3,137,808 + -4.8
3,137,816 - -1.5
3,137,816 - +0.9
3,137,816 - -1.9
3,137,820 + +0.1
3,137,881 + MIT1002_02831 0.12 -3.0
3,137,948 + MIT1002_02831 0.16 -3.8
3,137,955 + MIT1002_02831 0.17 -5.6
3,137,978 - MIT1002_02831 0.18 -1.3
3,138,000 - MIT1002_02831 0.20 +0.9
3,138,010 + MIT1002_02831 0.20 -2.5
3,138,068 - MIT1002_02831 0.24 -2.1
3,138,080 + MIT1002_02831 0.25 -0.7
3,138,088 - MIT1002_02831 0.25 -3.1
3,138,088 - MIT1002_02831 0.25 -2.3
3,138,108 - MIT1002_02831 0.27 +0.9
3,138,221 - MIT1002_02831 0.34 -3.1
3,138,292 - MIT1002_02831 0.38 -2.8
3,138,302 - MIT1002_02831 0.39 -0.8
3,138,338 + MIT1002_02831 0.41 -4.1
3,138,403 - MIT1002_02831 0.45 -2.2
3,138,426 - MIT1002_02831 0.46 -0.3
3,138,441 + MIT1002_02831 0.47 -5.4
3,138,472 + MIT1002_02831 0.49 -3.1
3,138,472 + MIT1002_02831 0.49 -0.6
3,138,472 + MIT1002_02831 0.49 -3.3
3,138,472 + MIT1002_02831 0.49 -0.8
3,138,480 - MIT1002_02831 0.50 -5.1
3,138,528 - MIT1002_02831 0.53 -3.4
3,138,533 - MIT1002_02831 0.53 -4.0
3,138,538 - MIT1002_02831 0.53 +0.6
3,138,538 - MIT1002_02831 0.53 -5.6
3,138,538 - MIT1002_02831 0.53 +0.1
3,138,538 - MIT1002_02831 0.53 -2.0
3,138,617 + MIT1002_02831 0.58 -3.1
3,138,617 + MIT1002_02831 0.58 -1.6
3,138,625 - MIT1002_02831 0.59 -1.9
3,138,625 - MIT1002_02831 0.59 -2.0
3,138,625 - MIT1002_02831 0.59 -2.3
3,138,625 - MIT1002_02831 0.59 +0.1
3,138,669 + MIT1002_02831 0.62 -3.3
3,138,669 + MIT1002_02831 0.62 -3.6
3,138,669 + MIT1002_02831 0.62 -2.5
3,138,669 + MIT1002_02831 0.62 -2.9
3,138,677 - MIT1002_02831 0.62 -2.6
3,138,684 + MIT1002_02831 0.63 -3.3
3,138,687 - MIT1002_02831 0.63 -2.7
3,138,692 - MIT1002_02831 0.63 -2.5
3,138,692 - MIT1002_02831 0.63 -4.8
3,138,715 + MIT1002_02831 0.65 -1.8
3,138,746 + MIT1002_02831 0.66 -2.9
3,138,773 + MIT1002_02831 0.68 +0.6
3,138,781 - MIT1002_02831 0.69 -0.7
3,138,781 - MIT1002_02831 0.69 -3.7
3,138,781 - MIT1002_02831 0.69 -0.3
3,138,918 + MIT1002_02831 0.77 -6.4
3,138,997 - MIT1002_02831 0.82 -3.3
3,139,015 + MIT1002_02831 0.83 -3.5
3,139,051 + MIT1002_02831 0.86 -3.4
3,139,058 + MIT1002_02831 0.86 -1.3
3,139,059 - MIT1002_02831 0.86 -2.9
3,139,123 + -4.6
3,139,123 + -1.6
3,139,149 + -0.1
3,139,149 + -4.4
3,139,149 + -4.5
3,139,157 - -4.0
3,139,157 - -1.6
3,139,157 - -0.3
3,139,157 - -0.9
3,139,183 + -3.4
3,139,183 + -2.0
3,139,183 + -1.7
3,139,183 + -0.3
3,139,191 - -2.4
3,139,191 - -3.5
3,139,250 + -1.3
3,139,250 + -4.0
3,139,295 + +0.9
3,139,311 + -0.6
3,139,639 + -2.0
3,139,654 + -3.0
3,139,654 + -0.1
3,139,662 - MIT1002_02832 0.10 -0.7
3,139,673 + MIT1002_02832 0.12 -1.0
3,139,740 - MIT1002_02832 0.19 -2.3
3,139,740 - MIT1002_02832 0.19 -2.0
3,139,750 - MIT1002_02832 0.20 -1.5
3,139,770 + MIT1002_02832 0.22 -3.5
3,139,788 + MIT1002_02832 0.24 -1.6
3,139,807 + MIT1002_02832 0.26 -3.8
3,139,807 + MIT1002_02832 0.26 -2.7
3,139,815 - MIT1002_02832 0.27 -2.5
3,139,815 - MIT1002_02832 0.27 -0.4
3,139,815 - MIT1002_02832 0.27 -3.2
3,139,882 - MIT1002_02832 0.34 +0.9
3,139,936 + MIT1002_02832 0.39 -1.3
3,139,991 + MIT1002_02832 0.45 -3.6
3,139,991 + MIT1002_02832 0.45 -0.4
3,140,183 - MIT1002_02832 0.66 -1.6
3,140,229 - MIT1002_02832 0.70 +0.3

Or see this region's nucleotide sequence