Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02812

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_02811 and MIT1002_02812 are separated by 55 nucleotidesMIT1002_02812 and MIT1002_02813 are separated by 24 nucleotides MIT1002_02811: MIT1002_02811 - preprotein translocase subunit SecD, at 3,115,984 to 3,117,828 _02811 MIT1002_02812: MIT1002_02812 - preprotein translocase subunit YajC, at 3,117,884 to 3,118,219 _02812 MIT1002_02813: MIT1002_02813 - Queuine tRNA-ribosyltransferase, at 3,118,244 to 3,119,356 _02813 Position (kb) 3117 3118 3119Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 3117.037 kb on + strand, within MIT1002_02811at 3117.047 kb on + strand, within MIT1002_02811at 3117.055 kb on - strand, within MIT1002_02811at 3117.055 kb on - strand, within MIT1002_02811at 3117.204 kb on + strand, within MIT1002_02811at 3117.204 kb on + strand, within MIT1002_02811at 3117.204 kb on + strand, within MIT1002_02811at 3117.204 kb on + strand, within MIT1002_02811at 3117.222 kb on + strand, within MIT1002_02811at 3117.222 kb on + strand, within MIT1002_02811at 3117.230 kb on - strand, within MIT1002_02811at 3117.230 kb on - strand, within MIT1002_02811at 3117.266 kb on + strand, within MIT1002_02811at 3117.266 kb on + strand, within MIT1002_02811at 3117.274 kb on - strand, within MIT1002_02811at 3117.274 kb on - strand, within MIT1002_02811at 3117.274 kb on - strand, within MIT1002_02811at 3117.321 kb on + strand, within MIT1002_02811at 3117.418 kb on - strand, within MIT1002_02811at 3117.435 kb on + strand, within MIT1002_02811at 3117.441 kb on - strand, within MIT1002_02811at 3117.458 kb on - strand, within MIT1002_02811at 3117.458 kb on - strand, within MIT1002_02811at 3117.458 kb on - strand, within MIT1002_02811at 3117.458 kb on - strand, within MIT1002_02811at 3117.458 kb on - strand, within MIT1002_02811at 3117.458 kb on - strand, within MIT1002_02811at 3117.458 kb on - strand, within MIT1002_02811at 3117.486 kb on - strand, within MIT1002_02811at 3117.699 kb on - strandat 3117.801 kb on - strandat 3117.801 kb on - strandat 3117.825 kb on + strandat 3117.828 kb on - strandat 3117.830 kb on + strandat 3117.849 kb on + strandat 3117.851 kb on + strandat 3117.913 kb on + strandat 3117.913 kb on + strandat 3117.913 kb on + strandat 3117.913 kb on + strandat 3118.086 kb on + strand, within MIT1002_02812at 3118.086 kb on + strand, within MIT1002_02812at 3118.086 kb on + strand, within MIT1002_02812at 3118.094 kb on - strand, within MIT1002_02812at 3118.094 kb on - strand, within MIT1002_02812at 3118.179 kb on + strand, within MIT1002_02812at 3118.179 kb on + strand, within MIT1002_02812at 3118.189 kb on + strandat 3118.333 kb on - strandat 3118.334 kb on + strandat 3118.340 kb on - strandat 3118.379 kb on - strand, within MIT1002_02813at 3118.379 kb on - strand, within MIT1002_02813at 3118.379 kb on - strand, within MIT1002_02813at 3118.403 kb on - strand, within MIT1002_02813at 3118.505 kb on + strand, within MIT1002_02813at 3118.518 kb on - strand, within MIT1002_02813at 3118.532 kb on - strand, within MIT1002_02813at 3118.540 kb on - strand, within MIT1002_02813at 3118.561 kb on + strand, within MIT1002_02813at 3118.561 kb on + strand, within MIT1002_02813at 3118.569 kb on + strand, within MIT1002_02813at 3118.569 kb on - strand, within MIT1002_02813at 3118.569 kb on - strand, within MIT1002_02813at 3118.569 kb on - strand, within MIT1002_02813at 3118.569 kb on - strand, within MIT1002_02813at 3118.569 kb on - strand, within MIT1002_02813at 3118.569 kb on - strand, within MIT1002_02813at 3118.571 kb on + strand, within MIT1002_02813at 3118.589 kb on + strand, within MIT1002_02813at 3118.602 kb on - strand, within MIT1002_02813at 3118.618 kb on - strand, within MIT1002_02813at 3118.778 kb on + strand, within MIT1002_02813at 3118.786 kb on - strand, within MIT1002_02813at 3118.793 kb on - strand, within MIT1002_02813at 3118.793 kb on - strand, within MIT1002_02813at 3118.836 kb on - strand, within MIT1002_02813at 3118.916 kb on - strand, within MIT1002_02813at 3118.917 kb on + strand, within MIT1002_02813at 3118.917 kb on + strand, within MIT1002_02813at 3118.925 kb on - strand, within MIT1002_02813at 3118.926 kb on - strand, within MIT1002_02813at 3119.009 kb on + strand, within MIT1002_02813at 3119.098 kb on + strand, within MIT1002_02813at 3119.106 kb on - strand, within MIT1002_02813at 3119.131 kb on - strand, within MIT1002_02813at 3119.206 kb on - strand, within MIT1002_02813at 3119.206 kb on - strand, within MIT1002_02813at 3119.211 kb on - strand, within MIT1002_02813at 3119.211 kb on - strand, within MIT1002_02813

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6
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3,117,037 + MIT1002_02811 0.57 -1.3
3,117,047 + MIT1002_02811 0.58 -0.6
3,117,055 - MIT1002_02811 0.58 -1.8
3,117,055 - MIT1002_02811 0.58 -2.3
3,117,204 + MIT1002_02811 0.66 -1.7
3,117,204 + MIT1002_02811 0.66 -2.6
3,117,204 + MIT1002_02811 0.66 -0.1
3,117,204 + MIT1002_02811 0.66 -3.9
3,117,222 + MIT1002_02811 0.67 +0.6
3,117,222 + MIT1002_02811 0.67 -2.6
3,117,230 - MIT1002_02811 0.68 -1.3
3,117,230 - MIT1002_02811 0.68 -2.7
3,117,266 + MIT1002_02811 0.69 -3.7
3,117,266 + MIT1002_02811 0.69 -6.3
3,117,274 - MIT1002_02811 0.70 -1.0
3,117,274 - MIT1002_02811 0.70 -2.4
3,117,274 - MIT1002_02811 0.70 -2.0
3,117,321 + MIT1002_02811 0.72 +0.3
3,117,418 - MIT1002_02811 0.78 -3.4
3,117,435 + MIT1002_02811 0.79 -1.7
3,117,441 - MIT1002_02811 0.79 -0.9
3,117,458 - MIT1002_02811 0.80 -6.0
3,117,458 - MIT1002_02811 0.80 -2.6
3,117,458 - MIT1002_02811 0.80 -2.4
3,117,458 - MIT1002_02811 0.80 -2.3
3,117,458 - MIT1002_02811 0.80 -2.7
3,117,458 - MIT1002_02811 0.80 +0.9
3,117,458 - MIT1002_02811 0.80 +0.1
3,117,486 - MIT1002_02811 0.81 -2.2
3,117,699 - -2.0
3,117,801 - -2.4
3,117,801 - +0.9
3,117,825 + -1.4
3,117,828 - -1.3
3,117,830 + -3.8
3,117,849 + -2.3
3,117,851 + -2.6
3,117,913 + -3.5
3,117,913 + -1.2
3,117,913 + -2.0
3,117,913 + -1.3
3,118,086 + MIT1002_02812 0.60 -3.5
3,118,086 + MIT1002_02812 0.60 -0.3
3,118,086 + MIT1002_02812 0.60 -0.7
3,118,094 - MIT1002_02812 0.62 -0.1
3,118,094 - MIT1002_02812 0.62 -0.3
3,118,179 + MIT1002_02812 0.88 -2.2
3,118,179 + MIT1002_02812 0.88 -0.7
3,118,189 + -2.0
3,118,333 - -2.6
3,118,334 + -1.5
3,118,340 - -0.7
3,118,379 - MIT1002_02813 0.12 +1.5
3,118,379 - MIT1002_02813 0.12 +1.2
3,118,379 - MIT1002_02813 0.12 -0.8
3,118,403 - MIT1002_02813 0.14 +0.2
3,118,505 + MIT1002_02813 0.23 -1.3
3,118,518 - MIT1002_02813 0.25 +0.3
3,118,532 - MIT1002_02813 0.26 -0.3
3,118,540 - MIT1002_02813 0.27 -0.1
3,118,561 + MIT1002_02813 0.28 -2.0
3,118,561 + MIT1002_02813 0.28 -1.5
3,118,569 + MIT1002_02813 0.29 -0.7
3,118,569 - MIT1002_02813 0.29 +2.6
3,118,569 - MIT1002_02813 0.29 +0.3
3,118,569 - MIT1002_02813 0.29 -1.0
3,118,569 - MIT1002_02813 0.29 -1.5
3,118,569 - MIT1002_02813 0.29 -0.6
3,118,569 - MIT1002_02813 0.29 -1.3
3,118,571 + MIT1002_02813 0.29 -1.2
3,118,589 + MIT1002_02813 0.31 -1.7
3,118,602 - MIT1002_02813 0.32 -0.6
3,118,618 - MIT1002_02813 0.34 +0.6
3,118,778 + MIT1002_02813 0.48 -1.3
3,118,786 - MIT1002_02813 0.49 +1.3
3,118,793 - MIT1002_02813 0.49 -0.6
3,118,793 - MIT1002_02813 0.49 -0.3
3,118,836 - MIT1002_02813 0.53 -0.7
3,118,916 - MIT1002_02813 0.60 +1.7
3,118,917 + MIT1002_02813 0.60 +0.9
3,118,917 + MIT1002_02813 0.60 -2.8
3,118,925 - MIT1002_02813 0.61 +0.3
3,118,926 - MIT1002_02813 0.61 +1.0
3,119,009 + MIT1002_02813 0.69 -2.7
3,119,098 + MIT1002_02813 0.77 -1.6
3,119,106 - MIT1002_02813 0.77 +1.3
3,119,131 - MIT1002_02813 0.80 -2.9
3,119,206 - MIT1002_02813 0.86 +1.3
3,119,206 - MIT1002_02813 0.86 -0.3
3,119,211 - MIT1002_02813 0.87 -1.7
3,119,211 - MIT1002_02813 0.87 -2.9

Or see this region's nucleotide sequence