Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02760
Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6 |
---|---|---|---|---|---|
remove | |||||
3,065,763 | - | MIT1002_02759 | 0.28 | -2.4 | |
3,066,302 | + | MIT1002_02759 | 0.70 | -0.3 | |
3,066,353 | + | MIT1002_02759 | 0.74 | +0.3 | |
3,066,389 | - | MIT1002_02759 | 0.77 | -2.2 | |
3,066,487 | + | MIT1002_02759 | 0.85 | -0.9 | |
3,066,552 | + | MIT1002_02759 | 0.90 | -0.6 | |
3,066,753 | + | +2.2 | |||
3,066,809 | + | -2.7 | |||
3,066,834 | - | MIT1002_02760 | 0.12 | -0.7 | |
3,066,842 | - | MIT1002_02760 | 0.13 | -0.7 | |
3,066,886 | - | MIT1002_02760 | 0.20 | +0.1 | |
3,066,886 | - | MIT1002_02760 | 0.20 | -1.8 | |
3,066,886 | - | MIT1002_02760 | 0.20 | -2.2 | |
3,066,896 | - | MIT1002_02760 | 0.22 | -1.2 | |
3,067,041 | + | MIT1002_02760 | 0.45 | -2.8 | |
3,067,086 | - | MIT1002_02760 | 0.52 | -1.9 | |
3,067,100 | - | MIT1002_02760 | 0.54 | +0.9 | |
3,067,320 | + | MIT1002_02760 | 0.89 | -1.4 | |
3,067,440 | - | -0.9 | |||
3,067,440 | - | +1.3 | |||
3,067,448 | - | -1.1 | |||
3,067,506 | - | -2.2 | |||
3,068,067 | - | MIT1002_02761 | 0.45 | +0.9 | |
3,068,102 | + | MIT1002_02761 | 0.47 | -0.9 | |
3,068,371 | - | MIT1002_02761 | 0.68 | +1.6 |
Or see this region's nucleotide sequence