Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02760

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_02759 and MIT1002_02760 are separated by 74 nucleotidesMIT1002_02760 and MIT1002_02761 are separated by 98 nucleotides MIT1002_02759: MIT1002_02759 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 3,065,409 to 3,066,683 _02759 MIT1002_02760: MIT1002_02760 - ATP-dependent Clp protease proteolytic subunit precursor, at 3,066,758 to 3,067,387 _02760 MIT1002_02761: MIT1002_02761 - Trigger factor, at 3,067,486 to 3,068,790 _02761 Position (kb) 3066 3067 3068Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3065.763 kb on - strand, within MIT1002_02759at 3066.302 kb on + strand, within MIT1002_02759at 3066.353 kb on + strand, within MIT1002_02759at 3066.389 kb on - strand, within MIT1002_02759at 3066.487 kb on + strand, within MIT1002_02759at 3066.552 kb on + strand, within MIT1002_02759at 3066.753 kb on + strandat 3066.809 kb on + strandat 3066.834 kb on - strand, within MIT1002_02760at 3066.842 kb on - strand, within MIT1002_02760at 3066.886 kb on - strand, within MIT1002_02760at 3066.886 kb on - strand, within MIT1002_02760at 3066.886 kb on - strand, within MIT1002_02760at 3066.896 kb on - strand, within MIT1002_02760at 3067.041 kb on + strand, within MIT1002_02760at 3067.086 kb on - strand, within MIT1002_02760at 3067.100 kb on - strand, within MIT1002_02760at 3067.320 kb on + strand, within MIT1002_02760at 3067.440 kb on - strandat 3067.440 kb on - strandat 3067.448 kb on - strandat 3067.506 kb on - strandat 3068.067 kb on - strand, within MIT1002_02761at 3068.102 kb on + strand, within MIT1002_02761at 3068.371 kb on - strand, within MIT1002_02761

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6
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3,065,763 - MIT1002_02759 0.28 -2.4
3,066,302 + MIT1002_02759 0.70 -0.3
3,066,353 + MIT1002_02759 0.74 +0.3
3,066,389 - MIT1002_02759 0.77 -2.2
3,066,487 + MIT1002_02759 0.85 -0.9
3,066,552 + MIT1002_02759 0.90 -0.6
3,066,753 + +2.2
3,066,809 + -2.7
3,066,834 - MIT1002_02760 0.12 -0.7
3,066,842 - MIT1002_02760 0.13 -0.7
3,066,886 - MIT1002_02760 0.20 +0.1
3,066,886 - MIT1002_02760 0.20 -1.8
3,066,886 - MIT1002_02760 0.20 -2.2
3,066,896 - MIT1002_02760 0.22 -1.2
3,067,041 + MIT1002_02760 0.45 -2.8
3,067,086 - MIT1002_02760 0.52 -1.9
3,067,100 - MIT1002_02760 0.54 +0.9
3,067,320 + MIT1002_02760 0.89 -1.4
3,067,440 - -0.9
3,067,440 - +1.3
3,067,448 - -1.1
3,067,506 - -2.2
3,068,067 - MIT1002_02761 0.45 +0.9
3,068,102 + MIT1002_02761 0.47 -0.9
3,068,371 - MIT1002_02761 0.68 +1.6

Or see this region's nucleotide sequence