Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02757

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMIT1002_02755 and MIT1002_02756 are separated by 313 nucleotidesMIT1002_02756 and MIT1002_02757 are separated by 323 nucleotidesMIT1002_02757 and MIT1002_02758 are separated by 369 nucleotides MIT1002_02755: MIT1002_02755 - Peptidyl-prolyl cis-trans isomerase D, at 3,058,550 to 3,060,442 _02755 MIT1002_02756: MIT1002_02756 - hypothetical protein, at 3,060,756 to 3,061,028 _02756 MIT1002_02757: MIT1002_02757 - Lon protease, at 3,061,352 to 3,063,703 _02757 MIT1002_02758: MIT1002_02758 - Transposase IS116/IS110/IS902 family protein, at 3,064,073 to 3,065,098 _02758 Position (kb) 3061 3062 3063 3064Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 3060.358 kb on - strandat 3060.358 kb on - strandat 3060.412 kb on + strandat 3060.463 kb on + strandat 3060.530 kb on - strandat 3060.530 kb on - strandat 3060.564 kb on + strandat 3060.616 kb on - strandat 3060.640 kb on - strandat 3060.666 kb on - strandat 3060.729 kb on - strandat 3061.374 kb on - strandat 3061.376 kb on + strandat 3061.384 kb on - strandat 3061.600 kb on - strand, within MIT1002_02757at 3061.642 kb on + strand, within MIT1002_02757at 3061.649 kb on - strand, within MIT1002_02757at 3061.652 kb on + strand, within MIT1002_02757at 3061.786 kb on + strand, within MIT1002_02757at 3061.832 kb on + strand, within MIT1002_02757at 3061.869 kb on + strand, within MIT1002_02757at 3061.869 kb on - strand, within MIT1002_02757at 3061.877 kb on + strand, within MIT1002_02757at 3061.881 kb on + strand, within MIT1002_02757at 3061.885 kb on - strand, within MIT1002_02757at 3061.891 kb on + strand, within MIT1002_02757at 3061.973 kb on + strand, within MIT1002_02757at 3061.975 kb on + strand, within MIT1002_02757at 3061.988 kb on - strand, within MIT1002_02757at 3061.988 kb on - strand, within MIT1002_02757at 3061.988 kb on - strand, within MIT1002_02757at 3062.040 kb on + strand, within MIT1002_02757at 3062.073 kb on + strand, within MIT1002_02757at 3062.285 kb on + strand, within MIT1002_02757at 3062.292 kb on - strand, within MIT1002_02757at 3062.292 kb on - strand, within MIT1002_02757at 3062.377 kb on - strand, within MIT1002_02757at 3062.384 kb on - strand, within MIT1002_02757at 3062.531 kb on + strand, within MIT1002_02757at 3062.658 kb on - strand, within MIT1002_02757at 3062.737 kb on - strand, within MIT1002_02757at 3062.749 kb on + strand, within MIT1002_02757at 3062.997 kb on + strand, within MIT1002_02757at 3062.997 kb on + strand, within MIT1002_02757at 3062.997 kb on + strand, within MIT1002_02757at 3062.997 kb on + strand, within MIT1002_02757at 3063.005 kb on - strand, within MIT1002_02757at 3063.005 kb on - strand, within MIT1002_02757at 3063.005 kb on - strand, within MIT1002_02757at 3063.104 kb on + strand, within MIT1002_02757at 3063.129 kb on - strand, within MIT1002_02757at 3063.133 kb on + strand, within MIT1002_02757at 3063.133 kb on + strand, within MIT1002_02757at 3063.250 kb on - strand, within MIT1002_02757at 3063.282 kb on - strand, within MIT1002_02757at 3063.319 kb on + strand, within MIT1002_02757at 3063.495 kb on + strandat 3063.495 kb on + strandat 3063.495 kb on + strandat 3063.503 kb on - strandat 3063.503 kb on - strandat 3063.588 kb on - strandat 3063.622 kb on - strandat 3063.795 kb on + strandat 3063.817 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6
remove
3,060,358 - -0.1
3,060,358 - -2.2
3,060,412 + -1.6
3,060,463 + -0.6
3,060,530 - +0.9
3,060,530 - +0.9
3,060,564 + +1.8
3,060,616 - -0.7
3,060,640 - -1.3
3,060,666 - +0.6
3,060,729 - -2.1
3,061,374 - +0.7
3,061,376 + -1.4
3,061,384 - -2.0
3,061,600 - MIT1002_02757 0.11 -0.7
3,061,642 + MIT1002_02757 0.12 -4.9
3,061,649 - MIT1002_02757 0.13 -3.0
3,061,652 + MIT1002_02757 0.13 -2.2
3,061,786 + MIT1002_02757 0.18 -3.1
3,061,832 + MIT1002_02757 0.20 -2.0
3,061,869 + MIT1002_02757 0.22 -1.9
3,061,869 - MIT1002_02757 0.22 -4.6
3,061,877 + MIT1002_02757 0.22 +0.1
3,061,881 + MIT1002_02757 0.22 -2.5
3,061,885 - MIT1002_02757 0.23 -1.8
3,061,891 + MIT1002_02757 0.23 -3.6
3,061,973 + MIT1002_02757 0.26 -2.3
3,061,975 + MIT1002_02757 0.26 -0.6
3,061,988 - MIT1002_02757 0.27 -3.3
3,061,988 - MIT1002_02757 0.27 -2.9
3,061,988 - MIT1002_02757 0.27 -4.5
3,062,040 + MIT1002_02757 0.29 -2.2
3,062,073 + MIT1002_02757 0.31 +0.9
3,062,285 + MIT1002_02757 0.40 -0.1
3,062,292 - MIT1002_02757 0.40 -1.2
3,062,292 - MIT1002_02757 0.40 -0.6
3,062,377 - MIT1002_02757 0.44 -0.6
3,062,384 - MIT1002_02757 0.44 -0.7
3,062,531 + MIT1002_02757 0.50 -3.0
3,062,658 - MIT1002_02757 0.56 -2.5
3,062,737 - MIT1002_02757 0.59 -2.7
3,062,749 + MIT1002_02757 0.59 -3.7
3,062,997 + MIT1002_02757 0.70 +0.6
3,062,997 + MIT1002_02757 0.70 -2.3
3,062,997 + MIT1002_02757 0.70 -5.2
3,062,997 + MIT1002_02757 0.70 -1.6
3,063,005 - MIT1002_02757 0.70 -2.5
3,063,005 - MIT1002_02757 0.70 -3.8
3,063,005 - MIT1002_02757 0.70 -2.6
3,063,104 + MIT1002_02757 0.74 -2.9
3,063,129 - MIT1002_02757 0.76 -3.1
3,063,133 + MIT1002_02757 0.76 -2.1
3,063,133 + MIT1002_02757 0.76 -2.3
3,063,250 - MIT1002_02757 0.81 -2.0
3,063,282 - MIT1002_02757 0.82 -1.2
3,063,319 + MIT1002_02757 0.84 -1.0
3,063,495 + -1.9
3,063,495 + -3.6
3,063,495 + -1.9
3,063,503 - -0.4
3,063,503 - -3.1
3,063,588 - -1.6
3,063,622 - -1.3
3,063,795 + +1.5
3,063,817 - +0.2

Or see this region's nucleotide sequence