Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02718

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_02717 and MIT1002_02718 are separated by 124 nucleotidesMIT1002_02718 and MIT1002_02719 are separated by 99 nucleotidesMIT1002_02719 and MIT1002_02720 are separated by 197 nucleotides MIT1002_02717: MIT1002_02717 - Sigma-E factor regulatory protein RseB precursor, at 3,020,159 to 3,021,343 _02717 MIT1002_02718: MIT1002_02718 - Sigma-E factor negative regulatory protein, at 3,021,468 to 3,022,049 _02718 MIT1002_02719: MIT1002_02719 - Sigma-24, at 3,022,149 to 3,022,727 _02719 MIT1002_02720: MIT1002_02720 - L-aspartate oxidase, at 3,022,925 to 3,024,610 _02720 Position (kb) 3021 3022 3023Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3020.491 kb on - strand, within MIT1002_02717at 3020.491 kb on - strand, within MIT1002_02717at 3020.509 kb on + strand, within MIT1002_02717at 3020.533 kb on + strand, within MIT1002_02717at 3020.555 kb on + strand, within MIT1002_02717at 3020.599 kb on + strand, within MIT1002_02717at 3020.607 kb on - strand, within MIT1002_02717at 3020.749 kb on - strand, within MIT1002_02717at 3020.749 kb on - strand, within MIT1002_02717at 3020.761 kb on + strand, within MIT1002_02717at 3020.769 kb on - strand, within MIT1002_02717at 3020.771 kb on + strand, within MIT1002_02717at 3020.796 kb on - strand, within MIT1002_02717at 3020.814 kb on - strand, within MIT1002_02717at 3020.826 kb on - strand, within MIT1002_02717at 3020.828 kb on - strand, within MIT1002_02717at 3020.860 kb on - strand, within MIT1002_02717at 3020.919 kb on + strand, within MIT1002_02717at 3020.929 kb on + strand, within MIT1002_02717at 3020.959 kb on - strand, within MIT1002_02717at 3021.010 kb on + strand, within MIT1002_02717at 3021.066 kb on - strand, within MIT1002_02717at 3021.287 kb on + strandat 3021.325 kb on + strandat 3021.325 kb on + strandat 3021.365 kb on + strandat 3021.383 kb on - strandat 3021.518 kb on - strandat 3021.547 kb on - strand, within MIT1002_02718at 3021.681 kb on - strand, within MIT1002_02718at 3021.681 kb on - strand, within MIT1002_02718at 3021.681 kb on - strand, within MIT1002_02718at 3021.842 kb on - strand, within MIT1002_02718at 3022.092 kb on - strandat 3022.102 kb on - strandat 3022.322 kb on - strand, within MIT1002_02719at 3022.380 kb on - strand, within MIT1002_02719at 3022.770 kb on - strandat 3022.786 kb on - strandat 3022.848 kb on - strandat 3022.848 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6
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3,020,491 - MIT1002_02717 0.28 -1.1
3,020,491 - MIT1002_02717 0.28 -1.0
3,020,509 + MIT1002_02717 0.30 -1.7
3,020,533 + MIT1002_02717 0.32 -0.6
3,020,555 + MIT1002_02717 0.33 -0.6
3,020,599 + MIT1002_02717 0.37 -2.5
3,020,607 - MIT1002_02717 0.38 -0.9
3,020,749 - MIT1002_02717 0.50 -0.1
3,020,749 - MIT1002_02717 0.50 -1.6
3,020,761 + MIT1002_02717 0.51 -2.4
3,020,769 - MIT1002_02717 0.51 -2.2
3,020,771 + MIT1002_02717 0.52 -1.5
3,020,796 - MIT1002_02717 0.54 -2.4
3,020,814 - MIT1002_02717 0.55 -1.1
3,020,826 - MIT1002_02717 0.56 +0.1
3,020,828 - MIT1002_02717 0.56 -2.5
3,020,860 - MIT1002_02717 0.59 -0.4
3,020,919 + MIT1002_02717 0.64 -1.2
3,020,929 + MIT1002_02717 0.65 -3.3
3,020,959 - MIT1002_02717 0.68 -2.6
3,021,010 + MIT1002_02717 0.72 -3.3
3,021,066 - MIT1002_02717 0.77 -2.4
3,021,287 + -1.6
3,021,325 + -3.3
3,021,325 + -1.2
3,021,365 + -1.5
3,021,383 - -3.3
3,021,518 - -1.0
3,021,547 - MIT1002_02718 0.14 -0.7
3,021,681 - MIT1002_02718 0.37 -4.1
3,021,681 - MIT1002_02718 0.37 -0.1
3,021,681 - MIT1002_02718 0.37 -1.7
3,021,842 - MIT1002_02718 0.64 -1.7
3,022,092 - -2.3
3,022,102 - -2.1
3,022,322 - MIT1002_02719 0.30 -0.6
3,022,380 - MIT1002_02719 0.40 -0.1
3,022,770 - -1.0
3,022,786 - -1.5
3,022,848 - +0.3
3,022,848 - -1.9

Or see this region's nucleotide sequence