Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_02402 and MIT1002_02403 are separated by 122 nucleotides MIT1002_02403 and MIT1002_02404 are separated by 3 nucleotides MIT1002_02404 and MIT1002_02405 overlap by 1 nucleotides
MIT1002_02402: MIT1002_02402 - Putative glucose-6-phosphate 1-epimerase, at 2,683,309 to 2,684,160
_02402
MIT1002_02403: MIT1002_02403 - KHG/KDPG aldolase, at 2,684,283 to 2,684,927
_02403
MIT1002_02404: MIT1002_02404 - Glucokinase, at 2,684,931 to 2,685,884
_02404
MIT1002_02405: MIT1002_02405 - Phosphogluconate dehydratase, at 2,685,884 to 2,687,710
_02405
Position (kb)
2684
2685
2686 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2683.978 kb on + strand, within MIT1002_02402 at 2684.120 kb on - strand at 2684.128 kb on - strand at 2684.128 kb on - strand at 2684.208 kb on + strand at 2684.968 kb on - strand at 2685.003 kb on + strand at 2685.290 kb on - strand, within MIT1002_02404 at 2685.290 kb on - strand, within MIT1002_02404 at 2685.345 kb on + strand, within MIT1002_02404 at 2685.345 kb on + strand, within MIT1002_02404 at 2685.345 kb on + strand, within MIT1002_02404 at 2685.353 kb on - strand, within MIT1002_02404 at 2685.353 kb on - strand, within MIT1002_02404 at 2685.353 kb on - strand, within MIT1002_02404 at 2685.429 kb on - strand, within MIT1002_02404 at 2685.445 kb on + strand, within MIT1002_02404 at 2685.453 kb on - strand, within MIT1002_02404 at 2685.464 kb on + strand, within MIT1002_02404 at 2685.525 kb on + strand, within MIT1002_02404 at 2685.533 kb on - strand, within MIT1002_02404 at 2685.624 kb on - strand, within MIT1002_02404 at 2685.697 kb on - strand, within MIT1002_02404 at 2685.717 kb on - strand, within MIT1002_02404 at 2685.767 kb on + strand, within MIT1002_02404 at 2685.855 kb on + strand at 2685.863 kb on - strand at 2685.890 kb on - strand at 2685.896 kb on - strand at 2685.908 kb on - strand at 2685.908 kb on - strand at 2685.933 kb on - strand at 2685.933 kb on - strand at 2685.933 kb on - strand at 2685.935 kb on + strand at 2685.943 kb on - strand at 2685.943 kb on - strand at 2686.048 kb on + strand at 2686.054 kb on + strand at 2686.209 kb on - strand, within MIT1002_02405 at 2686.403 kb on - strand, within MIT1002_02405 at 2686.410 kb on - strand, within MIT1002_02405 at 2686.610 kb on + strand, within MIT1002_02405 at 2686.733 kb on - strand, within MIT1002_02405 at 2686.733 kb on - strand, within MIT1002_02405 at 2686.733 kb on - strand, within MIT1002_02405 at 2686.733 kb on - strand, within MIT1002_02405 at 2686.771 kb on - strand, within MIT1002_02405 at 2686.834 kb on + strand, within MIT1002_02405 at 2686.842 kb on - strand, within MIT1002_02405
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6 remove 2,683,978 + MIT1002_02402 0.79 +0.1 2,684,120 - -0.3 2,684,128 - +1.5 2,684,128 - +0.5 2,684,208 + -2.8 2,684,968 - -3.6 2,685,003 + +0.4 2,685,290 - MIT1002_02404 0.38 -0.7 2,685,290 - MIT1002_02404 0.38 -2.4 2,685,345 + MIT1002_02404 0.43 -1.1 2,685,345 + MIT1002_02404 0.43 +0.4 2,685,345 + MIT1002_02404 0.43 -2.0 2,685,353 - MIT1002_02404 0.44 -1.4 2,685,353 - MIT1002_02404 0.44 -1.7 2,685,353 - MIT1002_02404 0.44 -4.4 2,685,429 - MIT1002_02404 0.52 -0.1 2,685,445 + MIT1002_02404 0.54 -1.5 2,685,453 - MIT1002_02404 0.55 -1.0 2,685,464 + MIT1002_02404 0.56 -1.4 2,685,525 + MIT1002_02404 0.62 -2.1 2,685,533 - MIT1002_02404 0.63 -3.3 2,685,624 - MIT1002_02404 0.73 -4.4 2,685,697 - MIT1002_02404 0.80 -4.7 2,685,717 - MIT1002_02404 0.82 -3.9 2,685,767 + MIT1002_02404 0.88 -1.2 2,685,855 + -2.1 2,685,863 - -3.5 2,685,890 - -1.2 2,685,896 - -0.9 2,685,908 - +0.9 2,685,908 - -0.3 2,685,933 - +0.8 2,685,933 - -0.4 2,685,933 - +0.1 2,685,935 + +0.1 2,685,943 - -1.4 2,685,943 - +0.4 2,686,048 + +0.4 2,686,054 + +0.1 2,686,209 - MIT1002_02405 0.18 -1.0 2,686,403 - MIT1002_02405 0.28 -1.4 2,686,410 - MIT1002_02405 0.29 +0.1 2,686,610 + MIT1002_02405 0.40 -1.0 2,686,733 - MIT1002_02405 0.46 -0.3 2,686,733 - MIT1002_02405 0.46 -1.7 2,686,733 - MIT1002_02405 0.46 -2.3 2,686,733 - MIT1002_02405 0.46 -0.1 2,686,771 - MIT1002_02405 0.49 -0.7 2,686,834 + MIT1002_02405 0.52 -0.1 2,686,842 - MIT1002_02405 0.52 -0.1
Or see this region's nucleotide sequence