Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02394

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6
2,669,140	-		MIT1002_02393	0.29	-0.4
2,669,165	+		MIT1002_02393	0.31	-0.4
2,669,215	+		MIT1002_02393	0.35	-1.8
2,669,258	+		MIT1002_02393	0.39	+0.3
2,669,282	-		MIT1002_02393	0.41	+2.7
2,669,293	+		MIT1002_02393	0.42	-0.2
2,669,294	-		MIT1002_02393	0.42	-2.0
2,669,309	-		MIT1002_02393	0.44	+0.5
2,669,345	-		MIT1002_02393	0.47	-0.1
2,669,349	+		MIT1002_02393	0.47	-0.2
2,669,410	-		MIT1002_02393	0.52	-1.7
2,669,430	+		MIT1002_02393	0.54	-0.5
2,669,438	-		MIT1002_02393	0.55	-1.0
2,669,445	-		MIT1002_02393	0.56	+0.7
2,669,445	-		MIT1002_02393	0.56	+0.1
2,669,454	+		MIT1002_02393	0.56	-2.1
2,669,567	+		MIT1002_02393	0.66	-1.0
2,669,575	-		MIT1002_02393	0.67	-2.2
2,669,577	-		MIT1002_02393	0.67	-0.5
2,669,641	+		MIT1002_02393	0.73	-0.3
2,669,641	+		MIT1002_02393	0.73	+1.1
2,669,641	+		MIT1002_02393	0.73	-0.1
2,669,651	+		MIT1002_02393	0.74	-1.0
2,669,651	+		MIT1002_02393	0.74	-0.1
2,669,651	+		MIT1002_02393	0.74	-1.3
2,669,651	+		MIT1002_02393	0.74	-3.1
2,669,651	+		MIT1002_02393	0.74	-0.6
2,669,651	+		MIT1002_02393	0.74	+1.5
2,669,651	+		MIT1002_02393	0.74	-1.6
2,669,651	+		MIT1002_02393	0.74	+0.2
2,669,651	+		MIT1002_02393	0.74	+0.4
2,669,651	+		MIT1002_02393	0.74	-2.3
2,669,651	+		MIT1002_02393	0.74	-1.0
2,669,659	-		MIT1002_02393	0.74	-0.3
2,669,659	-		MIT1002_02393	0.74	-0.7
2,669,659	-		MIT1002_02393	0.74	+0.1
2,669,659	-		MIT1002_02393	0.74	-0.2
2,669,659	-		MIT1002_02393	0.74	+0.8
2,669,659	-		MIT1002_02393	0.74	+2.2
2,669,659	-		MIT1002_02393	0.74	+0.0
2,669,659	-		MIT1002_02393	0.74	+3.1
2,669,659	-		MIT1002_02393	0.74	+1.8
2,669,659	-		MIT1002_02393	0.74	-1.7
2,669,677	-		MIT1002_02393	0.76	+1.0
2,669,721	+		MIT1002_02393	0.80	-0.9
2,669,748	+		MIT1002_02393	0.82	+1.4
2,669,887	-				-0.9
2,669,907	+				-1.0
2,669,919	-				-1.1
2,669,919	-				-1.0
2,670,025	+				-0.4
2,670,156	+				+0.7
2,670,164	-				-1.9
2,670,269	-		MIT1002_02394	0.10	-1.1
2,670,397	+		MIT1002_02394	0.19	-0.1
2,670,397	-		MIT1002_02394	0.19	-2.8
2,670,435	+		MIT1002_02394	0.22	-1.2
2,670,532	+		MIT1002_02394	0.28	-0.1
2,670,539	+		MIT1002_02394	0.29	-2.7
2,670,547	-		MIT1002_02394	0.30	-1.4
2,670,547	-		MIT1002_02394	0.30	-1.3
2,670,565	+		MIT1002_02394	0.31	-2.2
2,670,601	+		MIT1002_02394	0.33	-0.7
2,670,609	-		MIT1002_02394	0.34	-3.0
2,670,624	-		MIT1002_02394	0.35	-2.9
2,670,624	-		MIT1002_02394	0.35	-3.2
2,670,624	-		MIT1002_02394	0.35	-1.7
2,670,668	-		MIT1002_02394	0.38	-4.0
2,670,769	+		MIT1002_02394	0.45	-1.3
2,670,775	-		MIT1002_02394	0.45	-2.6
2,670,812	-		MIT1002_02394	0.48	-1.5
2,670,813	-		MIT1002_02394	0.48	-3.2
2,670,824	+		MIT1002_02394	0.49	-0.6
2,670,832	-		MIT1002_02394	0.49	-0.6
2,670,895	+		MIT1002_02394	0.54	-0.4
2,670,960	+		MIT1002_02394	0.58	-2.4
2,671,010	-		MIT1002_02394	0.62	-2.2
2,671,115	+		MIT1002_02394	0.69	-0.4
2,671,147	-		MIT1002_02394	0.71	-2.8
2,671,153	+		MIT1002_02394	0.71	-0.7
2,671,170	+		MIT1002_02394	0.73	-2.2
2,671,178	-		MIT1002_02394	0.73	-3.9
2,671,230	+		MIT1002_02394	0.77	-3.0
2,671,245	+		MIT1002_02394	0.78	-3.3
2,671,313	+		MIT1002_02394	0.83	-2.7
2,671,320	-		MIT1002_02394	0.83	-2.1
2,671,331	-		MIT1002_02394	0.84	-2.8
2,671,331	-		MIT1002_02394	0.84	-3.7
2,671,362	-		MIT1002_02394	0.86	-1.0
2,671,372	-		MIT1002_02394	0.87	-2.9
2,671,470	-				-2.0
2,671,514	+				-4.0
2,671,531	-				-1.7
2,671,580	-				-0.9
2,671,596	+				-2.0
2,671,604	-				-1.8
2,671,623	+				-1.9
2,671,702	+				-2.4
2,671,845	+				+0.1
2,671,866	+		MIT1002_02395	0.12	+0.5
2,672,035	+		MIT1002_02395	0.31	-0.7
2,672,061	+		MIT1002_02395	0.34	-1.0
2,672,071	+		MIT1002_02395	0.35	-1.1
2,672,079	-		MIT1002_02395	0.36	+0.5
2,672,090	-		MIT1002_02395	0.38	+1.1
2,672,151	-		MIT1002_02395	0.44	+0.8
2,672,179	+		MIT1002_02395	0.48	-0.7
2,672,191	+		MIT1002_02395	0.49	+1.1
2,672,199	-		MIT1002_02395	0.50	+1.2
2,672,199	-		MIT1002_02395	0.50	-2.7
2,672,211	+		MIT1002_02395	0.51	+1.5
2,672,226	+		MIT1002_02395	0.53	+0.5
2,672,226	+		MIT1002_02395	0.53	+0.2
2,672,234	-		MIT1002_02395	0.54	-1.3
2,672,254	+		MIT1002_02395	0.56	+0.0
2,672,334	+		MIT1002_02395	0.65	-0.8
2,672,334	+		MIT1002_02395	0.65	-0.1
2,672,363	-		MIT1002_02395	0.68	+0.5
2,672,387	-		MIT1002_02395	0.71	-0.5
2,672,395	+		MIT1002_02395	0.72	+0.3
2,672,532	-		MIT1002_02395	0.87	-1.0
2,672,537	-		MIT1002_02395	0.88	-1.1