Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_02389 and MIT1002_02390 overlap by 11 nucleotides MIT1002_02390 and MIT1002_02391 are separated by 0 nucleotides MIT1002_02391 and MIT1002_02392 are separated by 265 nucleotides
MIT1002_02389: MIT1002_02389 - hypothetical protein, at 2,663,226 to 2,666,168
_02389
MIT1002_02390: MIT1002_02390 - hypothetical protein, at 2,666,158 to 2,666,451
_02390
MIT1002_02391: MIT1002_02391 - putative membrane protein, at 2,666,452 to 2,666,778
_02391
MIT1002_02392: MIT1002_02392 - Amino-acid carrier protein AlsT, at 2,667,044 to 2,668,702
_02392
Position (kb)
2666
2667 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2665.455 kb on + strand, within MIT1002_02389 at 2665.529 kb on + strand, within MIT1002_02389 at 2665.529 kb on + strand, within MIT1002_02389 at 2665.529 kb on + strand, within MIT1002_02389 at 2665.529 kb on + strand, within MIT1002_02389 at 2665.537 kb on - strand, within MIT1002_02389 at 2665.537 kb on - strand, within MIT1002_02389 at 2665.537 kb on - strand, within MIT1002_02389 at 2665.537 kb on - strand, within MIT1002_02389 at 2665.537 kb on - strand, within MIT1002_02389 at 2665.537 kb on - strand, within MIT1002_02389 at 2665.537 kb on - strand, within MIT1002_02389 at 2665.537 kb on - strand, within MIT1002_02389 at 2665.585 kb on + strand, within MIT1002_02389 at 2665.631 kb on - strand, within MIT1002_02389 at 2665.661 kb on + strand, within MIT1002_02389 at 2665.662 kb on + strand, within MIT1002_02389 at 2665.740 kb on - strand, within MIT1002_02389 at 2665.835 kb on + strand, within MIT1002_02389 at 2665.879 kb on - strand at 2665.894 kb on - strand at 2665.909 kb on - strand at 2665.985 kb on + strand at 2665.993 kb on - strand at 2666.022 kb on - strand at 2666.077 kb on + strand at 2666.186 kb on + strand at 2666.194 kb on - strand, within MIT1002_02390 at 2666.242 kb on - strand, within MIT1002_02390 at 2666.245 kb on + strand, within MIT1002_02390 at 2666.281 kb on - strand, within MIT1002_02390 at 2666.330 kb on + strand, within MIT1002_02390 at 2666.358 kb on - strand, within MIT1002_02390 at 2666.406 kb on + strand, within MIT1002_02390 at 2666.428 kb on + strand at 2666.436 kb on - strand at 2666.436 kb on - strand at 2666.487 kb on + strand, within MIT1002_02391 at 2666.774 kb on - strand at 2666.779 kb on + strand at 2666.908 kb on - strand at 2666.936 kb on + strand at 2666.999 kb on - strand at 2667.009 kb on + strand at 2667.019 kb on + strand at 2667.019 kb on + strand at 2667.068 kb on + strand at 2667.111 kb on - strand at 2667.164 kb on + strand at 2667.192 kb on - strand at 2667.248 kb on - strand, within MIT1002_02392 at 2667.261 kb on - strand, within MIT1002_02392 at 2667.310 kb on + strand, within MIT1002_02392 at 2667.310 kb on + strand, within MIT1002_02392 at 2667.310 kb on + strand, within MIT1002_02392 at 2667.310 kb on + strand, within MIT1002_02392 at 2667.318 kb on - strand, within MIT1002_02392 at 2667.318 kb on - strand, within MIT1002_02392 at 2667.362 kb on + strand, within MIT1002_02392 at 2667.382 kb on + strand, within MIT1002_02392 at 2667.403 kb on + strand, within MIT1002_02392 at 2667.443 kb on - strand, within MIT1002_02392 at 2667.472 kb on + strand, within MIT1002_02392 at 2667.480 kb on - strand, within MIT1002_02392 at 2667.515 kb on - strand, within MIT1002_02392 at 2667.519 kb on + strand, within MIT1002_02392 at 2667.519 kb on + strand, within MIT1002_02392 at 2667.527 kb on - strand, within MIT1002_02392 at 2667.529 kb on + strand, within MIT1002_02392 at 2667.542 kb on + strand, within MIT1002_02392 at 2667.542 kb on + strand, within MIT1002_02392 at 2667.550 kb on - strand, within MIT1002_02392 at 2667.557 kb on - strand, within MIT1002_02392 at 2667.579 kb on + strand, within MIT1002_02392 at 2667.579 kb on + strand, within MIT1002_02392 at 2667.587 kb on - strand, within MIT1002_02392 at 2667.594 kb on - strand, within MIT1002_02392 at 2667.594 kb on - strand, within MIT1002_02392 at 2667.594 kb on - strand, within MIT1002_02392 at 2667.594 kb on - strand, within MIT1002_02392 at 2667.629 kb on - strand, within MIT1002_02392 at 2667.659 kb on + strand, within MIT1002_02392 at 2667.677 kb on + strand, within MIT1002_02392 at 2667.677 kb on + strand, within MIT1002_02392 at 2667.683 kb on - strand, within MIT1002_02392 at 2667.685 kb on - strand, within MIT1002_02392 at 2667.756 kb on + strand, within MIT1002_02392 at 2667.761 kb on + strand, within MIT1002_02392 at 2667.761 kb on + strand, within MIT1002_02392 at 2667.761 kb on + strand, within MIT1002_02392 at 2667.761 kb on + strand, within MIT1002_02392 at 2667.761 kb on + strand, within MIT1002_02392 at 2667.761 kb on + strand, within MIT1002_02392 at 2667.764 kb on - strand, within MIT1002_02392 at 2667.769 kb on - strand, within MIT1002_02392 at 2667.769 kb on - strand, within MIT1002_02392 at 2667.769 kb on - strand, within MIT1002_02392 at 2667.769 kb on - strand, within MIT1002_02392 at 2667.769 kb on - strand, within MIT1002_02392 at 2667.769 kb on - strand, within MIT1002_02392
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6 remove 2,665,455 + MIT1002_02389 0.76 -0.3 2,665,529 + MIT1002_02389 0.78 +0.7 2,665,529 + MIT1002_02389 0.78 +2.1 2,665,529 + MIT1002_02389 0.78 -0.1 2,665,529 + MIT1002_02389 0.78 -0.7 2,665,537 - MIT1002_02389 0.79 -1.0 2,665,537 - MIT1002_02389 0.79 -1.0 2,665,537 - MIT1002_02389 0.79 +0.5 2,665,537 - MIT1002_02389 0.79 -0.6 2,665,537 - MIT1002_02389 0.79 -1.4 2,665,537 - MIT1002_02389 0.79 -0.6 2,665,537 - MIT1002_02389 0.79 +1.4 2,665,537 - MIT1002_02389 0.79 -0.2 2,665,585 + MIT1002_02389 0.80 -1.1 2,665,631 - MIT1002_02389 0.82 +0.8 2,665,661 + MIT1002_02389 0.83 -1.4 2,665,662 + MIT1002_02389 0.83 -0.5 2,665,740 - MIT1002_02389 0.85 -0.2 2,665,835 + MIT1002_02389 0.89 -0.2 2,665,879 - -1.4 2,665,894 - +0.5 2,665,909 - -0.5 2,665,985 + -0.1 2,665,993 - -0.6 2,666,022 - -1.2 2,666,077 + +1.0 2,666,186 + -0.1 2,666,194 - MIT1002_02390 0.12 +0.7 2,666,242 - MIT1002_02390 0.29 -2.8 2,666,245 + MIT1002_02390 0.30 +0.1 2,666,281 - MIT1002_02390 0.42 -3.4 2,666,330 + MIT1002_02390 0.59 -0.4 2,666,358 - MIT1002_02390 0.68 -1.8 2,666,406 + MIT1002_02390 0.84 -3.2 2,666,428 + -2.1 2,666,436 - -1.3 2,666,436 - -3.5 2,666,487 + MIT1002_02391 0.11 -2.6 2,666,774 - -0.9 2,666,779 + -0.4 2,666,908 - +0.7 2,666,936 + -0.1 2,666,999 - +1.0 2,667,009 + +1.5 2,667,019 + -2.4 2,667,019 + +0.9 2,667,068 + -2.3 2,667,111 - -0.8 2,667,164 + -2.4 2,667,192 - +0.4 2,667,248 - MIT1002_02392 0.12 +0.1 2,667,261 - MIT1002_02392 0.13 -0.6 2,667,310 + MIT1002_02392 0.16 +0.1 2,667,310 + MIT1002_02392 0.16 +1.2 2,667,310 + MIT1002_02392 0.16 -0.6 2,667,310 + MIT1002_02392 0.16 -1.4 2,667,318 - MIT1002_02392 0.17 +0.5 2,667,318 - MIT1002_02392 0.17 -0.4 2,667,362 + MIT1002_02392 0.19 +1.9 2,667,382 + MIT1002_02392 0.20 -0.8 2,667,403 + MIT1002_02392 0.22 +0.4 2,667,443 - MIT1002_02392 0.24 -0.9 2,667,472 + MIT1002_02392 0.26 +0.3 2,667,480 - MIT1002_02392 0.26 -1.7 2,667,515 - MIT1002_02392 0.28 -1.7 2,667,519 + MIT1002_02392 0.29 -1.0 2,667,519 + MIT1002_02392 0.29 -0.3 2,667,527 - MIT1002_02392 0.29 +0.5 2,667,529 + MIT1002_02392 0.29 +0.7 2,667,542 + MIT1002_02392 0.30 -0.5 2,667,542 + MIT1002_02392 0.30 +1.4 2,667,550 - MIT1002_02392 0.31 -0.7 2,667,557 - MIT1002_02392 0.31 +0.6 2,667,579 + MIT1002_02392 0.32 -0.1 2,667,579 + MIT1002_02392 0.32 -0.1 2,667,587 - MIT1002_02392 0.33 +0.2 2,667,594 - MIT1002_02392 0.33 -0.1 2,667,594 - MIT1002_02392 0.33 -0.0 2,667,594 - MIT1002_02392 0.33 -0.1 2,667,594 - MIT1002_02392 0.33 -0.1 2,667,629 - MIT1002_02392 0.35 -2.1 2,667,659 + MIT1002_02392 0.37 +2.2 2,667,677 + MIT1002_02392 0.38 -1.1 2,667,677 + MIT1002_02392 0.38 -2.5 2,667,683 - MIT1002_02392 0.39 -0.5 2,667,685 - MIT1002_02392 0.39 -2.7 2,667,756 + MIT1002_02392 0.43 -1.0 2,667,761 + MIT1002_02392 0.43 +0.0 2,667,761 + MIT1002_02392 0.43 +0.1 2,667,761 + MIT1002_02392 0.43 +1.1 2,667,761 + MIT1002_02392 0.43 -2.8 2,667,761 + MIT1002_02392 0.43 +2.9 2,667,761 + MIT1002_02392 0.43 +0.1 2,667,764 - MIT1002_02392 0.43 -0.2 2,667,769 - MIT1002_02392 0.44 -1.7 2,667,769 - MIT1002_02392 0.44 -2.2 2,667,769 - MIT1002_02392 0.44 -0.1 2,667,769 - MIT1002_02392 0.44 -1.6 2,667,769 - MIT1002_02392 0.44 +0.9 2,667,769 - MIT1002_02392 0.44 +1.3
Or see this region's nucleotide sequence