Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02391

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_02389 and MIT1002_02390 overlap by 11 nucleotidesMIT1002_02390 and MIT1002_02391 are separated by 0 nucleotidesMIT1002_02391 and MIT1002_02392 are separated by 265 nucleotides MIT1002_02389: MIT1002_02389 - hypothetical protein, at 2,663,226 to 2,666,168 _02389 MIT1002_02390: MIT1002_02390 - hypothetical protein, at 2,666,158 to 2,666,451 _02390 MIT1002_02391: MIT1002_02391 - putative membrane protein, at 2,666,452 to 2,666,778 _02391 MIT1002_02392: MIT1002_02392 - Amino-acid carrier protein AlsT, at 2,667,044 to 2,668,702 _02392 Position (kb) 2666 2667Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2665.455 kb on + strand, within MIT1002_02389at 2665.529 kb on + strand, within MIT1002_02389at 2665.529 kb on + strand, within MIT1002_02389at 2665.529 kb on + strand, within MIT1002_02389at 2665.529 kb on + strand, within MIT1002_02389at 2665.537 kb on - strand, within MIT1002_02389at 2665.537 kb on - strand, within MIT1002_02389at 2665.537 kb on - strand, within MIT1002_02389at 2665.537 kb on - strand, within MIT1002_02389at 2665.537 kb on - strand, within MIT1002_02389at 2665.537 kb on - strand, within MIT1002_02389at 2665.537 kb on - strand, within MIT1002_02389at 2665.537 kb on - strand, within MIT1002_02389at 2665.585 kb on + strand, within MIT1002_02389at 2665.631 kb on - strand, within MIT1002_02389at 2665.661 kb on + strand, within MIT1002_02389at 2665.662 kb on + strand, within MIT1002_02389at 2665.740 kb on - strand, within MIT1002_02389at 2665.835 kb on + strand, within MIT1002_02389at 2665.879 kb on - strandat 2665.894 kb on - strandat 2665.909 kb on - strandat 2665.985 kb on + strandat 2665.993 kb on - strandat 2666.022 kb on - strandat 2666.077 kb on + strandat 2666.186 kb on + strandat 2666.194 kb on - strand, within MIT1002_02390at 2666.242 kb on - strand, within MIT1002_02390at 2666.245 kb on + strand, within MIT1002_02390at 2666.281 kb on - strand, within MIT1002_02390at 2666.330 kb on + strand, within MIT1002_02390at 2666.358 kb on - strand, within MIT1002_02390at 2666.406 kb on + strand, within MIT1002_02390at 2666.428 kb on + strandat 2666.436 kb on - strandat 2666.436 kb on - strandat 2666.487 kb on + strand, within MIT1002_02391at 2666.774 kb on - strandat 2666.779 kb on + strandat 2666.908 kb on - strandat 2666.936 kb on + strandat 2666.999 kb on - strandat 2667.009 kb on + strandat 2667.019 kb on + strandat 2667.019 kb on + strandat 2667.068 kb on + strandat 2667.111 kb on - strandat 2667.164 kb on + strandat 2667.192 kb on - strandat 2667.248 kb on - strand, within MIT1002_02392at 2667.261 kb on - strand, within MIT1002_02392at 2667.310 kb on + strand, within MIT1002_02392at 2667.310 kb on + strand, within MIT1002_02392at 2667.310 kb on + strand, within MIT1002_02392at 2667.310 kb on + strand, within MIT1002_02392at 2667.318 kb on - strand, within MIT1002_02392at 2667.318 kb on - strand, within MIT1002_02392at 2667.362 kb on + strand, within MIT1002_02392at 2667.382 kb on + strand, within MIT1002_02392at 2667.403 kb on + strand, within MIT1002_02392at 2667.443 kb on - strand, within MIT1002_02392at 2667.472 kb on + strand, within MIT1002_02392at 2667.480 kb on - strand, within MIT1002_02392at 2667.515 kb on - strand, within MIT1002_02392at 2667.519 kb on + strand, within MIT1002_02392at 2667.519 kb on + strand, within MIT1002_02392at 2667.527 kb on - strand, within MIT1002_02392at 2667.529 kb on + strand, within MIT1002_02392at 2667.542 kb on + strand, within MIT1002_02392at 2667.542 kb on + strand, within MIT1002_02392at 2667.550 kb on - strand, within MIT1002_02392at 2667.557 kb on - strand, within MIT1002_02392at 2667.579 kb on + strand, within MIT1002_02392at 2667.579 kb on + strand, within MIT1002_02392at 2667.587 kb on - strand, within MIT1002_02392at 2667.594 kb on - strand, within MIT1002_02392at 2667.594 kb on - strand, within MIT1002_02392at 2667.594 kb on - strand, within MIT1002_02392at 2667.594 kb on - strand, within MIT1002_02392at 2667.629 kb on - strand, within MIT1002_02392at 2667.659 kb on + strand, within MIT1002_02392at 2667.677 kb on + strand, within MIT1002_02392at 2667.677 kb on + strand, within MIT1002_02392at 2667.683 kb on - strand, within MIT1002_02392at 2667.685 kb on - strand, within MIT1002_02392at 2667.756 kb on + strand, within MIT1002_02392at 2667.761 kb on + strand, within MIT1002_02392at 2667.761 kb on + strand, within MIT1002_02392at 2667.761 kb on + strand, within MIT1002_02392at 2667.761 kb on + strand, within MIT1002_02392at 2667.761 kb on + strand, within MIT1002_02392at 2667.761 kb on + strand, within MIT1002_02392at 2667.764 kb on - strand, within MIT1002_02392at 2667.769 kb on - strand, within MIT1002_02392at 2667.769 kb on - strand, within MIT1002_02392at 2667.769 kb on - strand, within MIT1002_02392at 2667.769 kb on - strand, within MIT1002_02392at 2667.769 kb on - strand, within MIT1002_02392at 2667.769 kb on - strand, within MIT1002_02392

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6
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2,665,455 + MIT1002_02389 0.76 -0.3
2,665,529 + MIT1002_02389 0.78 +0.7
2,665,529 + MIT1002_02389 0.78 +2.1
2,665,529 + MIT1002_02389 0.78 -0.1
2,665,529 + MIT1002_02389 0.78 -0.7
2,665,537 - MIT1002_02389 0.79 -1.0
2,665,537 - MIT1002_02389 0.79 -1.0
2,665,537 - MIT1002_02389 0.79 +0.5
2,665,537 - MIT1002_02389 0.79 -0.6
2,665,537 - MIT1002_02389 0.79 -1.4
2,665,537 - MIT1002_02389 0.79 -0.6
2,665,537 - MIT1002_02389 0.79 +1.4
2,665,537 - MIT1002_02389 0.79 -0.2
2,665,585 + MIT1002_02389 0.80 -1.1
2,665,631 - MIT1002_02389 0.82 +0.8
2,665,661 + MIT1002_02389 0.83 -1.4
2,665,662 + MIT1002_02389 0.83 -0.5
2,665,740 - MIT1002_02389 0.85 -0.2
2,665,835 + MIT1002_02389 0.89 -0.2
2,665,879 - -1.4
2,665,894 - +0.5
2,665,909 - -0.5
2,665,985 + -0.1
2,665,993 - -0.6
2,666,022 - -1.2
2,666,077 + +1.0
2,666,186 + -0.1
2,666,194 - MIT1002_02390 0.12 +0.7
2,666,242 - MIT1002_02390 0.29 -2.8
2,666,245 + MIT1002_02390 0.30 +0.1
2,666,281 - MIT1002_02390 0.42 -3.4
2,666,330 + MIT1002_02390 0.59 -0.4
2,666,358 - MIT1002_02390 0.68 -1.8
2,666,406 + MIT1002_02390 0.84 -3.2
2,666,428 + -2.1
2,666,436 - -1.3
2,666,436 - -3.5
2,666,487 + MIT1002_02391 0.11 -2.6
2,666,774 - -0.9
2,666,779 + -0.4
2,666,908 - +0.7
2,666,936 + -0.1
2,666,999 - +1.0
2,667,009 + +1.5
2,667,019 + -2.4
2,667,019 + +0.9
2,667,068 + -2.3
2,667,111 - -0.8
2,667,164 + -2.4
2,667,192 - +0.4
2,667,248 - MIT1002_02392 0.12 +0.1
2,667,261 - MIT1002_02392 0.13 -0.6
2,667,310 + MIT1002_02392 0.16 +0.1
2,667,310 + MIT1002_02392 0.16 +1.2
2,667,310 + MIT1002_02392 0.16 -0.6
2,667,310 + MIT1002_02392 0.16 -1.4
2,667,318 - MIT1002_02392 0.17 +0.5
2,667,318 - MIT1002_02392 0.17 -0.4
2,667,362 + MIT1002_02392 0.19 +1.9
2,667,382 + MIT1002_02392 0.20 -0.8
2,667,403 + MIT1002_02392 0.22 +0.4
2,667,443 - MIT1002_02392 0.24 -0.9
2,667,472 + MIT1002_02392 0.26 +0.3
2,667,480 - MIT1002_02392 0.26 -1.7
2,667,515 - MIT1002_02392 0.28 -1.7
2,667,519 + MIT1002_02392 0.29 -1.0
2,667,519 + MIT1002_02392 0.29 -0.3
2,667,527 - MIT1002_02392 0.29 +0.5
2,667,529 + MIT1002_02392 0.29 +0.7
2,667,542 + MIT1002_02392 0.30 -0.5
2,667,542 + MIT1002_02392 0.30 +1.4
2,667,550 - MIT1002_02392 0.31 -0.7
2,667,557 - MIT1002_02392 0.31 +0.6
2,667,579 + MIT1002_02392 0.32 -0.1
2,667,579 + MIT1002_02392 0.32 -0.1
2,667,587 - MIT1002_02392 0.33 +0.2
2,667,594 - MIT1002_02392 0.33 -0.1
2,667,594 - MIT1002_02392 0.33 -0.0
2,667,594 - MIT1002_02392 0.33 -0.1
2,667,594 - MIT1002_02392 0.33 -0.1
2,667,629 - MIT1002_02392 0.35 -2.1
2,667,659 + MIT1002_02392 0.37 +2.2
2,667,677 + MIT1002_02392 0.38 -1.1
2,667,677 + MIT1002_02392 0.38 -2.5
2,667,683 - MIT1002_02392 0.39 -0.5
2,667,685 - MIT1002_02392 0.39 -2.7
2,667,756 + MIT1002_02392 0.43 -1.0
2,667,761 + MIT1002_02392 0.43 +0.0
2,667,761 + MIT1002_02392 0.43 +0.1
2,667,761 + MIT1002_02392 0.43 +1.1
2,667,761 + MIT1002_02392 0.43 -2.8
2,667,761 + MIT1002_02392 0.43 +2.9
2,667,761 + MIT1002_02392 0.43 +0.1
2,667,764 - MIT1002_02392 0.43 -0.2
2,667,769 - MIT1002_02392 0.44 -1.7
2,667,769 - MIT1002_02392 0.44 -2.2
2,667,769 - MIT1002_02392 0.44 -0.1
2,667,769 - MIT1002_02392 0.44 -1.6
2,667,769 - MIT1002_02392 0.44 +0.9
2,667,769 - MIT1002_02392 0.44 +1.3

Or see this region's nucleotide sequence