Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02184

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_02183 and MIT1002_02184 are separated by 115 nucleotidesMIT1002_02184 and MIT1002_02185 are separated by 6 nucleotides MIT1002_02183: MIT1002_02183 - Alanine dehydrogenase, at 2,438,934 to 2,440,067 _02183 MIT1002_02184: MIT1002_02184 - Orotidine 5'-phosphate decarboxylase, at 2,440,183 to 2,440,881 _02184 MIT1002_02185: MIT1002_02185 - tetratricopeptide repeat protein, at 2,440,888 to 2,442,057 _02185 Position (kb) 2440 2441Strain fitness (log2 ratio) -3 -2 -1 0 1at 2439.195 kb on + strand, within MIT1002_02183at 2439.204 kb on + strand, within MIT1002_02183at 2439.204 kb on + strand, within MIT1002_02183at 2439.204 kb on + strand, within MIT1002_02183at 2439.211 kb on - strand, within MIT1002_02183at 2439.212 kb on - strand, within MIT1002_02183at 2439.212 kb on - strand, within MIT1002_02183at 2439.212 kb on - strand, within MIT1002_02183at 2439.212 kb on - strand, within MIT1002_02183at 2439.212 kb on - strand, within MIT1002_02183at 2439.239 kb on - strand, within MIT1002_02183at 2439.272 kb on - strand, within MIT1002_02183at 2439.357 kb on + strand, within MIT1002_02183at 2439.385 kb on - strand, within MIT1002_02183at 2439.435 kb on - strand, within MIT1002_02183at 2439.465 kb on + strand, within MIT1002_02183at 2439.606 kb on + strand, within MIT1002_02183at 2439.619 kb on - strand, within MIT1002_02183at 2439.648 kb on + strand, within MIT1002_02183at 2439.656 kb on - strand, within MIT1002_02183at 2439.686 kb on - strand, within MIT1002_02183at 2439.703 kb on - strand, within MIT1002_02183at 2439.763 kb on + strand, within MIT1002_02183at 2439.780 kb on + strand, within MIT1002_02183at 2439.783 kb on - strand, within MIT1002_02183at 2439.788 kb on - strand, within MIT1002_02183at 2439.788 kb on - strand, within MIT1002_02183at 2439.788 kb on - strand, within MIT1002_02183at 2439.818 kb on + strand, within MIT1002_02183at 2439.958 kb on + strandat 2439.958 kb on + strandat 2439.989 kb on - strandat 2439.994 kb on - strandat 2439.994 kb on - strandat 2439.996 kb on + strandat 2440.038 kb on - strandat 2440.039 kb on - strandat 2440.059 kb on + strandat 2440.151 kb on - strandat 2440.181 kb on + strandat 2440.228 kb on + strandat 2440.228 kb on - strandat 2440.423 kb on + strand, within MIT1002_02184at 2440.423 kb on + strand, within MIT1002_02184at 2440.476 kb on + strand, within MIT1002_02184at 2440.790 kb on - strand, within MIT1002_02184at 2440.849 kb on + strandat 2440.880 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6
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2,439,195 + MIT1002_02183 0.23 +1.4
2,439,204 + MIT1002_02183 0.24 -2.4
2,439,204 + MIT1002_02183 0.24 -0.0
2,439,204 + MIT1002_02183 0.24 -1.3
2,439,211 - MIT1002_02183 0.24 +1.3
2,439,212 - MIT1002_02183 0.25 -1.0
2,439,212 - MIT1002_02183 0.25 -2.1
2,439,212 - MIT1002_02183 0.25 -2.2
2,439,212 - MIT1002_02183 0.25 -0.7
2,439,212 - MIT1002_02183 0.25 -1.7
2,439,239 - MIT1002_02183 0.27 -1.1
2,439,272 - MIT1002_02183 0.30 +0.6
2,439,357 + MIT1002_02183 0.37 -0.5
2,439,385 - MIT1002_02183 0.40 -2.4
2,439,435 - MIT1002_02183 0.44 +0.7
2,439,465 + MIT1002_02183 0.47 +0.4
2,439,606 + MIT1002_02183 0.59 -1.9
2,439,619 - MIT1002_02183 0.60 +0.3
2,439,648 + MIT1002_02183 0.63 +0.2
2,439,656 - MIT1002_02183 0.64 +1.0
2,439,686 - MIT1002_02183 0.66 +0.7
2,439,703 - MIT1002_02183 0.68 -0.9
2,439,763 + MIT1002_02183 0.73 +1.2
2,439,780 + MIT1002_02183 0.75 +0.4
2,439,783 - MIT1002_02183 0.75 -1.3
2,439,788 - MIT1002_02183 0.75 +0.5
2,439,788 - MIT1002_02183 0.75 -0.2
2,439,788 - MIT1002_02183 0.75 +1.4
2,439,818 + MIT1002_02183 0.78 -2.1
2,439,958 + +0.4
2,439,958 + -1.5
2,439,989 - -0.6
2,439,994 - -2.1
2,439,994 - -0.6
2,439,996 + +0.3
2,440,038 - -0.3
2,440,039 - -2.4
2,440,059 + +1.0
2,440,151 - -1.3
2,440,181 + -1.2
2,440,228 + +0.1
2,440,228 - -2.8
2,440,423 + MIT1002_02184 0.34 -1.8
2,440,423 + MIT1002_02184 0.34 -1.4
2,440,476 + MIT1002_02184 0.42 -0.9
2,440,790 - MIT1002_02184 0.87 -0.7
2,440,849 + +0.4
2,440,880 - -0.6

Or see this region's nucleotide sequence