Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02124

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6
2,384,341	-		MIT1002_02122	0.54	-0.9
2,384,392	+		MIT1002_02122	0.66	+0.2
2,384,397	+		MIT1002_02122	0.68	-2.0
2,384,400	-		MIT1002_02122	0.68	+1.5
2,384,426	-		MIT1002_02122	0.74	-0.9
2,384,452	+		MIT1002_02122	0.81	+0.7
2,384,452	+		MIT1002_02122	0.81	+0.7
2,384,463	+		MIT1002_02122	0.83	+1.2
2,384,471	-		MIT1002_02122	0.85	+0.5
2,384,498	-				+0.9
2,384,533	-				-1.9
2,384,640	-				-2.0
2,384,780	+				+1.1
2,384,810	+		MIT1002_02123	0.15	-0.7
2,384,810	+		MIT1002_02123	0.15	+1.1
2,384,810	+		MIT1002_02123	0.15	-0.9
2,384,818	-		MIT1002_02123	0.17	+1.0
2,384,821	+		MIT1002_02123	0.18	+0.6
2,384,868	+		MIT1002_02123	0.27	-0.7
2,384,877	-		MIT1002_02123	0.29	+1.5
2,385,150	+		MIT1002_02123	0.87	-0.6
2,385,163	-		MIT1002_02123	0.89	-1.0
2,385,220	+				-0.6
2,385,228	-				+0.1
2,385,244	+				-1.0
2,385,275	-				-0.3
2,385,342	+				-0.7
2,385,342	+				+2.1
2,385,342	+				-1.9
2,385,342	+				+0.3
2,385,342	+				-0.7
2,385,342	+				+1.0
2,385,342	+				-0.6
2,385,342	+				-1.6
2,385,349	-				+0.7
2,385,350	-				-0.3
2,385,350	-				-2.0
2,385,350	-				-2.2
2,385,350	-				-0.8
2,385,455	+				+1.0
2,385,455	+				+1.2
2,385,455	+				-1.3
2,385,463	-		MIT1002_02124	0.10	-1.0
2,385,463	-		MIT1002_02124	0.10	-1.3
2,385,463	-		MIT1002_02124	0.10	-0.3
2,385,463	-		MIT1002_02124	0.10	-0.4
2,385,463	-		MIT1002_02124	0.10	+0.3
2,385,463	-		MIT1002_02124	0.10	-0.9
2,385,463	-		MIT1002_02124	0.10	+0.2
2,385,465	+		MIT1002_02124	0.11	-0.9
2,385,524	-		MIT1002_02124	0.14	+2.1
2,385,541	-		MIT1002_02124	0.15	+0.6
2,385,598	+		MIT1002_02124	0.19	-2.6
2,385,615	+		MIT1002_02124	0.20	-0.5
2,385,615	+		MIT1002_02124	0.20	-0.8
2,385,630	+		MIT1002_02124	0.21	-0.1
2,385,638	-		MIT1002_02124	0.21	+0.3
2,385,640	-		MIT1002_02124	0.21	+0.1
2,385,647	+		MIT1002_02124	0.22	+0.2
2,385,678	-		MIT1002_02124	0.24	-0.0
2,385,688	-		MIT1002_02124	0.24	+1.7
2,385,835	+		MIT1002_02124	0.33	-0.2
2,385,842	+		MIT1002_02124	0.34	-0.1
2,385,843	-		MIT1002_02124	0.34	-2.5
2,385,850	-		MIT1002_02124	0.34	-0.6
2,385,852	+		MIT1002_02124	0.34	-0.1
2,385,852	+		MIT1002_02124	0.34	-0.1
2,385,877	+		MIT1002_02124	0.36	+0.7
2,385,885	-		MIT1002_02124	0.36	+2.4
2,385,910	-		MIT1002_02124	0.38	-2.4
2,385,912	+		MIT1002_02124	0.38	-1.2
2,385,920	-		MIT1002_02124	0.38	-0.9
2,385,956	+		MIT1002_02124	0.41	+1.3
2,385,956	+		MIT1002_02124	0.41	-2.3
2,385,956	+		MIT1002_02124	0.41	-1.7
2,385,956	+		MIT1002_02124	0.41	+2.0
2,385,956	+		MIT1002_02124	0.41	+1.0
2,385,964	-		MIT1002_02124	0.41	-0.4
2,385,976	-		MIT1002_02124	0.42	+1.3
2,385,999	+		MIT1002_02124	0.43	-2.1
2,386,007	-		MIT1002_02124	0.44	-0.3
2,386,013	+		MIT1002_02124	0.44	-1.3
2,386,086	-		MIT1002_02124	0.49	-0.6
2,386,341	+		MIT1002_02124	0.64	+0.5
2,386,348	+		MIT1002_02124	0.65	-0.6
2,386,355	-		MIT1002_02124	0.65	-0.2
2,386,356	-		MIT1002_02124	0.65	+0.6
2,386,362	+		MIT1002_02124	0.66	+0.1
2,386,362	+		MIT1002_02124	0.66	-0.8
2,386,362	+		MIT1002_02124	0.66	-0.7
2,386,362	+		MIT1002_02124	0.66	-2.2
2,386,365	-		MIT1002_02124	0.66	-0.1
2,386,397	+		MIT1002_02124	0.68	+0.1
2,386,397	+		MIT1002_02124	0.68	+0.1
2,386,397	+		MIT1002_02124	0.68	-0.8
2,386,397	+		MIT1002_02124	0.68	+1.4
2,386,405	-		MIT1002_02124	0.68	-0.9
2,386,493	+		MIT1002_02124	0.74	+0.4
2,386,496	+		MIT1002_02124	0.74	+0.4
2,386,555	-		MIT1002_02124	0.77	-1.5
2,386,598	+		MIT1002_02124	0.80	+0.7
2,386,705	-		MIT1002_02124	0.87	-0.7
2,386,707	-		MIT1002_02124	0.87	+1.4
2,386,716	+		MIT1002_02124	0.87	-2.5
2,386,717	-		MIT1002_02124	0.87	-0.0
2,386,722	+		MIT1002_02124	0.88	+1.1
2,386,724	-		MIT1002_02124	0.88	+2.9
2,386,731	-		MIT1002_02124	0.88	+0.2
2,386,733	+		MIT1002_02124	0.88	-2.6
2,386,745	-		MIT1002_02124	0.89	-0.7
2,386,893	+				-0.7
2,386,894	+				-1.1
2,386,902	-				-0.8
2,386,902	-				+1.0
2,386,921	+				-0.2
2,386,971	+				+1.0
2,387,194	+				+0.7
2,387,218	-				-1.8
2,387,223	-				-1.3
2,387,330	-				+0.4
2,387,342	+				-0.2
2,387,423	+		MIT1002_02125	0.10	-0.7
2,387,431	-		MIT1002_02125	0.11	-0.3
2,387,431	-		MIT1002_02125	0.11	+0.4
2,387,441	-		MIT1002_02125	0.11	-1.0
2,387,515	-		MIT1002_02125	0.16	-0.1
2,387,533	-		MIT1002_02125	0.17	-1.5
2,387,633	-		MIT1002_02125	0.24	+0.5
2,387,760	+		MIT1002_02125	0.32	+1.3
2,387,776	-		MIT1002_02125	0.33	-0.5
2,387,804	-		MIT1002_02125	0.34	-0.3
2,387,853	+		MIT1002_02125	0.38	-1.9
2,387,853	+		MIT1002_02125	0.38	+0.7
2,387,905	-		MIT1002_02125	0.41	-1.1
2,387,913	+		MIT1002_02125	0.41	-0.1
2,387,913	+		MIT1002_02125	0.41	+1.5