Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02012

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_02011 and MIT1002_02012 are separated by 500 nucleotidesMIT1002_02012 and MIT1002_02013 overlap by 1 nucleotidesMIT1002_02013 and MIT1002_02014 are separated by 16 nucleotides MIT1002_02011: MIT1002_02011 - Minor extracellular protease vpr precursor, at 2,248,468 to 2,252,433 _02011 MIT1002_02012: MIT1002_02012 - Pyruvate dehydrogenase E1 component subunit alpha, at 2,252,934 to 2,254,121 _02012 MIT1002_02013: MIT1002_02013 - 2-oxoisovalerate dehydrogenase subunit beta, at 2,254,121 to 2,255,098 _02013 MIT1002_02014: MIT1002_02014 - Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, at 2,255,115 to 2,256,815 _02014 Position (kb) 2252 2253 2254 2255Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3at 2251.938 kb on - strand, within MIT1002_02011at 2251.981 kb on + strand, within MIT1002_02011at 2252.042 kb on + strandat 2252.042 kb on + strandat 2252.042 kb on - strandat 2252.050 kb on - strandat 2252.050 kb on - strandat 2252.087 kb on - strandat 2252.104 kb on + strandat 2252.131 kb on - strandat 2252.131 kb on - strandat 2252.220 kb on - strandat 2252.258 kb on - strandat 2252.264 kb on - strandat 2252.329 kb on - strandat 2252.329 kb on - strandat 2252.329 kb on - strandat 2252.331 kb on + strandat 2252.339 kb on - strandat 2252.339 kb on - strandat 2252.339 kb on - strandat 2252.374 kb on + strandat 2252.375 kb on + strandat 2252.379 kb on + strandat 2252.382 kb on - strandat 2252.398 kb on - strandat 2252.442 kb on - strandat 2252.540 kb on - strandat 2252.623 kb on - strandat 2252.654 kb on + strandat 2252.694 kb on + strandat 2252.728 kb on + strandat 2252.903 kb on + strandat 2253.018 kb on + strandat 2253.018 kb on - strandat 2253.072 kb on - strand, within MIT1002_02012at 2253.116 kb on + strand, within MIT1002_02012at 2253.141 kb on - strand, within MIT1002_02012at 2253.141 kb on - strand, within MIT1002_02012at 2253.141 kb on - strand, within MIT1002_02012at 2253.179 kb on + strand, within MIT1002_02012at 2253.182 kb on + strand, within MIT1002_02012at 2253.187 kb on - strand, within MIT1002_02012at 2253.187 kb on - strand, within MIT1002_02012at 2253.190 kb on + strand, within MIT1002_02012at 2253.197 kb on - strand, within MIT1002_02012at 2253.244 kb on - strand, within MIT1002_02012at 2253.300 kb on - strand, within MIT1002_02012at 2253.300 kb on - strand, within MIT1002_02012at 2253.348 kb on + strand, within MIT1002_02012at 2253.370 kb on + strand, within MIT1002_02012at 2253.488 kb on - strand, within MIT1002_02012at 2253.514 kb on - strand, within MIT1002_02012at 2253.528 kb on + strand, within MIT1002_02012at 2253.528 kb on + strand, within MIT1002_02012at 2253.528 kb on + strand, within MIT1002_02012at 2253.528 kb on + strand, within MIT1002_02012at 2253.528 kb on + strand, within MIT1002_02012at 2253.528 kb on + strand, within MIT1002_02012at 2253.528 kb on + strand, within MIT1002_02012at 2253.528 kb on + strand, within MIT1002_02012at 2253.536 kb on - strand, within MIT1002_02012at 2253.536 kb on - strand, within MIT1002_02012at 2253.536 kb on - strand, within MIT1002_02012at 2253.536 kb on - strand, within MIT1002_02012at 2253.536 kb on - strand, within MIT1002_02012at 2253.546 kb on + strand, within MIT1002_02012at 2253.546 kb on + strand, within MIT1002_02012at 2253.554 kb on - strand, within MIT1002_02012at 2253.554 kb on - strand, within MIT1002_02012at 2253.698 kb on + strand, within MIT1002_02012at 2253.698 kb on - strand, within MIT1002_02012at 2253.756 kb on - strand, within MIT1002_02012at 2253.837 kb on + strand, within MIT1002_02012at 2253.845 kb on - strand, within MIT1002_02012at 2253.940 kb on + strand, within MIT1002_02012at 2253.957 kb on + strand, within MIT1002_02012at 2254.022 kb on - strandat 2254.094 kb on + strandat 2254.094 kb on + strandat 2254.094 kb on + strandat 2254.129 kb on + strandat 2254.160 kb on - strandat 2254.170 kb on - strandat 2254.170 kb on - strandat 2254.219 kb on + strand, within MIT1002_02013at 2254.227 kb on - strand, within MIT1002_02013at 2254.231 kb on + strand, within MIT1002_02013at 2254.341 kb on + strand, within MIT1002_02013at 2254.341 kb on + strand, within MIT1002_02013at 2254.349 kb on - strand, within MIT1002_02013at 2254.352 kb on - strand, within MIT1002_02013at 2254.415 kb on + strand, within MIT1002_02013at 2254.475 kb on + strand, within MIT1002_02013at 2254.531 kb on - strand, within MIT1002_02013at 2254.547 kb on + strand, within MIT1002_02013at 2254.547 kb on + strand, within MIT1002_02013at 2254.547 kb on + strand, within MIT1002_02013at 2254.550 kb on - strand, within MIT1002_02013at 2254.555 kb on - strand, within MIT1002_02013at 2254.565 kb on - strand, within MIT1002_02013at 2254.566 kb on + strand, within MIT1002_02013at 2254.590 kb on - strand, within MIT1002_02013at 2254.590 kb on - strand, within MIT1002_02013at 2254.597 kb on - strand, within MIT1002_02013at 2254.647 kb on - strand, within MIT1002_02013at 2254.673 kb on - strand, within MIT1002_02013at 2254.796 kb on + strand, within MIT1002_02013at 2254.836 kb on + strand, within MIT1002_02013at 2254.846 kb on - strand, within MIT1002_02013at 2254.862 kb on + strand, within MIT1002_02013at 2254.921 kb on - strand, within MIT1002_02013at 2254.997 kb on + strand, within MIT1002_02013at 2255.012 kb on - strandat 2255.072 kb on + strandat 2255.095 kb on - strandat 2255.100 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6
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2,251,938 - MIT1002_02011 0.87 -2.6
2,251,981 + MIT1002_02011 0.89 -0.3
2,252,042 + -2.2
2,252,042 + +3.5
2,252,042 - -1.7
2,252,050 - +1.3
2,252,050 - -2.0
2,252,087 - -0.6
2,252,104 + -0.7
2,252,131 - +0.3
2,252,131 - +0.7
2,252,220 - -2.6
2,252,258 - +0.1
2,252,264 - -0.5
2,252,329 - -0.1
2,252,329 - -1.1
2,252,329 - +0.8
2,252,331 + +0.6
2,252,339 - -0.6
2,252,339 - -4.1
2,252,339 - +0.1
2,252,374 + -1.7
2,252,375 + +1.3
2,252,379 + +0.2
2,252,382 - -1.4
2,252,398 - -0.5
2,252,442 - +0.9
2,252,540 - -1.2
2,252,623 - -0.8
2,252,654 + -1.5
2,252,694 + -0.6
2,252,728 + -1.0
2,252,903 + +0.4
2,253,018 + -2.4
2,253,018 - -1.0
2,253,072 - MIT1002_02012 0.12 -1.5
2,253,116 + MIT1002_02012 0.15 -1.1
2,253,141 - MIT1002_02012 0.17 -0.1
2,253,141 - MIT1002_02012 0.17 -1.1
2,253,141 - MIT1002_02012 0.17 -1.5
2,253,179 + MIT1002_02012 0.21 -2.8
2,253,182 + MIT1002_02012 0.21 -3.0
2,253,187 - MIT1002_02012 0.21 -1.5
2,253,187 - MIT1002_02012 0.21 -4.5
2,253,190 + MIT1002_02012 0.22 -2.0
2,253,197 - MIT1002_02012 0.22 -3.2
2,253,244 - MIT1002_02012 0.26 -2.8
2,253,300 - MIT1002_02012 0.31 -4.6
2,253,300 - MIT1002_02012 0.31 -6.1
2,253,348 + MIT1002_02012 0.35 -1.2
2,253,370 + MIT1002_02012 0.37 -1.0
2,253,488 - MIT1002_02012 0.47 -2.2
2,253,514 - MIT1002_02012 0.49 -3.3
2,253,528 + MIT1002_02012 0.50 -2.9
2,253,528 + MIT1002_02012 0.50 -2.8
2,253,528 + MIT1002_02012 0.50 -2.0
2,253,528 + MIT1002_02012 0.50 -3.2
2,253,528 + MIT1002_02012 0.50 -3.5
2,253,528 + MIT1002_02012 0.50 -3.4
2,253,528 + MIT1002_02012 0.50 -4.8
2,253,528 + MIT1002_02012 0.50 -0.1
2,253,536 - MIT1002_02012 0.51 -1.6
2,253,536 - MIT1002_02012 0.51 -1.3
2,253,536 - MIT1002_02012 0.51 -2.8
2,253,536 - MIT1002_02012 0.51 -1.4
2,253,536 - MIT1002_02012 0.51 -2.4
2,253,546 + MIT1002_02012 0.52 -2.8
2,253,546 + MIT1002_02012 0.52 -3.7
2,253,554 - MIT1002_02012 0.52 -1.9
2,253,554 - MIT1002_02012 0.52 -0.1
2,253,698 + MIT1002_02012 0.64 -4.6
2,253,698 - MIT1002_02012 0.64 -3.3
2,253,756 - MIT1002_02012 0.69 -0.1
2,253,837 + MIT1002_02012 0.76 -2.7
2,253,845 - MIT1002_02012 0.77 +0.4
2,253,940 + MIT1002_02012 0.85 -3.0
2,253,957 + MIT1002_02012 0.86 -1.9
2,254,022 - -1.7
2,254,094 + +2.7
2,254,094 + +1.6
2,254,094 + +1.0
2,254,129 + +1.0
2,254,160 - -1.9
2,254,170 - -0.3
2,254,170 - -1.8
2,254,219 + MIT1002_02013 0.10 -3.0
2,254,227 - MIT1002_02013 0.11 -2.6
2,254,231 + MIT1002_02013 0.11 -2.4
2,254,341 + MIT1002_02013 0.22 -2.1
2,254,341 + MIT1002_02013 0.22 -2.5
2,254,349 - MIT1002_02013 0.23 -1.2
2,254,352 - MIT1002_02013 0.24 -6.2
2,254,415 + MIT1002_02013 0.30 -2.5
2,254,475 + MIT1002_02013 0.36 -2.5
2,254,531 - MIT1002_02013 0.42 -1.5
2,254,547 + MIT1002_02013 0.44 -1.5
2,254,547 + MIT1002_02013 0.44 -3.2
2,254,547 + MIT1002_02013 0.44 -3.1
2,254,550 - MIT1002_02013 0.44 -2.0
2,254,555 - MIT1002_02013 0.44 -1.0
2,254,565 - MIT1002_02013 0.45 -2.3
2,254,566 + MIT1002_02013 0.46 -0.6
2,254,590 - MIT1002_02013 0.48 +0.1
2,254,590 - MIT1002_02013 0.48 -3.1
2,254,597 - MIT1002_02013 0.49 -0.5
2,254,647 - MIT1002_02013 0.54 -2.8
2,254,673 - MIT1002_02013 0.56 +0.7
2,254,796 + MIT1002_02013 0.69 -2.9
2,254,836 + MIT1002_02013 0.73 -0.1
2,254,846 - MIT1002_02013 0.74 -2.3
2,254,862 + MIT1002_02013 0.76 -3.9
2,254,921 - MIT1002_02013 0.82 -2.5
2,254,997 + MIT1002_02013 0.90 -4.9
2,255,012 - -1.6
2,255,072 + -0.9
2,255,095 - -6.0
2,255,100 - -2.9

Or see this region's nucleotide sequence