Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01984

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_01983 and MIT1002_01984 are separated by 66 nucleotidesMIT1002_01984 and MIT1002_01985 are separated by 38 nucleotides MIT1002_01983: MIT1002_01983 - Nucleoid-associated protein YejK, at 2,217,784 to 2,218,890 _01983 MIT1002_01984: MIT1002_01984 - queuosine biosynthesis protein QueD, at 2,218,957 to 2,219,832 _01984 MIT1002_01985: MIT1002_01985 - Murein hydrolase activator NlpD precursor, at 2,219,871 to 2,220,779 _01985 Position (kb) 2218 2219 2220Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1 2at 2218.020 kb on - strand, within MIT1002_01983at 2218.052 kb on + strand, within MIT1002_01983at 2218.052 kb on + strand, within MIT1002_01983at 2218.059 kb on + strand, within MIT1002_01983at 2218.060 kb on - strand, within MIT1002_01983at 2218.060 kb on - strand, within MIT1002_01983at 2218.060 kb on - strand, within MIT1002_01983at 2218.102 kb on + strand, within MIT1002_01983at 2218.144 kb on + strand, within MIT1002_01983at 2218.247 kb on - strand, within MIT1002_01983at 2218.264 kb on + strand, within MIT1002_01983at 2218.274 kb on - strand, within MIT1002_01983at 2218.305 kb on - strand, within MIT1002_01983at 2218.411 kb on - strand, within MIT1002_01983at 2218.421 kb on + strand, within MIT1002_01983at 2218.439 kb on + strand, within MIT1002_01983at 2218.450 kb on - strand, within MIT1002_01983at 2218.477 kb on + strand, within MIT1002_01983at 2218.500 kb on - strand, within MIT1002_01983at 2218.517 kb on + strand, within MIT1002_01983at 2218.762 kb on - strand, within MIT1002_01983at 2218.823 kb on + strandat 2218.857 kb on + strandat 2218.984 kb on + strandat 2218.994 kb on + strandat 2218.994 kb on + strandat 2218.994 kb on + strandat 2218.994 kb on + strandat 2218.994 kb on + strandat 2218.995 kb on + strandat 2219.002 kb on - strandat 2219.002 kb on - strandat 2219.083 kb on + strand, within MIT1002_01984at 2219.159 kb on - strand, within MIT1002_01984at 2219.182 kb on - strand, within MIT1002_01984at 2219.182 kb on - strand, within MIT1002_01984at 2219.206 kb on - strand, within MIT1002_01984at 2219.374 kb on - strand, within MIT1002_01984at 2219.374 kb on - strand, within MIT1002_01984at 2219.469 kb on - strand, within MIT1002_01984at 2219.526 kb on + strand, within MIT1002_01984at 2219.526 kb on + strand, within MIT1002_01984at 2219.526 kb on + strand, within MIT1002_01984at 2219.526 kb on + strand, within MIT1002_01984at 2219.526 kb on + strand, within MIT1002_01984at 2219.534 kb on - strand, within MIT1002_01984at 2219.534 kb on - strand, within MIT1002_01984at 2219.534 kb on - strand, within MIT1002_01984at 2219.546 kb on - strand, within MIT1002_01984at 2219.552 kb on + strand, within MIT1002_01984at 2219.598 kb on + strand, within MIT1002_01984at 2219.605 kb on + strand, within MIT1002_01984at 2219.720 kb on - strand, within MIT1002_01984at 2219.875 kb on + strandat 2219.900 kb on + strandat 2219.926 kb on + strandat 2220.012 kb on + strand, within MIT1002_01985at 2220.012 kb on + strand, within MIT1002_01985at 2220.058 kb on + strand, within MIT1002_01985at 2220.066 kb on - strand, within MIT1002_01985at 2220.066 kb on - strand, within MIT1002_01985at 2220.068 kb on - strand, within MIT1002_01985at 2220.068 kb on - strand, within MIT1002_01985at 2220.094 kb on + strand, within MIT1002_01985at 2220.117 kb on + strand, within MIT1002_01985at 2220.117 kb on + strand, within MIT1002_01985at 2220.353 kb on + strand, within MIT1002_01985at 2220.420 kb on + strand, within MIT1002_01985at 2220.420 kb on + strand, within MIT1002_01985at 2220.420 kb on + strand, within MIT1002_01985at 2220.506 kb on + strand, within MIT1002_01985at 2220.513 kb on + strand, within MIT1002_01985at 2220.513 kb on - strand, within MIT1002_01985at 2220.565 kb on - strand, within MIT1002_01985at 2220.565 kb on - strand, within MIT1002_01985at 2220.565 kb on - strand, within MIT1002_01985at 2220.625 kb on + strand, within MIT1002_01985at 2220.676 kb on + strand, within MIT1002_01985at 2220.694 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6
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2,218,020 - MIT1002_01983 0.21 -1.6
2,218,052 + MIT1002_01983 0.24 -0.3
2,218,052 + MIT1002_01983 0.24 +0.4
2,218,059 + MIT1002_01983 0.25 +0.4
2,218,060 - MIT1002_01983 0.25 -0.1
2,218,060 - MIT1002_01983 0.25 +0.3
2,218,060 - MIT1002_01983 0.25 -0.6
2,218,102 + MIT1002_01983 0.29 -0.1
2,218,144 + MIT1002_01983 0.33 -1.2
2,218,247 - MIT1002_01983 0.42 -1.8
2,218,264 + MIT1002_01983 0.43 +0.7
2,218,274 - MIT1002_01983 0.44 +1.2
2,218,305 - MIT1002_01983 0.47 +0.8
2,218,411 - MIT1002_01983 0.57 -1.7
2,218,421 + MIT1002_01983 0.58 -2.7
2,218,439 + MIT1002_01983 0.59 -1.0
2,218,450 - MIT1002_01983 0.60 -0.6
2,218,477 + MIT1002_01983 0.63 +0.6
2,218,500 - MIT1002_01983 0.65 -2.6
2,218,517 + MIT1002_01983 0.66 +0.1
2,218,762 - MIT1002_01983 0.88 +1.8
2,218,823 + +0.2
2,218,857 + -3.8
2,218,984 + +0.7
2,218,994 + -7.4
2,218,994 + -2.7
2,218,994 + -1.3
2,218,994 + -4.6
2,218,994 + -3.1
2,218,995 + -2.1
2,219,002 - -2.9
2,219,002 - -2.2
2,219,083 + MIT1002_01984 0.14 -1.0
2,219,159 - MIT1002_01984 0.23 -2.1
2,219,182 - MIT1002_01984 0.26 -3.5
2,219,182 - MIT1002_01984 0.26 -1.6
2,219,206 - MIT1002_01984 0.28 -4.6
2,219,374 - MIT1002_01984 0.48 -2.7
2,219,374 - MIT1002_01984 0.48 -1.2
2,219,469 - MIT1002_01984 0.58 +0.4
2,219,526 + MIT1002_01984 0.65 -3.3
2,219,526 + MIT1002_01984 0.65 -2.7
2,219,526 + MIT1002_01984 0.65 -3.9
2,219,526 + MIT1002_01984 0.65 -3.3
2,219,526 + MIT1002_01984 0.65 -2.0
2,219,534 - MIT1002_01984 0.66 -3.5
2,219,534 - MIT1002_01984 0.66 -1.7
2,219,534 - MIT1002_01984 0.66 -0.6
2,219,546 - MIT1002_01984 0.67 -0.9
2,219,552 + MIT1002_01984 0.68 -2.3
2,219,598 + MIT1002_01984 0.73 -3.3
2,219,605 + MIT1002_01984 0.74 -1.1
2,219,720 - MIT1002_01984 0.87 -1.6
2,219,875 + +1.7
2,219,900 + -0.6
2,219,926 + +0.9
2,220,012 + MIT1002_01985 0.16 +1.5
2,220,012 + MIT1002_01985 0.16 -0.1
2,220,058 + MIT1002_01985 0.21 +0.2
2,220,066 - MIT1002_01985 0.21 -0.5
2,220,066 - MIT1002_01985 0.21 +1.2
2,220,068 - MIT1002_01985 0.22 -2.4
2,220,068 - MIT1002_01985 0.22 +0.2
2,220,094 + MIT1002_01985 0.25 -1.5
2,220,117 + MIT1002_01985 0.27 -1.0
2,220,117 + MIT1002_01985 0.27 +0.8
2,220,353 + MIT1002_01985 0.53 +0.4
2,220,420 + MIT1002_01985 0.60 +1.7
2,220,420 + MIT1002_01985 0.60 +2.7
2,220,420 + MIT1002_01985 0.60 -1.7
2,220,506 + MIT1002_01985 0.70 -0.5
2,220,513 + MIT1002_01985 0.71 -1.4
2,220,513 - MIT1002_01985 0.71 +1.2
2,220,565 - MIT1002_01985 0.76 -1.1
2,220,565 - MIT1002_01985 0.76 +0.4
2,220,565 - MIT1002_01985 0.76 -0.8
2,220,625 + MIT1002_01985 0.83 -0.9
2,220,676 + MIT1002_01985 0.89 +0.4
2,220,694 - +0.3

Or see this region's nucleotide sequence