Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01832

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_01830 and MIT1002_01832 are separated by 479 nucleotidesMIT1002_01832 and MIT1002_01833 are separated by 243 nucleotidesMIT1002_01833 and MIT1002_01834 are separated by 24 nucleotides MIT1002_01830: MIT1002_01830 - Isocitrate dehydrogenase [NADP] 2, at 2,039,036 to 2,041,255 _01830 MIT1002_01832: MIT1002_01832 - Cold shock-like protein CspD, at 2,041,735 to 2,041,953 _01832 MIT1002_01833: MIT1002_01833 - ATP-dependent Clp protease adapter protein ClpS, at 2,042,197 to 2,042,517 _01833 MIT1002_01834: MIT1002_01834 - ATP-dependent Clp protease ATP-binding subunit ClpA, at 2,042,542 to 2,044,818 _01834 Position (kb) 2041 2042Strain fitness (log2 ratio) -3 -2 -1 0 1at 2040.786 kb on + strand, within MIT1002_01830at 2040.898 kb on + strand, within MIT1002_01830at 2040.979 kb on + strand, within MIT1002_01830at 2041.025 kb on + strand, within MIT1002_01830at 2041.025 kb on + strand, within MIT1002_01830at 2041.025 kb on + strand, within MIT1002_01830at 2041.025 kb on + strand, within MIT1002_01830at 2041.033 kb on - strand, within MIT1002_01830at 2041.033 kb on - strand, within MIT1002_01830at 2041.033 kb on - strand, within MIT1002_01830at 2041.033 kb on - strand, within MIT1002_01830at 2041.084 kb on + strandat 2041.148 kb on + strandat 2041.190 kb on + strandat 2041.284 kb on + strandat 2041.360 kb on - strandat 2041.384 kb on + strandat 2041.392 kb on - strandat 2041.392 kb on - strandat 2041.395 kb on + strandat 2041.428 kb on - strandat 2041.434 kb on - strandat 2041.453 kb on - strandat 2041.472 kb on + strandat 2041.499 kb on - strandat 2041.580 kb on + strandat 2041.774 kb on + strand, within MIT1002_01832at 2041.795 kb on - strand, within MIT1002_01832at 2041.835 kb on + strand, within MIT1002_01832at 2041.930 kb on - strand, within MIT1002_01832at 2041.955 kb on - strandat 2041.988 kb on + strandat 2041.990 kb on - strandat 2041.998 kb on + strandat 2042.006 kb on - strandat 2042.202 kb on - strandat 2042.301 kb on + strand, within MIT1002_01833at 2042.370 kb on - strand, within MIT1002_01833at 2042.383 kb on - strand, within MIT1002_01833at 2042.456 kb on + strand, within MIT1002_01833at 2042.464 kb on - strand, within MIT1002_01833at 2042.488 kb on + strandat 2042.504 kb on - strandat 2042.519 kb on - strandat 2042.610 kb on + strandat 2042.758 kb on + strandat 2042.759 kb on + strandat 2042.839 kb on + strand, within MIT1002_01834at 2042.844 kb on + strand, within MIT1002_01834at 2042.852 kb on - strand, within MIT1002_01834

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6
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2,040,786 + MIT1002_01830 0.79 -1.7
2,040,898 + MIT1002_01830 0.84 -1.2
2,040,979 + MIT1002_01830 0.88 -1.1
2,041,025 + MIT1002_01830 0.90 -1.3
2,041,025 + MIT1002_01830 0.90 -2.4
2,041,025 + MIT1002_01830 0.90 -2.1
2,041,025 + MIT1002_01830 0.90 -1.7
2,041,033 - MIT1002_01830 0.90 -1.0
2,041,033 - MIT1002_01830 0.90 -2.3
2,041,033 - MIT1002_01830 0.90 -2.6
2,041,033 - MIT1002_01830 0.90 +1.0
2,041,084 + +1.4
2,041,148 + -1.3
2,041,190 + -3.2
2,041,284 + -1.0
2,041,360 - -2.2
2,041,384 + +1.4
2,041,392 - +0.4
2,041,392 - -3.0
2,041,395 + -0.6
2,041,428 - +1.1
2,041,434 - -1.4
2,041,453 - -1.6
2,041,472 + +0.2
2,041,499 - +1.0
2,041,580 + +1.3
2,041,774 + MIT1002_01832 0.18 -0.6
2,041,795 - MIT1002_01832 0.27 -2.8
2,041,835 + MIT1002_01832 0.46 -1.4
2,041,930 - MIT1002_01832 0.89 -1.5
2,041,955 - +0.2
2,041,988 + -1.1
2,041,990 - -3.5
2,041,998 + -1.9
2,042,006 - -2.5
2,042,202 - -2.8
2,042,301 + MIT1002_01833 0.32 -3.6
2,042,370 - MIT1002_01833 0.54 -0.3
2,042,383 - MIT1002_01833 0.58 -1.6
2,042,456 + MIT1002_01833 0.81 +1.5
2,042,464 - MIT1002_01833 0.83 +0.7
2,042,488 + -0.8
2,042,504 - -2.3
2,042,519 - -2.9
2,042,610 + -2.2
2,042,758 + -1.5
2,042,759 + -3.6
2,042,839 + MIT1002_01834 0.13 -2.4
2,042,844 + MIT1002_01834 0.13 -2.7
2,042,852 - MIT1002_01834 0.14 -2.1

Or see this region's nucleotide sequence