Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01736

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_01735 and MIT1002_01736 are separated by 219 nucleotidesMIT1002_01736 and MIT1002_01737 are separated by 113 nucleotides MIT1002_01735: MIT1002_01735 - 3-oxoacyl-[acyl-carrier-protein] synthase 2, at 1,927,063 to 1,928,301 _01735 MIT1002_01736: MIT1002_01736 - Aminodeoxychorismate lyase, at 1,928,521 to 1,929,372 _01736 MIT1002_01737: MIT1002_01737 - putative aminodeoxychorismate lyase, at 1,929,486 to 1,930,505 _01737 Position (kb) 1928 1929 1930Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1928.296 kb on + strandat 1928.296 kb on + strandat 1928.408 kb on + strandat 1928.437 kb on - strandat 1928.443 kb on - strandat 1928.458 kb on + strandat 1928.466 kb on - strandat 1928.617 kb on - strand, within MIT1002_01736at 1928.633 kb on - strand, within MIT1002_01736at 1928.713 kb on + strand, within MIT1002_01736at 1928.729 kb on - strand, within MIT1002_01736at 1928.802 kb on - strand, within MIT1002_01736at 1928.809 kb on + strand, within MIT1002_01736at 1928.844 kb on - strand, within MIT1002_01736at 1928.858 kb on + strand, within MIT1002_01736at 1928.859 kb on + strand, within MIT1002_01736at 1928.859 kb on + strand, within MIT1002_01736at 1928.859 kb on + strand, within MIT1002_01736at 1928.859 kb on + strand, within MIT1002_01736at 1928.859 kb on + strand, within MIT1002_01736at 1928.859 kb on + strand, within MIT1002_01736at 1928.859 kb on + strand, within MIT1002_01736at 1928.859 kb on + strand, within MIT1002_01736at 1928.859 kb on + strand, within MIT1002_01736at 1928.859 kb on + strand, within MIT1002_01736at 1928.859 kb on + strand, within MIT1002_01736at 1928.859 kb on + strand, within MIT1002_01736at 1928.859 kb on + strand, within MIT1002_01736at 1928.859 kb on + strand, within MIT1002_01736at 1928.859 kb on + strand, within MIT1002_01736at 1928.859 kb on + strand, within MIT1002_01736at 1928.859 kb on + strand, within MIT1002_01736at 1928.859 kb on + strand, within MIT1002_01736at 1928.859 kb on + strand, within MIT1002_01736at 1928.859 kb on + strand, within MIT1002_01736at 1928.859 kb on + strand, within MIT1002_01736at 1928.859 kb on - strand, within MIT1002_01736at 1928.867 kb on - strand, within MIT1002_01736at 1928.867 kb on - strand, within MIT1002_01736at 1928.867 kb on - strand, within MIT1002_01736at 1928.867 kb on - strand, within MIT1002_01736at 1928.867 kb on - strand, within MIT1002_01736at 1928.867 kb on - strand, within MIT1002_01736at 1928.867 kb on - strand, within MIT1002_01736at 1928.867 kb on - strand, within MIT1002_01736at 1928.867 kb on - strand, within MIT1002_01736at 1928.867 kb on - strand, within MIT1002_01736at 1928.903 kb on + strand, within MIT1002_01736at 1928.967 kb on - strand, within MIT1002_01736at 1928.967 kb on - strand, within MIT1002_01736at 1928.967 kb on - strand, within MIT1002_01736at 1928.969 kb on + strand, within MIT1002_01736at 1928.969 kb on + strand, within MIT1002_01736at 1928.977 kb on - strand, within MIT1002_01736at 1928.977 kb on - strand, within MIT1002_01736at 1928.977 kb on - strand, within MIT1002_01736at 1929.010 kb on + strand, within MIT1002_01736at 1929.018 kb on - strand, within MIT1002_01736at 1929.020 kb on + strand, within MIT1002_01736at 1929.045 kb on - strand, within MIT1002_01736at 1929.099 kb on - strand, within MIT1002_01736at 1929.247 kb on + strand, within MIT1002_01736at 1929.313 kb on + strandat 1929.317 kb on + strandat 1929.348 kb on + strandat 1929.348 kb on + strandat 1929.348 kb on + strandat 1929.348 kb on + strandat 1929.348 kb on + strandat 1929.348 kb on + strandat 1929.348 kb on + strandat 1929.356 kb on - strandat 1929.356 kb on - strandat 1929.356 kb on - strandat 1929.356 kb on - strandat 1929.480 kb on - strandat 1929.517 kb on - strandat 1929.546 kb on - strandat 1929.628 kb on - strand, within MIT1002_01737at 1929.640 kb on - strand, within MIT1002_01737at 1929.720 kb on + strand, within MIT1002_01737at 1929.745 kb on + strand, within MIT1002_01737at 1929.788 kb on - strand, within MIT1002_01737at 1929.807 kb on + strand, within MIT1002_01737at 1929.837 kb on + strand, within MIT1002_01737at 1929.837 kb on + strand, within MIT1002_01737at 1929.837 kb on + strand, within MIT1002_01737at 1929.837 kb on + strand, within MIT1002_01737at 1929.837 kb on + strand, within MIT1002_01737at 1929.837 kb on + strand, within MIT1002_01737at 1929.838 kb on + strand, within MIT1002_01737at 1929.838 kb on + strand, within MIT1002_01737at 1929.844 kb on + strand, within MIT1002_01737at 1929.844 kb on + strand, within MIT1002_01737at 1929.844 kb on + strand, within MIT1002_01737at 1929.844 kb on + strand, within MIT1002_01737at 1929.844 kb on + strand, within MIT1002_01737at 1929.845 kb on - strand, within MIT1002_01737at 1929.845 kb on - strand, within MIT1002_01737at 1929.845 kb on - strand, within MIT1002_01737at 1929.845 kb on - strand, within MIT1002_01737at 1929.845 kb on - strand, within MIT1002_01737at 1929.845 kb on - strand, within MIT1002_01737at 1929.845 kb on - strand, within MIT1002_01737at 1929.852 kb on - strand, within MIT1002_01737at 1929.852 kb on - strand, within MIT1002_01737at 1929.852 kb on - strand, within MIT1002_01737at 1929.864 kb on - strand, within MIT1002_01737at 1929.864 kb on - strand, within MIT1002_01737at 1929.864 kb on - strand, within MIT1002_01737at 1929.929 kb on + strand, within MIT1002_01737at 1929.929 kb on + strand, within MIT1002_01737at 1929.929 kb on + strand, within MIT1002_01737at 1929.937 kb on - strand, within MIT1002_01737at 1929.937 kb on - strand, within MIT1002_01737at 1929.937 kb on - strand, within MIT1002_01737at 1929.937 kb on - strand, within MIT1002_01737at 1929.937 kb on - strand, within MIT1002_01737at 1929.937 kb on - strand, within MIT1002_01737at 1930.044 kb on - strand, within MIT1002_01737at 1930.081 kb on + strand, within MIT1002_01737at 1930.100 kb on + strand, within MIT1002_01737at 1930.101 kb on + strand, within MIT1002_01737at 1930.121 kb on - strand, within MIT1002_01737at 1930.122 kb on + strand, within MIT1002_01737at 1930.130 kb on - strand, within MIT1002_01737at 1930.130 kb on - strand, within MIT1002_01737at 1930.130 kb on - strand, within MIT1002_01737at 1930.297 kb on - strand, within MIT1002_01737at 1930.308 kb on - strand, within MIT1002_01737at 1930.334 kb on + strand, within MIT1002_01737at 1930.342 kb on - strand, within MIT1002_01737at 1930.347 kb on - strand, within MIT1002_01737

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6
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1,928,296 + -0.2
1,928,296 + -3.1
1,928,408 + -1.0
1,928,437 - -3.2
1,928,443 - -2.4
1,928,458 + -0.3
1,928,466 - -1.2
1,928,617 - MIT1002_01736 0.11 -1.2
1,928,633 - MIT1002_01736 0.13 -5.2
1,928,713 + MIT1002_01736 0.23 -2.0
1,928,729 - MIT1002_01736 0.24 -3.6
1,928,802 - MIT1002_01736 0.33 -2.8
1,928,809 + MIT1002_01736 0.34 -0.6
1,928,844 - MIT1002_01736 0.38 -3.4
1,928,858 + MIT1002_01736 0.40 -2.1
1,928,859 + MIT1002_01736 0.40 -1.9
1,928,859 + MIT1002_01736 0.40 -2.2
1,928,859 + MIT1002_01736 0.40 -1.9
1,928,859 + MIT1002_01736 0.40 -2.8
1,928,859 + MIT1002_01736 0.40 -0.9
1,928,859 + MIT1002_01736 0.40 -0.6
1,928,859 + MIT1002_01736 0.40 +0.4
1,928,859 + MIT1002_01736 0.40 -1.0
1,928,859 + MIT1002_01736 0.40 -4.8
1,928,859 + MIT1002_01736 0.40 +0.2
1,928,859 + MIT1002_01736 0.40 -1.6
1,928,859 + MIT1002_01736 0.40 -0.8
1,928,859 + MIT1002_01736 0.40 -2.4
1,928,859 + MIT1002_01736 0.40 -3.6
1,928,859 + MIT1002_01736 0.40 -1.8
1,928,859 + MIT1002_01736 0.40 -2.4
1,928,859 + MIT1002_01736 0.40 -3.1
1,928,859 + MIT1002_01736 0.40 -2.1
1,928,859 + MIT1002_01736 0.40 -1.4
1,928,859 + MIT1002_01736 0.40 -1.4
1,928,859 + MIT1002_01736 0.40 -2.9
1,928,859 - MIT1002_01736 0.40 -2.3
1,928,867 - MIT1002_01736 0.41 +0.2
1,928,867 - MIT1002_01736 0.41 -2.8
1,928,867 - MIT1002_01736 0.41 -1.4
1,928,867 - MIT1002_01736 0.41 -3.0
1,928,867 - MIT1002_01736 0.41 +0.2
1,928,867 - MIT1002_01736 0.41 -3.5
1,928,867 - MIT1002_01736 0.41 -2.1
1,928,867 - MIT1002_01736 0.41 -2.1
1,928,867 - MIT1002_01736 0.41 -2.3
1,928,867 - MIT1002_01736 0.41 -0.7
1,928,903 + MIT1002_01736 0.45 -3.1
1,928,967 - MIT1002_01736 0.52 -1.8
1,928,967 - MIT1002_01736 0.52 -3.5
1,928,967 - MIT1002_01736 0.52 -3.1
1,928,969 + MIT1002_01736 0.53 -4.4
1,928,969 + MIT1002_01736 0.53 -5.2
1,928,977 - MIT1002_01736 0.54 -1.4
1,928,977 - MIT1002_01736 0.54 -3.7
1,928,977 - MIT1002_01736 0.54 -2.1
1,929,010 + MIT1002_01736 0.57 -2.4
1,929,018 - MIT1002_01736 0.58 -1.0
1,929,020 + MIT1002_01736 0.59 -2.2
1,929,045 - MIT1002_01736 0.62 -4.1
1,929,099 - MIT1002_01736 0.68 -3.0
1,929,247 + MIT1002_01736 0.85 -1.6
1,929,313 + -2.9
1,929,317 + -3.2
1,929,348 + +1.3
1,929,348 + -2.1
1,929,348 + -2.3
1,929,348 + -0.2
1,929,348 + +0.2
1,929,348 + -0.2
1,929,348 + -0.2
1,929,356 - +0.4
1,929,356 - -0.4
1,929,356 - -2.1
1,929,356 - +0.4
1,929,480 - -0.7
1,929,517 - -0.2
1,929,546 - +1.0
1,929,628 - MIT1002_01737 0.14 +1.0
1,929,640 - MIT1002_01737 0.15 +0.1
1,929,720 + MIT1002_01737 0.23 +1.2
1,929,745 + MIT1002_01737 0.25 +0.6
1,929,788 - MIT1002_01737 0.30 -1.0
1,929,807 + MIT1002_01737 0.31 +0.1
1,929,837 + MIT1002_01737 0.34 +1.0
1,929,837 + MIT1002_01737 0.34 -1.3
1,929,837 + MIT1002_01737 0.34 -1.8
1,929,837 + MIT1002_01737 0.34 +1.8
1,929,837 + MIT1002_01737 0.34 +2.2
1,929,837 + MIT1002_01737 0.34 -0.4
1,929,838 + MIT1002_01737 0.35 +0.7
1,929,838 + MIT1002_01737 0.35 +1.4
1,929,844 + MIT1002_01737 0.35 -0.0
1,929,844 + MIT1002_01737 0.35 +0.5
1,929,844 + MIT1002_01737 0.35 +2.2
1,929,844 + MIT1002_01737 0.35 +0.7
1,929,844 + MIT1002_01737 0.35 -0.1
1,929,845 - MIT1002_01737 0.35 +0.9
1,929,845 - MIT1002_01737 0.35 -1.0
1,929,845 - MIT1002_01737 0.35 -1.4
1,929,845 - MIT1002_01737 0.35 +1.4
1,929,845 - MIT1002_01737 0.35 +0.4
1,929,845 - MIT1002_01737 0.35 +0.7
1,929,845 - MIT1002_01737 0.35 -0.3
1,929,852 - MIT1002_01737 0.36 -2.4
1,929,852 - MIT1002_01737 0.36 -0.4
1,929,852 - MIT1002_01737 0.36 -0.5
1,929,864 - MIT1002_01737 0.37 -1.5
1,929,864 - MIT1002_01737 0.37 +1.0
1,929,864 - MIT1002_01737 0.37 +1.6
1,929,929 + MIT1002_01737 0.43 +0.9
1,929,929 + MIT1002_01737 0.43 -0.8
1,929,929 + MIT1002_01737 0.43 -1.9
1,929,937 - MIT1002_01737 0.44 -0.0
1,929,937 - MIT1002_01737 0.44 -0.9
1,929,937 - MIT1002_01737 0.44 -0.3
1,929,937 - MIT1002_01737 0.44 -0.8
1,929,937 - MIT1002_01737 0.44 +1.1
1,929,937 - MIT1002_01737 0.44 -0.4
1,930,044 - MIT1002_01737 0.55 +0.7
1,930,081 + MIT1002_01737 0.58 +2.1
1,930,100 + MIT1002_01737 0.60 +1.4
1,930,101 + MIT1002_01737 0.60 +0.4
1,930,121 - MIT1002_01737 0.62 +0.6
1,930,122 + MIT1002_01737 0.62 -0.0
1,930,130 - MIT1002_01737 0.63 +1.1
1,930,130 - MIT1002_01737 0.63 +0.1
1,930,130 - MIT1002_01737 0.63 +1.0
1,930,297 - MIT1002_01737 0.80 +0.2
1,930,308 - MIT1002_01737 0.81 -1.5
1,930,334 + MIT1002_01737 0.83 -0.4
1,930,342 - MIT1002_01737 0.84 +1.1
1,930,347 - MIT1002_01737 0.84 +0.1

Or see this region's nucleotide sequence