Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01473

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6
1,629,133	-		MIT1002_01471	0.87	-0.4
1,629,348	-		MIT1002_01472	0.14	+0.0
1,629,363	+		MIT1002_01472	0.17	-1.2
1,629,445	+		MIT1002_01472	0.36	-2.3
1,629,473	-		MIT1002_01472	0.42	-2.1
1,629,591	+		MIT1002_01472	0.68	-0.8
1,629,616	+		MIT1002_01472	0.74	-0.7
1,629,705	+				-1.8
1,629,744	-				-0.1
1,629,751	-				+0.4
1,629,846	+				+0.3
1,629,854	-				+0.0
1,629,854	-				-0.2
1,630,010	-				-0.8
1,630,193	+				+0.0
1,630,201	+				+0.7
1,630,209	-				+0.4
1,630,211	+				+0.5
1,630,219	-				+0.2
1,630,219	-				-0.7
1,630,219	-				+0.3
1,630,232	+				-1.2
1,630,313	-		MIT1002_01473	0.16	+1.0
1,630,354	+		MIT1002_01473	0.19	-3.3
1,630,363	-		MIT1002_01473	0.20	+0.3
1,630,375	+		MIT1002_01473	0.21	-2.0
1,630,394	-		MIT1002_01473	0.23	+0.4
1,630,517	+		MIT1002_01473	0.33	-0.6
1,630,522	+		MIT1002_01473	0.34	-0.3
1,630,522	+		MIT1002_01473	0.34	-1.1
1,630,522	+		MIT1002_01473	0.34	+2.9
1,630,522	+		MIT1002_01473	0.34	+1.6
1,630,540	-		MIT1002_01473	0.35	-2.9
1,630,627	+		MIT1002_01473	0.42	+1.4
1,630,635	-		MIT1002_01473	0.43	-1.5
1,630,635	-		MIT1002_01473	0.43	+0.4
1,630,635	-		MIT1002_01473	0.43	+0.0
1,630,671	-		MIT1002_01473	0.46	+1.5
1,630,726	+		MIT1002_01473	0.51	-1.0
1,630,791	-		MIT1002_01473	0.56	-2.4
1,630,795	+		MIT1002_01473	0.57	-1.4
1,630,796	-		MIT1002_01473	0.57	+0.2
1,630,803	-		MIT1002_01473	0.57	-1.6
1,630,864	-		MIT1002_01473	0.63	-0.5
1,630,896	-		MIT1002_01473	0.65	+0.0
1,630,939	+		MIT1002_01473	0.69	-0.5
1,630,968	-		MIT1002_01473	0.71	-0.6
1,630,968	-		MIT1002_01473	0.71	-2.9
1,630,999	+		MIT1002_01473	0.74	-2.2
1,631,037	+		MIT1002_01473	0.77	-2.0
1,631,037	+		MIT1002_01473	0.77	-1.1
1,631,045	-		MIT1002_01473	0.78	+0.1
1,631,059	+		MIT1002_01473	0.79	-0.0
1,631,082	-		MIT1002_01473	0.81	+0.4
1,631,136	+		MIT1002_01473	0.86	+1.9
1,631,167	+		MIT1002_01473	0.88	-0.6
1,631,175	-		MIT1002_01473	0.89	-1.7
1,631,329	-				+0.6
1,631,382	+				-0.5
1,631,391	-				+0.3
1,631,396	-				+0.0
1,631,396	-				-2.2
1,631,409	+				-1.2
1,631,417	-				-1.3
1,631,417	-				+0.7
1,631,429	+				-1.3
1,631,516	-				-2.6
1,631,535	+				-0.9
1,631,695	+		MIT1002_01474	0.16	+1.0
1,631,703	-		MIT1002_01474	0.16	-1.9
1,631,703	-		MIT1002_01474	0.16	+0.8
1,631,735	+		MIT1002_01474	0.18	-0.1
1,631,769	+		MIT1002_01474	0.20	-0.3
1,631,788	+		MIT1002_01474	0.20	+1.3
1,631,818	+		MIT1002_01474	0.22	+0.5
1,631,828	-		MIT1002_01474	0.22	-0.3
1,632,156	+		MIT1002_01474	0.38	-1.2
1,632,156	+		MIT1002_01474	0.38	+0.9
1,632,156	+		MIT1002_01474	0.38	+1.3
1,632,156	+		MIT1002_01474	0.38	+0.8
1,632,156	+		MIT1002_01474	0.38	+0.8
1,632,156	+		MIT1002_01474	0.38	+1.7
1,632,156	+		MIT1002_01474	0.38	-1.0
1,632,156	+		MIT1002_01474	0.38	-1.6
1,632,156	+		MIT1002_01474	0.38	-0.1
1,632,156	+		MIT1002_01474	0.38	-0.9
1,632,156	+		MIT1002_01474	0.38	+2.0
1,632,156	+		MIT1002_01474	0.38	-0.7
1,632,164	-		MIT1002_01474	0.38	-0.1
1,632,164	-		MIT1002_01474	0.38	+0.3
1,632,164	-		MIT1002_01474	0.38	+1.0
1,632,164	-		MIT1002_01474	0.38	-2.4
1,632,164	-		MIT1002_01474	0.38	+0.5
1,632,164	-		MIT1002_01474	0.38	+1.0
1,632,164	-		MIT1002_01474	0.38	-0.2
1,632,164	-		MIT1002_01474	0.38	-1.3
1,632,164	-		MIT1002_01474	0.38	-0.3
1,632,164	-		MIT1002_01474	0.38	+0.8
1,632,164	-		MIT1002_01474	0.38	+2.1
1,632,164	-		MIT1002_01474	0.38	+0.7
1,632,164	-		MIT1002_01474	0.38	+0.0
1,632,164	-		MIT1002_01474	0.38	-0.2
1,632,232	+		MIT1002_01474	0.41	-1.7