Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_01466 and MIT1002_01467 are separated by 13 nucleotides MIT1002_01467 and MIT1002_01468 are separated by 117 nucleotides MIT1002_01468 and MIT1002_01469 are separated by 213 nucleotides
MIT1002_01466: MIT1002_01466 - Carbamoyl-phosphate synthase small chain, at 1,620,990 to 1,622,255
_01466
MIT1002_01467: MIT1002_01467 - Carbamoyl-phosphate synthase large chain, at 1,622,269 to 1,625,490
_01467
MIT1002_01468: MIT1002_01468 - Transcript cleavage factor GreA, at 1,625,608 to 1,626,084
_01468
MIT1002_01469: MIT1002_01469 - hypothetical protein, at 1,626,298 to 1,628,148
_01469
Position (kb)
1622
1623
1624
1625
1626 Strain fitness (log2 ratio)
-8
-7
-6
-5
-4
-3
-2
-1
0
1
2
3 at 1621.272 kb on + strand, within MIT1002_01466 at 1621.280 kb on - strand, within MIT1002_01466 at 1621.359 kb on + strand, within MIT1002_01466 at 1621.493 kb on + strand, within MIT1002_01466 at 1621.579 kb on + strand, within MIT1002_01466 at 1621.612 kb on + strand, within MIT1002_01466 at 1621.638 kb on + strand, within MIT1002_01466 at 1621.661 kb on + strand, within MIT1002_01466 at 1621.669 kb on - strand, within MIT1002_01466 at 1621.672 kb on + strand, within MIT1002_01466 at 1621.766 kb on + strand, within MIT1002_01466 at 1621.773 kb on - strand, within MIT1002_01466 at 1621.805 kb on - strand, within MIT1002_01466 at 1621.846 kb on + strand, within MIT1002_01466 at 1621.854 kb on - strand, within MIT1002_01466 at 1621.854 kb on - strand, within MIT1002_01466 at 1621.905 kb on + strand, within MIT1002_01466 at 1621.916 kb on - strand, within MIT1002_01466 at 1622.021 kb on + strand, within MIT1002_01466 at 1622.025 kb on + strand, within MIT1002_01466 at 1622.174 kb on + strand at 1622.182 kb on - strand at 1622.315 kb on + strand at 1622.320 kb on + strand at 1622.419 kb on - strand at 1622.561 kb on - strand at 1622.567 kb on - strand at 1622.611 kb on - strand, within MIT1002_01467 at 1622.738 kb on + strand, within MIT1002_01467 at 1622.748 kb on - strand, within MIT1002_01467 at 1622.790 kb on + strand, within MIT1002_01467 at 1622.903 kb on + strand, within MIT1002_01467 at 1622.995 kb on + strand, within MIT1002_01467 at 1623.006 kb on + strand, within MIT1002_01467 at 1623.009 kb on + strand, within MIT1002_01467 at 1623.020 kb on + strand, within MIT1002_01467 at 1623.074 kb on + strand, within MIT1002_01467 at 1623.082 kb on - strand, within MIT1002_01467 at 1623.084 kb on - strand, within MIT1002_01467 at 1623.123 kb on + strand, within MIT1002_01467 at 1623.123 kb on + strand, within MIT1002_01467 at 1623.123 kb on + strand, within MIT1002_01467 at 1623.252 kb on + strand, within MIT1002_01467 at 1623.254 kb on + strand, within MIT1002_01467 at 1623.260 kb on - strand, within MIT1002_01467 at 1623.336 kb on + strand, within MIT1002_01467 at 1623.402 kb on - strand, within MIT1002_01467 at 1623.497 kb on + strand, within MIT1002_01467 at 1623.498 kb on - strand, within MIT1002_01467 at 1623.512 kb on - strand, within MIT1002_01467 at 1623.560 kb on + strand, within MIT1002_01467 at 1623.619 kb on - strand, within MIT1002_01467 at 1623.631 kb on - strand, within MIT1002_01467 at 1623.661 kb on - strand, within MIT1002_01467 at 1623.708 kb on - strand, within MIT1002_01467 at 1623.727 kb on + strand, within MIT1002_01467 at 1623.849 kb on - strand, within MIT1002_01467 at 1623.897 kb on - strand, within MIT1002_01467 at 1623.897 kb on - strand, within MIT1002_01467 at 1623.918 kb on + strand, within MIT1002_01467 at 1623.918 kb on + strand, within MIT1002_01467 at 1623.918 kb on + strand, within MIT1002_01467 at 1623.926 kb on - strand, within MIT1002_01467 at 1623.926 kb on - strand, within MIT1002_01467 at 1623.948 kb on + strand, within MIT1002_01467 at 1624.048 kb on - strand, within MIT1002_01467 at 1624.065 kb on + strand, within MIT1002_01467 at 1624.065 kb on + strand, within MIT1002_01467 at 1624.065 kb on + strand, within MIT1002_01467 at 1624.081 kb on + strand, within MIT1002_01467 at 1624.103 kb on - strand, within MIT1002_01467 at 1624.175 kb on - strand, within MIT1002_01467 at 1624.188 kb on + strand, within MIT1002_01467 at 1624.314 kb on - strand, within MIT1002_01467 at 1624.363 kb on - strand, within MIT1002_01467 at 1624.483 kb on - strand, within MIT1002_01467 at 1624.487 kb on + strand, within MIT1002_01467 at 1624.497 kb on + strand, within MIT1002_01467 at 1624.582 kb on - strand, within MIT1002_01467 at 1624.615 kb on - strand, within MIT1002_01467 at 1624.624 kb on - strand, within MIT1002_01467 at 1624.629 kb on + strand, within MIT1002_01467 at 1624.654 kb on - strand, within MIT1002_01467 at 1624.701 kb on + strand, within MIT1002_01467 at 1624.738 kb on - strand, within MIT1002_01467 at 1624.787 kb on + strand, within MIT1002_01467 at 1624.795 kb on - strand, within MIT1002_01467 at 1624.795 kb on - strand, within MIT1002_01467 at 1624.795 kb on - strand, within MIT1002_01467 at 1624.802 kb on - strand, within MIT1002_01467 at 1624.904 kb on - strand, within MIT1002_01467 at 1624.921 kb on + strand, within MIT1002_01467 at 1624.931 kb on - strand, within MIT1002_01467 at 1624.962 kb on + strand, within MIT1002_01467 at 1624.970 kb on + strand, within MIT1002_01467 at 1624.978 kb on - strand, within MIT1002_01467 at 1624.988 kb on + strand, within MIT1002_01467 at 1624.989 kb on - strand, within MIT1002_01467 at 1625.014 kb on + strand, within MIT1002_01467 at 1625.026 kb on + strand, within MIT1002_01467 at 1625.043 kb on + strand, within MIT1002_01467 at 1625.344 kb on + strand at 1625.344 kb on + strand at 1625.344 kb on + strand at 1625.344 kb on + strand at 1625.344 kb on + strand at 1625.352 kb on - strand at 1625.375 kb on + strand at 1625.383 kb on - strand at 1625.406 kb on + strand at 1625.467 kb on + strand at 1625.509 kb on + strand at 1625.510 kb on + strand at 1625.612 kb on - strand at 1625.724 kb on - strand, within MIT1002_01468 at 1625.748 kb on + strand, within MIT1002_01468 at 1625.800 kb on + strand, within MIT1002_01468 at 1625.878 kb on + strand, within MIT1002_01468 at 1626.092 kb on + strand at 1626.100 kb on - strand at 1626.108 kb on - strand at 1626.114 kb on + strand at 1626.208 kb on + strand at 1626.213 kb on + strand at 1626.213 kb on + strand at 1626.342 kb on + strand at 1626.352 kb on + strand at 1626.368 kb on - strand at 1626.374 kb on + strand at 1626.379 kb on + strand at 1626.444 kb on + strand at 1626.450 kb on + strand at 1626.451 kb on + strand at 1626.459 kb on - strand at 1626.486 kb on - strand, within MIT1002_01469
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6 remove 1,621,272 + MIT1002_01466 0.22 -1.5 1,621,280 - MIT1002_01466 0.23 -2.6 1,621,359 + MIT1002_01466 0.29 -1.7 1,621,493 + MIT1002_01466 0.40 -2.2 1,621,579 + MIT1002_01466 0.47 -4.7 1,621,612 + MIT1002_01466 0.49 -2.2 1,621,638 + MIT1002_01466 0.51 -1.2 1,621,661 + MIT1002_01466 0.53 -2.3 1,621,669 - MIT1002_01466 0.54 -1.3 1,621,672 + MIT1002_01466 0.54 -3.1 1,621,766 + MIT1002_01466 0.61 -2.3 1,621,773 - MIT1002_01466 0.62 -0.3 1,621,805 - MIT1002_01466 0.64 -1.5 1,621,846 + MIT1002_01466 0.68 -2.8 1,621,854 - MIT1002_01466 0.68 -1.7 1,621,854 - MIT1002_01466 0.68 -3.2 1,621,905 + MIT1002_01466 0.72 -3.1 1,621,916 - MIT1002_01466 0.73 -3.7 1,622,021 + MIT1002_01466 0.81 -2.2 1,622,025 + MIT1002_01466 0.82 -2.7 1,622,174 + -3.2 1,622,182 - -0.6 1,622,315 + -4.3 1,622,320 + -2.1 1,622,419 - -1.9 1,622,561 - -1.0 1,622,567 - -3.3 1,622,611 - MIT1002_01467 0.11 -5.2 1,622,738 + MIT1002_01467 0.15 -3.0 1,622,748 - MIT1002_01467 0.15 -1.1 1,622,790 + MIT1002_01467 0.16 -0.3 1,622,903 + MIT1002_01467 0.20 -5.1 1,622,995 + MIT1002_01467 0.23 -1.8 1,623,006 + MIT1002_01467 0.23 -2.1 1,623,009 + MIT1002_01467 0.23 -1.2 1,623,020 + MIT1002_01467 0.23 +0.8 1,623,074 + MIT1002_01467 0.25 -1.2 1,623,082 - MIT1002_01467 0.25 -1.9 1,623,084 - MIT1002_01467 0.25 -0.9 1,623,123 + MIT1002_01467 0.27 -2.8 1,623,123 + MIT1002_01467 0.27 -2.2 1,623,123 + MIT1002_01467 0.27 -2.2 1,623,252 + MIT1002_01467 0.31 -1.7 1,623,254 + MIT1002_01467 0.31 -2.2 1,623,260 - MIT1002_01467 0.31 -2.5 1,623,336 + MIT1002_01467 0.33 -1.6 1,623,402 - MIT1002_01467 0.35 -5.2 1,623,497 + MIT1002_01467 0.38 -3.7 1,623,498 - MIT1002_01467 0.38 -3.2 1,623,512 - MIT1002_01467 0.39 -2.7 1,623,560 + MIT1002_01467 0.40 -4.2 1,623,619 - MIT1002_01467 0.42 -2.9 1,623,631 - MIT1002_01467 0.42 -0.5 1,623,661 - MIT1002_01467 0.43 -3.6 1,623,708 - MIT1002_01467 0.45 -5.1 1,623,727 + MIT1002_01467 0.45 -2.5 1,623,849 - MIT1002_01467 0.49 -1.3 1,623,897 - MIT1002_01467 0.51 -8.1 1,623,897 - MIT1002_01467 0.51 -3.2 1,623,918 + MIT1002_01467 0.51 -1.2 1,623,918 + MIT1002_01467 0.51 -3.3 1,623,918 + MIT1002_01467 0.51 -4.6 1,623,926 - MIT1002_01467 0.51 -1.1 1,623,926 - MIT1002_01467 0.51 -2.4 1,623,948 + MIT1002_01467 0.52 -2.2 1,624,048 - MIT1002_01467 0.55 -2.5 1,624,065 + MIT1002_01467 0.56 -3.1 1,624,065 + MIT1002_01467 0.56 -3.0 1,624,065 + MIT1002_01467 0.56 -1.7 1,624,081 + MIT1002_01467 0.56 +0.3 1,624,103 - MIT1002_01467 0.57 -2.4 1,624,175 - MIT1002_01467 0.59 -1.3 1,624,188 + MIT1002_01467 0.60 +0.5 1,624,314 - MIT1002_01467 0.63 -2.1 1,624,363 - MIT1002_01467 0.65 -5.2 1,624,483 - MIT1002_01467 0.69 -2.1 1,624,487 + MIT1002_01467 0.69 +0.8 1,624,497 + MIT1002_01467 0.69 -1.5 1,624,582 - MIT1002_01467 0.72 -1.2 1,624,615 - MIT1002_01467 0.73 +0.3 1,624,624 - MIT1002_01467 0.73 -5.9 1,624,629 + MIT1002_01467 0.73 +0.3 1,624,654 - MIT1002_01467 0.74 -1.9 1,624,701 + MIT1002_01467 0.75 -2.2 1,624,738 - MIT1002_01467 0.77 -3.3 1,624,787 + MIT1002_01467 0.78 -2.1 1,624,795 - MIT1002_01467 0.78 -0.3 1,624,795 - MIT1002_01467 0.78 -0.6 1,624,795 - MIT1002_01467 0.78 +0.0 1,624,802 - MIT1002_01467 0.79 -2.5 1,624,904 - MIT1002_01467 0.82 -3.2 1,624,921 + MIT1002_01467 0.82 -1.9 1,624,931 - MIT1002_01467 0.83 -1.9 1,624,962 + MIT1002_01467 0.84 -2.5 1,624,970 + MIT1002_01467 0.84 -2.4 1,624,978 - MIT1002_01467 0.84 -1.2 1,624,988 + MIT1002_01467 0.84 -1.5 1,624,989 - MIT1002_01467 0.84 -2.1 1,625,014 + MIT1002_01467 0.85 -1.8 1,625,026 + MIT1002_01467 0.86 -2.1 1,625,043 + MIT1002_01467 0.86 +0.8 1,625,344 + -3.5 1,625,344 + -1.8 1,625,344 + -2.7 1,625,344 + -0.6 1,625,344 + -2.9 1,625,352 - -3.4 1,625,375 + -0.3 1,625,383 - -1.7 1,625,406 + -3.6 1,625,467 + +0.5 1,625,509 + +2.0 1,625,510 + -0.9 1,625,612 - +0.2 1,625,724 - MIT1002_01468 0.24 -1.1 1,625,748 + MIT1002_01468 0.29 +1.1 1,625,800 + MIT1002_01468 0.40 -0.6 1,625,878 + MIT1002_01468 0.57 -1.3 1,626,092 + -0.6 1,626,100 - -1.2 1,626,108 - -1.4 1,626,114 + -0.9 1,626,208 + +2.2 1,626,213 + -1.0 1,626,213 + -0.3 1,626,342 + +0.9 1,626,352 + -0.6 1,626,368 - +2.8 1,626,374 + +0.3 1,626,379 + +0.2 1,626,444 + -1.1 1,626,450 + -0.4 1,626,451 + -0.1 1,626,459 - -1.1 1,626,486 - MIT1002_01469 0.10 +0.4
Or see this region's nucleotide sequence