Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01427

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMIT1002_01426 and MIT1002_01427 are separated by 20 nucleotidesMIT1002_01427 and MIT1002_01428 overlap by 8 nucleotides MIT1002_01426: MIT1002_01426 - Tryptophan synthase beta chain, at 1,569,611 to 1,570,792 _01426 MIT1002_01427: MIT1002_01427 - Tryptophan biosynthesis protein TrpCF, at 1,570,813 to 1,572,222 _01427 MIT1002_01428: MIT1002_01428 - Anthranilate synthase component II, at 1,572,215 to 1,573,246 _01428 Position (kb) 1570 1571 1572 1573Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1570.802 kb on - strandat 1570.854 kb on - strandat 1571.097 kb on - strand, within MIT1002_01427at 1571.462 kb on - strand, within MIT1002_01427at 1571.481 kb on + strand, within MIT1002_01427at 1571.768 kb on + strand, within MIT1002_01427at 1571.823 kb on - strand, within MIT1002_01427at 1571.831 kb on + strand, within MIT1002_01427at 1572.280 kb on - strandat 1572.331 kb on - strand, within MIT1002_01428at 1572.355 kb on - strand, within MIT1002_01428at 1572.526 kb on + strand, within MIT1002_01428at 1572.541 kb on - strand, within MIT1002_01428at 1572.595 kb on - strand, within MIT1002_01428at 1572.616 kb on + strand, within MIT1002_01428at 1572.624 kb on - strand, within MIT1002_01428at 1572.636 kb on + strand, within MIT1002_01428at 1572.654 kb on - strand, within MIT1002_01428at 1572.671 kb on + strand, within MIT1002_01428at 1572.676 kb on + strand, within MIT1002_01428at 1572.813 kb on + strand, within MIT1002_01428at 1573.133 kb on - strand, within MIT1002_01428at 1573.164 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6
remove
1,570,802 - -3.2
1,570,854 - -1.3
1,571,097 - MIT1002_01427 0.20 -2.7
1,571,462 - MIT1002_01427 0.46 -1.1
1,571,481 + MIT1002_01427 0.47 -1.8
1,571,768 + MIT1002_01427 0.68 -0.3
1,571,823 - MIT1002_01427 0.72 -0.1
1,571,831 + MIT1002_01427 0.72 -1.3
1,572,280 - -1.5
1,572,331 - MIT1002_01428 0.11 -1.7
1,572,355 - MIT1002_01428 0.14 -4.5
1,572,526 + MIT1002_01428 0.30 -4.1
1,572,541 - MIT1002_01428 0.32 -1.3
1,572,595 - MIT1002_01428 0.37 -1.2
1,572,616 + MIT1002_01428 0.39 -3.3
1,572,624 - MIT1002_01428 0.40 -1.5
1,572,636 + MIT1002_01428 0.41 -1.4
1,572,654 - MIT1002_01428 0.43 -0.6
1,572,671 + MIT1002_01428 0.44 +0.1
1,572,676 + MIT1002_01428 0.45 -2.3
1,572,813 + MIT1002_01428 0.58 -4.2
1,573,133 - MIT1002_01428 0.89 -2.0
1,573,164 - -1.1

Or see this region's nucleotide sequence