Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01427
Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6 |
---|---|---|---|---|---|
remove | |||||
1,570,802 | - | -3.2 | |||
1,570,854 | - | -1.3 | |||
1,571,097 | - | MIT1002_01427 | 0.20 | -2.7 | |
1,571,462 | - | MIT1002_01427 | 0.46 | -1.1 | |
1,571,481 | + | MIT1002_01427 | 0.47 | -1.8 | |
1,571,768 | + | MIT1002_01427 | 0.68 | -0.3 | |
1,571,823 | - | MIT1002_01427 | 0.72 | -0.1 | |
1,571,831 | + | MIT1002_01427 | 0.72 | -1.3 | |
1,572,280 | - | -1.5 | |||
1,572,331 | - | MIT1002_01428 | 0.11 | -1.7 | |
1,572,355 | - | MIT1002_01428 | 0.14 | -4.5 | |
1,572,526 | + | MIT1002_01428 | 0.30 | -4.1 | |
1,572,541 | - | MIT1002_01428 | 0.32 | -1.3 | |
1,572,595 | - | MIT1002_01428 | 0.37 | -1.2 | |
1,572,616 | + | MIT1002_01428 | 0.39 | -3.3 | |
1,572,624 | - | MIT1002_01428 | 0.40 | -1.5 | |
1,572,636 | + | MIT1002_01428 | 0.41 | -1.4 | |
1,572,654 | - | MIT1002_01428 | 0.43 | -0.6 | |
1,572,671 | + | MIT1002_01428 | 0.44 | +0.1 | |
1,572,676 | + | MIT1002_01428 | 0.45 | -2.3 | |
1,572,813 | + | MIT1002_01428 | 0.58 | -4.2 | |
1,573,133 | - | MIT1002_01428 | 0.89 | -2.0 | |
1,573,164 | - | -1.1 |
Or see this region's nucleotide sequence