Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01334

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMIT1002_01333 and MIT1002_01334 are separated by 586 nucleotidesMIT1002_01334 and MIT1002_01335 overlap by 11 nucleotidesMIT1002_01335 and MIT1002_01336 are separated by 29 nucleotides MIT1002_01333: MIT1002_01333 - Holliday junction ATP-dependent DNA helicase RuvB, at 1,479,174 to 1,480,178 _01333 MIT1002_01334: MIT1002_01334 - Acyl-CoA thioester hydrolase YbgC, at 1,480,765 to 1,481,163 _01334 MIT1002_01335: MIT1002_01335 - Biopolymer transport protein ExbB, at 1,481,153 to 1,481,842 _01335 MIT1002_01336: MIT1002_01336 - Biopolymer transport protein ExbD, at 1,481,872 to 1,482,291 _01336 Position (kb) 1480 1481 1482Strain fitness (log2 ratio) -1 0 1at 1480.228 kb on - strandat 1480.315 kb on + strandat 1480.343 kb on + strandat 1480.520 kb on + strandat 1480.538 kb on - strandat 1480.538 kb on - strandat 1480.548 kb on + strandat 1480.679 kb on - strandat 1480.702 kb on - strandat 1480.856 kb on + strand, within MIT1002_01334at 1480.862 kb on - strand, within MIT1002_01334at 1480.883 kb on + strand, within MIT1002_01334at 1480.891 kb on - strand, within MIT1002_01334at 1481.059 kb on + strand, within MIT1002_01334at 1481.095 kb on + strand, within MIT1002_01334at 1481.837 kb on + strandat 1481.837 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6
remove
1,480,228 - +1.0
1,480,315 + +0.6
1,480,343 + -1.3
1,480,520 + -0.7
1,480,538 - +1.3
1,480,538 - -0.2
1,480,548 + -0.1
1,480,679 - -1.4
1,480,702 - -0.0
1,480,856 + MIT1002_01334 0.23 +0.8
1,480,862 - MIT1002_01334 0.24 +0.4
1,480,883 + MIT1002_01334 0.30 -0.2
1,480,891 - MIT1002_01334 0.32 +1.1
1,481,059 + MIT1002_01334 0.74 +1.1
1,481,095 + MIT1002_01334 0.83 +1.0
1,481,837 + -0.3
1,481,837 + -0.0

Or see this region's nucleotide sequence