Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_01262 and MIT1002_01263 are separated by 96 nucleotides MIT1002_01263 and MIT1002_01264 are separated by 95 nucleotides MIT1002_01264 and MIT1002_01265 are separated by 76 nucleotides
MIT1002_01262: MIT1002_01262 - DNA-binding transcriptional activator XapR, at 1,390,063 to 1,390,989
_01262
MIT1002_01263: MIT1002_01263 - 7-cyano-7-deazaguanine synthase, at 1,391,086 to 1,391,742
_01263
MIT1002_01264: MIT1002_01264 - 7-carboxy-7-deazaguanine synthase, at 1,391,838 to 1,392,512
_01264
MIT1002_01265: MIT1002_01265 - hypothetical protein, at 1,392,589 to 1,393,485
_01265
Position (kb)
1391
1392
1393 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3 at 1390.847 kb on + strand, within MIT1002_01262 at 1390.929 kb on - strand at 1390.933 kb on + strand at 1390.940 kb on - strand at 1390.962 kb on - strand at 1391.056 kb on - strand at 1391.397 kb on + strand, within MIT1002_01263 at 1391.397 kb on + strand, within MIT1002_01263 at 1391.397 kb on + strand, within MIT1002_01263 at 1391.466 kb on + strand, within MIT1002_01263 at 1391.486 kb on - strand, within MIT1002_01263 at 1391.523 kb on - strand, within MIT1002_01263 at 1391.528 kb on - strand, within MIT1002_01263 at 1391.652 kb on - strand, within MIT1002_01263 at 1391.691 kb on - strand at 1391.691 kb on - strand at 1391.699 kb on - strand at 1391.701 kb on + strand at 1391.709 kb on - strand at 1391.719 kb on + strand at 1391.812 kb on - strand at 1391.864 kb on + strand at 1391.864 kb on + strand at 1391.879 kb on + strand at 1391.879 kb on + strand at 1391.887 kb on - strand at 1391.887 kb on - strand at 1391.904 kb on - strand at 1391.918 kb on - strand, within MIT1002_01264 at 1391.927 kb on + strand, within MIT1002_01264 at 1391.934 kb on + strand, within MIT1002_01264 at 1391.935 kb on - strand, within MIT1002_01264 at 1391.942 kb on - strand, within MIT1002_01264 at 1391.953 kb on - strand, within MIT1002_01264 at 1391.959 kb on - strand, within MIT1002_01264 at 1392.108 kb on - strand, within MIT1002_01264 at 1392.147 kb on + strand, within MIT1002_01264 at 1392.234 kb on - strand, within MIT1002_01264 at 1392.271 kb on + strand, within MIT1002_01264 at 1392.320 kb on + strand, within MIT1002_01264 at 1392.370 kb on - strand, within MIT1002_01264 at 1392.430 kb on + strand, within MIT1002_01264 at 1392.596 kb on + strand at 1392.596 kb on + strand at 1392.596 kb on + strand at 1392.604 kb on - strand at 1392.604 kb on - strand at 1392.671 kb on - strand at 1392.686 kb on + strand, within MIT1002_01265 at 1392.705 kb on - strand, within MIT1002_01265 at 1392.744 kb on + strand, within MIT1002_01265 at 1392.849 kb on + strand, within MIT1002_01265 at 1392.849 kb on + strand, within MIT1002_01265 at 1392.864 kb on + strand, within MIT1002_01265 at 1392.867 kb on - strand, within MIT1002_01265 at 1392.872 kb on + strand, within MIT1002_01265 at 1392.872 kb on - strand, within MIT1002_01265 at 1393.010 kb on + strand, within MIT1002_01265 at 1393.067 kb on + strand, within MIT1002_01265 at 1393.075 kb on - strand, within MIT1002_01265 at 1393.075 kb on - strand, within MIT1002_01265 at 1393.092 kb on - strand, within MIT1002_01265 at 1393.102 kb on + strand, within MIT1002_01265 at 1393.130 kb on - strand, within MIT1002_01265 at 1393.158 kb on + strand, within MIT1002_01265 at 1393.168 kb on + strand, within MIT1002_01265 at 1393.176 kb on - strand, within MIT1002_01265 at 1393.224 kb on + strand, within MIT1002_01265 at 1393.232 kb on - strand, within MIT1002_01265 at 1393.232 kb on - strand, within MIT1002_01265 at 1393.232 kb on - strand, within MIT1002_01265 at 1393.232 kb on - strand, within MIT1002_01265 at 1393.232 kb on - strand, within MIT1002_01265 at 1393.232 kb on - strand, within MIT1002_01265 at 1393.238 kb on - strand, within MIT1002_01265 at 1393.264 kb on + strand, within MIT1002_01265 at 1393.294 kb on + strand, within MIT1002_01265 at 1393.302 kb on - strand, within MIT1002_01265 at 1393.302 kb on - strand, within MIT1002_01265 at 1393.359 kb on - strand, within MIT1002_01265 at 1393.373 kb on + strand, within MIT1002_01265 at 1393.381 kb on - strand, within MIT1002_01265
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6 remove 1,390,847 + MIT1002_01262 0.85 -1.0 1,390,929 - -1.3 1,390,933 + +0.4 1,390,940 - +2.9 1,390,962 - -0.2 1,391,056 - +1.4 1,391,397 + MIT1002_01263 0.47 -2.2 1,391,397 + MIT1002_01263 0.47 -3.8 1,391,397 + MIT1002_01263 0.47 -5.4 1,391,466 + MIT1002_01263 0.58 -5.0 1,391,486 - MIT1002_01263 0.61 +0.4 1,391,523 - MIT1002_01263 0.67 -0.0 1,391,528 - MIT1002_01263 0.67 -3.4 1,391,652 - MIT1002_01263 0.86 -0.3 1,391,691 - -3.0 1,391,691 - -2.7 1,391,699 - -2.0 1,391,701 + -1.2 1,391,709 - -2.0 1,391,719 + -1.0 1,391,812 - +1.0 1,391,864 + -2.0 1,391,864 + -1.4 1,391,879 + -0.8 1,391,879 + -2.1 1,391,887 - -2.4 1,391,887 - -0.3 1,391,904 - -3.1 1,391,918 - MIT1002_01264 0.12 -1.5 1,391,927 + MIT1002_01264 0.13 -4.2 1,391,934 + MIT1002_01264 0.14 -0.9 1,391,935 - MIT1002_01264 0.14 -3.2 1,391,942 - MIT1002_01264 0.15 -1.9 1,391,953 - MIT1002_01264 0.17 -2.0 1,391,959 - MIT1002_01264 0.18 -0.3 1,392,108 - MIT1002_01264 0.40 -1.8 1,392,147 + MIT1002_01264 0.46 -1.9 1,392,234 - MIT1002_01264 0.59 -1.4 1,392,271 + MIT1002_01264 0.64 -3.4 1,392,320 + MIT1002_01264 0.71 -1.3 1,392,370 - MIT1002_01264 0.79 -2.2 1,392,430 + MIT1002_01264 0.88 -2.6 1,392,596 + -1.2 1,392,596 + +0.3 1,392,596 + +2.0 1,392,604 - -0.5 1,392,604 - +0.4 1,392,671 - -1.5 1,392,686 + MIT1002_01265 0.11 +0.8 1,392,705 - MIT1002_01265 0.13 -1.5 1,392,744 + MIT1002_01265 0.17 -0.8 1,392,849 + MIT1002_01265 0.29 +1.3 1,392,849 + MIT1002_01265 0.29 +1.1 1,392,864 + MIT1002_01265 0.31 -0.6 1,392,867 - MIT1002_01265 0.31 +1.7 1,392,872 + MIT1002_01265 0.32 +0.7 1,392,872 - MIT1002_01265 0.32 +0.8 1,393,010 + MIT1002_01265 0.47 +0.9 1,393,067 + MIT1002_01265 0.53 +1.0 1,393,075 - MIT1002_01265 0.54 +2.3 1,393,075 - MIT1002_01265 0.54 +0.0 1,393,092 - MIT1002_01265 0.56 +0.3 1,393,102 + MIT1002_01265 0.57 +0.9 1,393,130 - MIT1002_01265 0.60 +1.1 1,393,158 + MIT1002_01265 0.63 -0.9 1,393,168 + MIT1002_01265 0.65 -0.5 1,393,176 - MIT1002_01265 0.65 +1.0 1,393,224 + MIT1002_01265 0.71 +0.7 1,393,232 - MIT1002_01265 0.72 +0.1 1,393,232 - MIT1002_01265 0.72 +1.0 1,393,232 - MIT1002_01265 0.72 +1.0 1,393,232 - MIT1002_01265 0.72 -2.1 1,393,232 - MIT1002_01265 0.72 -0.3 1,393,232 - MIT1002_01265 0.72 +0.3 1,393,238 - MIT1002_01265 0.72 +2.1 1,393,264 + MIT1002_01265 0.75 +0.9 1,393,294 + MIT1002_01265 0.79 -1.6 1,393,302 - MIT1002_01265 0.79 +0.4 1,393,302 - MIT1002_01265 0.79 +0.1 1,393,359 - MIT1002_01265 0.86 +0.3 1,393,373 + MIT1002_01265 0.87 -0.2 1,393,381 - MIT1002_01265 0.88 +0.5
Or see this region's nucleotide sequence