Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01197

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6
1,312,373	+				-2.1
1,312,373	-				-1.5
1,312,382	+				-1.0
1,312,402	+				+0.3
1,312,402	+				-0.4
1,312,410	-				+1.2
1,312,410	-				-1.8
1,312,410	-				+0.9
1,312,410	-				-1.2
1,312,412	-				-0.0
1,312,442	-				+0.6
1,312,565	-				-1.0
1,312,670	-		MIT1002_01196	0.12	-1.3
1,312,677	+		MIT1002_01196	0.13	-1.7
1,312,743	-		MIT1002_01196	0.23	-0.1
1,312,764	-		MIT1002_01196	0.26	-2.4
1,312,788	-		MIT1002_01196	0.30	-3.0
1,312,795	-		MIT1002_01196	0.31	+0.2
1,312,802	-		MIT1002_01196	0.32	-0.4
1,312,862	+		MIT1002_01196	0.41	-1.0
1,312,901	-		MIT1002_01196	0.47	+1.2
1,312,922	+		MIT1002_01196	0.50	-0.4
1,312,930	-		MIT1002_01196	0.51	-0.9
1,312,932	+		MIT1002_01196	0.52	-0.2
1,312,932	+		MIT1002_01196	0.52	-0.6
1,312,940	-		MIT1002_01196	0.53	+0.5
1,313,005	-		MIT1002_01196	0.62	+0.1
1,313,022	+		MIT1002_01196	0.65	-1.9
1,313,030	-		MIT1002_01196	0.66	-3.0
1,313,051	-		MIT1002_01196	0.69	+0.8
1,313,057	+		MIT1002_01196	0.70	-0.4
1,313,057	+		MIT1002_01196	0.70	-1.2
1,313,057	+		MIT1002_01196	0.70	-0.2
1,313,057	+		MIT1002_01196	0.70	-0.7
1,313,060	-		MIT1002_01196	0.71	+0.5
1,313,065	-		MIT1002_01196	0.71	-1.0
1,313,065	-		MIT1002_01196	0.71	+0.2
1,313,082	+		MIT1002_01196	0.74	+2.8
1,313,082	+		MIT1002_01196	0.74	-0.4
1,313,082	+		MIT1002_01196	0.74	-0.7
1,313,082	+		MIT1002_01196	0.74	+0.0
1,313,090	-		MIT1002_01196	0.75	+0.6
1,313,090	-		MIT1002_01196	0.75	+1.0
1,313,095	-		MIT1002_01196	0.76	-3.4
1,313,095	-		MIT1002_01196	0.76	-3.0
1,313,097	+		MIT1002_01196	0.76	+0.3
1,313,105	-		MIT1002_01196	0.77	-2.6
1,313,105	-		MIT1002_01196	0.77	-0.3
1,313,105	-		MIT1002_01196	0.77	+0.6
1,313,120	-		MIT1002_01196	0.80	-1.2
1,313,194	+				+1.3
1,313,199	+				+2.4
1,313,202	-				-2.2
1,313,228	+				-2.8
1,313,253	+				+1.0
1,313,263	+				-2.1
1,313,263	+				-1.4
1,313,271	-				-0.4
1,313,271	-				-0.5
1,313,271	-				-1.5
1,313,334	-				-0.2
1,313,383	-				+1.9
1,313,405	-				-0.6
1,313,405	-				-0.9
1,313,431	-				+1.6
1,313,434	-				+0.9
1,313,444	+				-0.8
1,313,444	+				-1.1
1,313,444	+				+0.3
1,313,450	-				-0.0
1,313,450	-				+1.8
1,313,452	-				+0.7
1,313,452	-				+0.1
1,313,452	-				-1.1
1,313,452	-				-0.4
1,313,456	+				-2.3
1,313,456	+				-1.9
1,313,492	+				-0.5
1,313,500	-				-0.0
1,313,501	-				-2.1
1,313,566	-		MIT1002_01197	0.13	+1.1
1,313,578	-		MIT1002_01197	0.14	+1.5
1,313,641	-		MIT1002_01197	0.17	+0.3
1,313,693	+		MIT1002_01197	0.20	+1.2
1,313,748	-		MIT1002_01197	0.23	-1.8
1,313,796	+		MIT1002_01197	0.26	-0.6
1,313,796	+		MIT1002_01197	0.26	+0.6
1,313,823	-		MIT1002_01197	0.27	+1.0
1,313,881	-		MIT1002_01197	0.30	-0.3
1,313,925	-		MIT1002_01197	0.33	-2.7
1,313,936	-		MIT1002_01197	0.33	-1.6
1,313,972	-		MIT1002_01197	0.35	-2.2
1,313,980	-		MIT1002_01197	0.36	-0.8
1,313,980	-		MIT1002_01197	0.36	-0.6
1,314,162	+		MIT1002_01197	0.45	-2.6
1,314,187	-		MIT1002_01197	0.47	+2.3
1,314,217	+		MIT1002_01197	0.48	+0.5
1,314,225	+		MIT1002_01197	0.49	-0.2
1,314,225	+		MIT1002_01197	0.49	-0.6
1,314,225	+		MIT1002_01197	0.49	-0.3
1,314,233	-		MIT1002_01197	0.49	-1.3
1,314,233	-		MIT1002_01197	0.49	-1.3
1,314,281	+		MIT1002_01197	0.52	+0.4
1,314,289	-		MIT1002_01197	0.52	+1.0
1,314,289	-		MIT1002_01197	0.52	-1.9
1,314,347	+		MIT1002_01197	0.55	-0.4
1,314,347	+		MIT1002_01197	0.55	+1.7
1,314,347	+		MIT1002_01197	0.55	-0.2
1,314,368	-		MIT1002_01197	0.57	-2.8
1,314,373	+		MIT1002_01197	0.57	-0.4
1,314,378	+		MIT1002_01197	0.57	+0.8
1,314,386	-		MIT1002_01197	0.58	+0.6
1,314,442	-		MIT1002_01197	0.61	-3.2
1,314,457	+		MIT1002_01197	0.61	-0.3
1,314,470	+		MIT1002_01197	0.62	+1.4
1,314,592	-		MIT1002_01197	0.69	-0.6
1,314,628	+		MIT1002_01197	0.71	+0.2
1,314,640	-		MIT1002_01197	0.71	-3.0
1,314,642	+		MIT1002_01197	0.71	-1.0
1,314,650	-		MIT1002_01197	0.72	-0.2
1,314,705	-		MIT1002_01197	0.75	+1.6
1,314,777	-		MIT1002_01197	0.79	-2.4
1,314,789	-		MIT1002_01197	0.79	-0.9
1,314,789	-		MIT1002_01197	0.79	-1.3
1,314,880	+		MIT1002_01197	0.84	-1.7
1,314,885	-		MIT1002_01197	0.84	-0.9
1,314,890	+		MIT1002_01197	0.85	-2.2
1,314,895	+		MIT1002_01197	0.85	-0.6
1,314,908	+		MIT1002_01197	0.86	-1.1
1,315,031	+				-1.7
1,315,151	-				-0.7
1,315,193	-				+0.2
1,315,210	+				-0.0
1,315,218	-				-1.1
1,315,402	-				+1.4
1,315,407	-				-0.6
1,315,441	+				-0.0
1,315,449	-				-1.9
1,315,643	+		MIT1002_01198	0.36	+1.0
1,315,769	-		MIT1002_01198	0.56	-0.3
1,315,776	+		MIT1002_01198	0.57	+0.8
1,315,787	+		MIT1002_01198	0.58	+0.3
1,315,838	+		MIT1002_01198	0.67	-0.0
1,315,846	-		MIT1002_01198	0.68	-1.0
1,315,851	-		MIT1002_01198	0.69	-2.6
1,315,853	-		MIT1002_01198	0.69	-2.1
1,315,868	-		MIT1002_01198	0.71	-0.5
1,315,935	-		MIT1002_01198	0.82	+1.0
1,315,961	+		MIT1002_01198	0.86	+0.4
1,315,961	+		MIT1002_01198	0.86	-2.1
1,315,969	-		MIT1002_01198	0.87	+2.2
1,315,969	-		MIT1002_01198	0.87	+0.3
1,315,986	+		MIT1002_01198	0.90	+1.5