Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01031

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_01029 and MIT1002_01030 are separated by 161 nucleotidesMIT1002_01030 and MIT1002_01031 are separated by 132 nucleotidesMIT1002_01031 and MIT1002_01032 are separated by 485 nucleotides MIT1002_01029: MIT1002_01029 - putative DNA endonuclease SmrA, at 1,142,423 to 1,143,010 _01029 MIT1002_01030: MIT1002_01030 - hypothetical protein, at 1,143,172 to 1,143,297 _01030 MIT1002_01031: MIT1002_01031 - tRNA-Arg, at 1,143,430 to 1,143,504 _01031 MIT1002_01032: MIT1002_01032 - hypothetical protein, at 1,143,990 to 1,145,171 _01032 Position (kb) 1143 1144Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1142.603 kb on + strand, within MIT1002_01029at 1142.622 kb on + strand, within MIT1002_01029at 1142.692 kb on + strand, within MIT1002_01029at 1142.692 kb on + strand, within MIT1002_01029at 1142.700 kb on - strand, within MIT1002_01029at 1142.700 kb on - strand, within MIT1002_01029at 1142.700 kb on - strand, within MIT1002_01029at 1142.731 kb on - strand, within MIT1002_01029at 1142.743 kb on - strand, within MIT1002_01029at 1142.768 kb on + strand, within MIT1002_01029at 1142.785 kb on + strand, within MIT1002_01029at 1142.818 kb on + strand, within MIT1002_01029at 1142.818 kb on + strand, within MIT1002_01029at 1142.818 kb on + strand, within MIT1002_01029at 1142.826 kb on + strand, within MIT1002_01029at 1142.826 kb on - strand, within MIT1002_01029at 1142.826 kb on - strand, within MIT1002_01029at 1142.826 kb on - strand, within MIT1002_01029at 1142.908 kb on + strand, within MIT1002_01029at 1143.009 kb on + strandat 1143.046 kb on - strandat 1143.066 kb on + strandat 1143.074 kb on - strandat 1143.074 kb on - strandat 1143.074 kb on - strandat 1143.076 kb on + strandat 1143.082 kb on - strandat 1143.082 kb on - strandat 1143.097 kb on - strandat 1143.097 kb on - strandat 1143.201 kb on + strand, within MIT1002_01030at 1143.207 kb on - strand, within MIT1002_01030at 1143.209 kb on - strand, within MIT1002_01030at 1143.327 kb on - strandat 1143.465 kb on - strand, within MIT1002_01031at 1143.466 kb on - strand, within MIT1002_01031at 1143.466 kb on - strand, within MIT1002_01031at 1143.471 kb on - strand, within MIT1002_01031at 1143.475 kb on + strand, within MIT1002_01031at 1143.483 kb on - strand, within MIT1002_01031at 1143.502 kb on + strandat 1143.575 kb on - strandat 1143.625 kb on - strandat 1143.735 kb on + strandat 1143.942 kb on - strandat 1144.062 kb on - strandat 1144.105 kb on + strandat 1144.282 kb on - strand, within MIT1002_01032at 1144.407 kb on - strand, within MIT1002_01032at 1144.430 kb on - strand, within MIT1002_01032

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6
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1,142,603 + MIT1002_01029 0.31 +0.2
1,142,622 + MIT1002_01029 0.34 -1.5
1,142,692 + MIT1002_01029 0.46 -1.1
1,142,692 + MIT1002_01029 0.46 -1.2
1,142,700 - MIT1002_01029 0.47 -0.9
1,142,700 - MIT1002_01029 0.47 -0.5
1,142,700 - MIT1002_01029 0.47 +0.2
1,142,731 - MIT1002_01029 0.52 +0.0
1,142,743 - MIT1002_01029 0.54 -2.5
1,142,768 + MIT1002_01029 0.59 +1.2
1,142,785 + MIT1002_01029 0.62 +0.7
1,142,818 + MIT1002_01029 0.67 +0.2
1,142,818 + MIT1002_01029 0.67 -1.3
1,142,818 + MIT1002_01029 0.67 +0.7
1,142,826 + MIT1002_01029 0.69 -0.3
1,142,826 - MIT1002_01029 0.69 -0.5
1,142,826 - MIT1002_01029 0.69 +1.2
1,142,826 - MIT1002_01029 0.69 -1.7
1,142,908 + MIT1002_01029 0.82 +0.7
1,143,009 + -2.0
1,143,046 - +0.2
1,143,066 + +0.0
1,143,074 - -1.5
1,143,074 - +1.3
1,143,074 - -0.2
1,143,076 + -0.5
1,143,082 - +2.5
1,143,082 - +0.2
1,143,097 - +0.0
1,143,097 - -0.3
1,143,201 + MIT1002_01030 0.23 -2.2
1,143,207 - MIT1002_01030 0.28 -1.7
1,143,209 - MIT1002_01030 0.29 -0.2
1,143,327 - +0.0
1,143,465 - MIT1002_01031 0.47 +1.0
1,143,466 - MIT1002_01031 0.48 +1.8
1,143,466 - MIT1002_01031 0.48 +1.0
1,143,471 - MIT1002_01031 0.55 +1.0
1,143,475 + MIT1002_01031 0.60 +1.7
1,143,483 - MIT1002_01031 0.71 +1.6
1,143,502 + +1.6
1,143,575 - -0.8
1,143,625 - -0.1
1,143,735 + -2.7
1,143,942 - -1.2
1,144,062 - +0.5
1,144,105 + +0.9
1,144,282 - MIT1002_01032 0.25 +2.0
1,144,407 - MIT1002_01032 0.35 -1.3
1,144,430 - MIT1002_01032 0.37 +2.9

Or see this region's nucleotide sequence