Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00970

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00969 and MIT1002_00970 are separated by 179 nucleotidesMIT1002_00970 and MIT1002_00971 overlap by 4 nucleotidesMIT1002_00971 and MIT1002_00972 are separated by 100 nucleotides MIT1002_00969: MIT1002_00969 - putative phospholipid-binding lipoprotein MlaA precursor, at 1,075,303 to 1,076,247 _00969 MIT1002_00970: MIT1002_00970 - UDP-glucose 4-epimerase, at 1,076,427 to 1,077,449 _00970 MIT1002_00971: MIT1002_00971 - hypothetical protein, at 1,077,446 to 1,077,748 _00971 MIT1002_00972: MIT1002_00972 - Di-/tripeptide transporter, at 1,077,849 to 1,079,369 _00972 Position (kb) 1076 1077 1078Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1075.447 kb on - strand, within MIT1002_00969at 1075.448 kb on + strand, within MIT1002_00969at 1075.448 kb on + strand, within MIT1002_00969at 1075.456 kb on - strand, within MIT1002_00969at 1075.456 kb on - strand, within MIT1002_00969at 1075.456 kb on - strand, within MIT1002_00969at 1075.456 kb on - strand, within MIT1002_00969at 1075.456 kb on - strand, within MIT1002_00969at 1075.511 kb on + strand, within MIT1002_00969at 1075.518 kb on - strand, within MIT1002_00969at 1075.524 kb on + strand, within MIT1002_00969at 1075.554 kb on + strand, within MIT1002_00969at 1075.562 kb on - strand, within MIT1002_00969at 1075.573 kb on + strand, within MIT1002_00969at 1075.595 kb on + strand, within MIT1002_00969at 1075.595 kb on + strand, within MIT1002_00969at 1075.595 kb on + strand, within MIT1002_00969at 1075.603 kb on - strand, within MIT1002_00969at 1075.603 kb on - strand, within MIT1002_00969at 1075.683 kb on + strand, within MIT1002_00969at 1075.745 kb on - strand, within MIT1002_00969at 1075.752 kb on + strand, within MIT1002_00969at 1075.889 kb on + strand, within MIT1002_00969at 1075.969 kb on - strand, within MIT1002_00969at 1076.432 kb on + strandat 1076.432 kb on + strandat 1076.440 kb on - strandat 1076.487 kb on - strandat 1076.545 kb on + strand, within MIT1002_00970at 1076.553 kb on - strand, within MIT1002_00970at 1076.553 kb on - strand, within MIT1002_00970at 1076.587 kb on - strand, within MIT1002_00970at 1076.587 kb on - strand, within MIT1002_00970at 1076.592 kb on + strand, within MIT1002_00970at 1076.592 kb on - strand, within MIT1002_00970at 1076.644 kb on + strand, within MIT1002_00970at 1076.649 kb on + strand, within MIT1002_00970at 1076.649 kb on + strand, within MIT1002_00970at 1076.649 kb on + strand, within MIT1002_00970at 1076.652 kb on - strand, within MIT1002_00970at 1076.652 kb on - strand, within MIT1002_00970at 1076.656 kb on + strand, within MIT1002_00970at 1076.657 kb on - strand, within MIT1002_00970at 1076.657 kb on - strand, within MIT1002_00970at 1076.657 kb on - strand, within MIT1002_00970at 1076.657 kb on - strand, within MIT1002_00970at 1076.657 kb on - strand, within MIT1002_00970at 1076.657 kb on - strand, within MIT1002_00970at 1076.657 kb on - strand, within MIT1002_00970at 1076.657 kb on - strand, within MIT1002_00970at 1076.715 kb on + strand, within MIT1002_00970at 1076.759 kb on + strand, within MIT1002_00970at 1076.815 kb on - strand, within MIT1002_00970at 1076.815 kb on - strand, within MIT1002_00970at 1076.843 kb on + strand, within MIT1002_00970at 1076.844 kb on - strand, within MIT1002_00970at 1076.851 kb on - strand, within MIT1002_00970at 1076.851 kb on - strand, within MIT1002_00970at 1076.853 kb on + strand, within MIT1002_00970at 1076.908 kb on + strand, within MIT1002_00970at 1076.942 kb on - strand, within MIT1002_00970at 1076.953 kb on + strand, within MIT1002_00970at 1076.988 kb on - strand, within MIT1002_00970at 1077.006 kb on - strand, within MIT1002_00970at 1077.006 kb on - strand, within MIT1002_00970at 1077.084 kb on + strand, within MIT1002_00970at 1077.087 kb on - strand, within MIT1002_00970at 1077.118 kb on + strand, within MIT1002_00970at 1077.118 kb on + strand, within MIT1002_00970at 1077.118 kb on + strand, within MIT1002_00970at 1077.126 kb on - strand, within MIT1002_00970at 1077.126 kb on - strand, within MIT1002_00970at 1077.126 kb on - strand, within MIT1002_00970at 1077.136 kb on - strand, within MIT1002_00970at 1077.147 kb on - strand, within MIT1002_00970at 1077.167 kb on - strand, within MIT1002_00970at 1077.194 kb on + strand, within MIT1002_00970at 1077.354 kb on + strandat 1077.370 kb on - strandat 1077.432 kb on + strandat 1077.481 kb on + strand, within MIT1002_00971at 1077.551 kb on + strand, within MIT1002_00971at 1077.559 kb on - strand, within MIT1002_00971at 1077.625 kb on - strand, within MIT1002_00971at 1077.687 kb on - strand, within MIT1002_00971at 1077.691 kb on + strand, within MIT1002_00971at 1077.693 kb on + strand, within MIT1002_00971at 1077.722 kb on + strandat 1077.908 kb on - strandat 1078.009 kb on + strand, within MIT1002_00972at 1078.035 kb on - strand, within MIT1002_00972at 1078.095 kb on + strand, within MIT1002_00972at 1078.100 kb on + strand, within MIT1002_00972at 1078.111 kb on - strand, within MIT1002_00972at 1078.124 kb on + strand, within MIT1002_00972at 1078.130 kb on - strand, within MIT1002_00972at 1078.130 kb on - strand, within MIT1002_00972at 1078.132 kb on - strand, within MIT1002_00972at 1078.284 kb on - strand, within MIT1002_00972at 1078.376 kb on + strand, within MIT1002_00972at 1078.429 kb on + strand, within MIT1002_00972at 1078.437 kb on - strand, within MIT1002_00972at 1078.437 kb on - strand, within MIT1002_00972at 1078.442 kb on - strand, within MIT1002_00972at 1078.442 kb on - strand, within MIT1002_00972

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6
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1,075,447 - MIT1002_00969 0.15 -0.5
1,075,448 + MIT1002_00969 0.15 +1.5
1,075,448 + MIT1002_00969 0.15 +0.7
1,075,456 - MIT1002_00969 0.16 -0.6
1,075,456 - MIT1002_00969 0.16 +0.8
1,075,456 - MIT1002_00969 0.16 +2.2
1,075,456 - MIT1002_00969 0.16 +1.5
1,075,456 - MIT1002_00969 0.16 +0.5
1,075,511 + MIT1002_00969 0.22 +2.0
1,075,518 - MIT1002_00969 0.23 +0.9
1,075,524 + MIT1002_00969 0.23 +1.1
1,075,554 + MIT1002_00969 0.27 +1.0
1,075,562 - MIT1002_00969 0.27 -0.5
1,075,573 + MIT1002_00969 0.29 +0.2
1,075,595 + MIT1002_00969 0.31 +0.7
1,075,595 + MIT1002_00969 0.31 +2.1
1,075,595 + MIT1002_00969 0.31 +1.2
1,075,603 - MIT1002_00969 0.32 +2.0
1,075,603 - MIT1002_00969 0.32 -0.7
1,075,683 + MIT1002_00969 0.40 +2.0
1,075,745 - MIT1002_00969 0.47 +1.7
1,075,752 + MIT1002_00969 0.48 +1.5
1,075,889 + MIT1002_00969 0.62 +0.5
1,075,969 - MIT1002_00969 0.70 +1.0
1,076,432 + -2.3
1,076,432 + -1.2
1,076,440 - -1.2
1,076,487 - -0.9
1,076,545 + MIT1002_00970 0.12 +0.2
1,076,553 - MIT1002_00970 0.12 -3.0
1,076,553 - MIT1002_00970 0.12 -1.1
1,076,587 - MIT1002_00970 0.16 -1.3
1,076,587 - MIT1002_00970 0.16 -0.6
1,076,592 + MIT1002_00970 0.16 -0.0
1,076,592 - MIT1002_00970 0.16 -3.8
1,076,644 + MIT1002_00970 0.21 -1.7
1,076,649 + MIT1002_00970 0.22 -1.1
1,076,649 + MIT1002_00970 0.22 -0.8
1,076,649 + MIT1002_00970 0.22 +0.2
1,076,652 - MIT1002_00970 0.22 -1.3
1,076,652 - MIT1002_00970 0.22 -2.1
1,076,656 + MIT1002_00970 0.22 -3.4
1,076,657 - MIT1002_00970 0.22 -1.9
1,076,657 - MIT1002_00970 0.22 -0.6
1,076,657 - MIT1002_00970 0.22 -1.4
1,076,657 - MIT1002_00970 0.22 -2.1
1,076,657 - MIT1002_00970 0.22 -2.4
1,076,657 - MIT1002_00970 0.22 -1.8
1,076,657 - MIT1002_00970 0.22 -3.4
1,076,657 - MIT1002_00970 0.22 -0.2
1,076,715 + MIT1002_00970 0.28 -1.1
1,076,759 + MIT1002_00970 0.32 -1.7
1,076,815 - MIT1002_00970 0.38 +1.0
1,076,815 - MIT1002_00970 0.38 -3.7
1,076,843 + MIT1002_00970 0.41 -2.6
1,076,844 - MIT1002_00970 0.41 -0.3
1,076,851 - MIT1002_00970 0.41 -1.3
1,076,851 - MIT1002_00970 0.41 -4.4
1,076,853 + MIT1002_00970 0.42 -2.2
1,076,908 + MIT1002_00970 0.47 -1.0
1,076,942 - MIT1002_00970 0.50 -1.3
1,076,953 + MIT1002_00970 0.51 -0.3
1,076,988 - MIT1002_00970 0.55 -1.9
1,077,006 - MIT1002_00970 0.57 -1.9
1,077,006 - MIT1002_00970 0.57 -3.2
1,077,084 + MIT1002_00970 0.64 -4.2
1,077,087 - MIT1002_00970 0.65 -0.7
1,077,118 + MIT1002_00970 0.68 -2.4
1,077,118 + MIT1002_00970 0.68 -0.3
1,077,118 + MIT1002_00970 0.68 -3.8
1,077,126 - MIT1002_00970 0.68 -1.2
1,077,126 - MIT1002_00970 0.68 +0.2
1,077,126 - MIT1002_00970 0.68 -2.8
1,077,136 - MIT1002_00970 0.69 -0.2
1,077,147 - MIT1002_00970 0.70 -3.1
1,077,167 - MIT1002_00970 0.72 -2.7
1,077,194 + MIT1002_00970 0.75 -3.2
1,077,354 + -2.0
1,077,370 - -0.7
1,077,432 + -1.1
1,077,481 + MIT1002_00971 0.12 -1.8
1,077,551 + MIT1002_00971 0.35 -0.0
1,077,559 - MIT1002_00971 0.37 -0.8
1,077,625 - MIT1002_00971 0.59 +1.8
1,077,687 - MIT1002_00971 0.80 +1.1
1,077,691 + MIT1002_00971 0.81 -1.3
1,077,693 + MIT1002_00971 0.82 +1.0
1,077,722 + +0.8
1,077,908 - +1.7
1,078,009 + MIT1002_00972 0.11 +0.9
1,078,035 - MIT1002_00972 0.12 +1.0
1,078,095 + MIT1002_00972 0.16 +0.2
1,078,100 + MIT1002_00972 0.17 +0.2
1,078,111 - MIT1002_00972 0.17 -1.3
1,078,124 + MIT1002_00972 0.18 -0.9
1,078,130 - MIT1002_00972 0.18 +3.2
1,078,130 - MIT1002_00972 0.18 +2.5
1,078,132 - MIT1002_00972 0.19 +0.7
1,078,284 - MIT1002_00972 0.29 +1.7
1,078,376 + MIT1002_00972 0.35 +0.7
1,078,429 + MIT1002_00972 0.38 -3.2
1,078,437 - MIT1002_00972 0.39 -0.3
1,078,437 - MIT1002_00972 0.39 -0.2
1,078,442 - MIT1002_00972 0.39 -0.6
1,078,442 - MIT1002_00972 0.39 -0.2

Or see this region's nucleotide sequence