Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00888

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00886 and MIT1002_00887 are separated by 24 nucleotidesMIT1002_00887 and MIT1002_00888 are separated by 84 nucleotidesMIT1002_00888 and MIT1002_00889 are separated by 138 nucleotidesMIT1002_00889 and MIT1002_00890 are separated by 220 nucleotides MIT1002_00886: MIT1002_00886 - hemolysin, at 977,521 to 978,195 _00886 MIT1002_00887: MIT1002_00887 - hypothetical protein, at 978,220 to 978,459 _00887 MIT1002_00888: MIT1002_00888 - Organic hydroperoxide resistance transcriptional regulator, at 978,544 to 978,987 _00888 MIT1002_00889: MIT1002_00889 - General stress protein 17o, at 979,126 to 979,554 _00889 MIT1002_00890: MIT1002_00890 - Aminopeptidase N, at 979,775 to 981,706 _00890 Position (kb) 978 979Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 977.639 kb on - strand, within MIT1002_00886at 977.676 kb on - strand, within MIT1002_00886at 977.686 kb on - strand, within MIT1002_00886at 977.702 kb on + strand, within MIT1002_00886at 977.707 kb on + strand, within MIT1002_00886at 977.708 kb on + strand, within MIT1002_00886at 977.713 kb on + strand, within MIT1002_00886at 977.714 kb on - strand, within MIT1002_00886at 977.770 kb on + strand, within MIT1002_00886at 977.770 kb on + strand, within MIT1002_00886at 977.770 kb on + strand, within MIT1002_00886at 977.778 kb on - strand, within MIT1002_00886at 977.840 kb on - strand, within MIT1002_00886at 977.933 kb on + strand, within MIT1002_00886at 977.994 kb on + strand, within MIT1002_00886at 978.001 kb on + strand, within MIT1002_00886at 978.084 kb on + strand, within MIT1002_00886at 978.104 kb on - strand, within MIT1002_00886at 978.104 kb on - strand, within MIT1002_00886at 978.104 kb on - strand, within MIT1002_00886at 978.123 kb on + strand, within MIT1002_00886at 978.128 kb on + strandat 978.128 kb on + strandat 978.136 kb on - strandat 978.136 kb on - strandat 978.243 kb on + strandat 978.335 kb on - strand, within MIT1002_00887at 978.512 kb on + strandat 978.512 kb on + strandat 978.519 kb on + strandat 978.520 kb on - strandat 978.520 kb on - strandat 978.527 kb on - strandat 978.547 kb on + strandat 978.615 kb on - strand, within MIT1002_00888at 978.632 kb on + strand, within MIT1002_00888at 978.661 kb on - strand, within MIT1002_00888at 978.788 kb on + strand, within MIT1002_00888at 978.796 kb on - strand, within MIT1002_00888at 978.796 kb on - strand, within MIT1002_00888at 978.804 kb on - strand, within MIT1002_00888at 978.863 kb on - strand, within MIT1002_00888at 978.914 kb on + strand, within MIT1002_00888at 978.934 kb on - strand, within MIT1002_00888at 978.991 kb on + strandat 978.999 kb on - strandat 978.999 kb on - strandat 978.999 kb on - strandat 979.109 kb on + strandat 979.117 kb on - strandat 979.127 kb on - strandat 979.154 kb on - strandat 979.217 kb on + strand, within MIT1002_00889at 979.217 kb on + strand, within MIT1002_00889at 979.225 kb on - strand, within MIT1002_00889at 979.235 kb on - strand, within MIT1002_00889at 979.235 kb on - strand, within MIT1002_00889at 979.328 kb on - strand, within MIT1002_00889at 979.373 kb on - strand, within MIT1002_00889at 979.402 kb on + strand, within MIT1002_00889at 979.452 kb on + strand, within MIT1002_00889at 979.465 kb on + strand, within MIT1002_00889at 979.476 kb on + strand, within MIT1002_00889at 979.545 kb on - strandat 979.598 kb on - strandat 979.637 kb on + strandat 979.637 kb on + strandat 979.640 kb on - strandat 979.645 kb on - strandat 979.653 kb on + strandat 979.661 kb on - strandat 979.698 kb on + strandat 979.709 kb on - strandat 979.835 kb on + strandat 979.843 kb on - strandat 979.843 kb on - strandat 979.905 kb on - strandat 979.911 kb on + strandat 979.962 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6
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977,639 - MIT1002_00886 0.17 +0.5
977,676 - MIT1002_00886 0.23 -2.8
977,686 - MIT1002_00886 0.24 -0.5
977,702 + MIT1002_00886 0.27 -2.3
977,707 + MIT1002_00886 0.28 +1.9
977,708 + MIT1002_00886 0.28 +0.6
977,713 + MIT1002_00886 0.28 +1.0
977,714 - MIT1002_00886 0.29 -1.4
977,770 + MIT1002_00886 0.37 -1.7
977,770 + MIT1002_00886 0.37 -0.9
977,770 + MIT1002_00886 0.37 +0.5
977,778 - MIT1002_00886 0.38 +1.7
977,840 - MIT1002_00886 0.47 -0.8
977,933 + MIT1002_00886 0.61 -0.9
977,994 + MIT1002_00886 0.70 -1.2
978,001 + MIT1002_00886 0.71 +0.1
978,084 + MIT1002_00886 0.83 -1.4
978,104 - MIT1002_00886 0.86 +0.6
978,104 - MIT1002_00886 0.86 +0.7
978,104 - MIT1002_00886 0.86 -0.2
978,123 + MIT1002_00886 0.89 -0.9
978,128 + -0.2
978,128 + +0.5
978,136 - -2.2
978,136 - -1.2
978,243 + -1.6
978,335 - MIT1002_00887 0.48 +0.9
978,512 + -0.9
978,512 + -0.9
978,519 + +0.8
978,520 - -1.2
978,520 - +0.4
978,527 - +0.2
978,547 + -1.1
978,615 - MIT1002_00888 0.16 -0.9
978,632 + MIT1002_00888 0.20 -1.5
978,661 - MIT1002_00888 0.26 -3.8
978,788 + MIT1002_00888 0.55 -0.1
978,796 - MIT1002_00888 0.57 -0.5
978,796 - MIT1002_00888 0.57 -2.4
978,804 - MIT1002_00888 0.59 -2.3
978,863 - MIT1002_00888 0.72 -4.0
978,914 + MIT1002_00888 0.83 +0.7
978,934 - MIT1002_00888 0.88 -2.9
978,991 + -0.0
978,999 - -0.5
978,999 - -0.9
978,999 - +0.7
979,109 + -1.4
979,117 - +0.3
979,127 - +1.2
979,154 - -0.1
979,217 + MIT1002_00889 0.21 +1.8
979,217 + MIT1002_00889 0.21 +0.2
979,225 - MIT1002_00889 0.23 +0.9
979,235 - MIT1002_00889 0.25 -2.5
979,235 - MIT1002_00889 0.25 -0.6
979,328 - MIT1002_00889 0.47 -0.3
979,373 - MIT1002_00889 0.58 +1.4
979,402 + MIT1002_00889 0.64 +0.0
979,452 + MIT1002_00889 0.76 +0.0
979,465 + MIT1002_00889 0.79 +0.1
979,476 + MIT1002_00889 0.82 +0.5
979,545 - -2.1
979,598 - +0.3
979,637 + -0.9
979,637 + +0.9
979,640 - +2.9
979,645 - -1.7
979,653 + -0.8
979,661 - -0.6
979,698 + -1.6
979,709 - -0.7
979,835 + -0.9
979,843 - -0.7
979,843 - +0.5
979,905 - +0.0
979,911 + -0.8
979,962 - -1.3

Or see this region's nucleotide sequence