Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00871 and MIT1002_00872 are separated by 16 nucleotides MIT1002_00872 and MIT1002_00873 are separated by 187 nucleotides MIT1002_00873 and MIT1002_00874 are separated by 209 nucleotides
MIT1002_00871: MIT1002_00871 - Exopolyphosphatase, at 960,439 to 962,001
_00871
MIT1002_00872: MIT1002_00872 - Polyphosphate kinase, at 962,018 to 964,090
_00872
MIT1002_00873: MIT1002_00873 - formyltetrahydrofolate deformylase, at 964,278 to 964,784
_00873
MIT1002_00874: MIT1002_00874 - Phosphate transport system permease protein PstC, at 964,994 to 967,171
_00874
Position (kb)
962
963
964
965 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3
4 at 961.087 kb on - strand, within MIT1002_00871 at 961.119 kb on - strand, within MIT1002_00871 at 961.191 kb on + strand, within MIT1002_00871 at 961.284 kb on + strand, within MIT1002_00871 at 961.294 kb on + strand, within MIT1002_00871 at 961.328 kb on + strand, within MIT1002_00871 at 961.360 kb on - strand, within MIT1002_00871 at 961.409 kb on - strand, within MIT1002_00871 at 961.470 kb on + strand, within MIT1002_00871 at 961.478 kb on - strand, within MIT1002_00871 at 961.510 kb on + strand, within MIT1002_00871 at 961.557 kb on - strand, within MIT1002_00871 at 961.566 kb on + strand, within MIT1002_00871 at 961.782 kb on + strand, within MIT1002_00871 at 961.870 kb on - strand at 961.941 kb on - strand at 962.027 kb on + strand at 962.108 kb on + strand at 962.108 kb on + strand at 962.182 kb on + strand at 962.190 kb on - strand at 962.190 kb on - strand at 962.191 kb on - strand at 962.213 kb on - strand at 962.261 kb on + strand, within MIT1002_00872 at 962.267 kb on - strand, within MIT1002_00872 at 962.374 kb on + strand, within MIT1002_00872 at 962.400 kb on + strand, within MIT1002_00872 at 962.435 kb on + strand, within MIT1002_00872 at 962.506 kb on + strand, within MIT1002_00872 at 962.619 kb on - strand, within MIT1002_00872 at 962.679 kb on + strand, within MIT1002_00872 at 962.679 kb on + strand, within MIT1002_00872 at 962.706 kb on + strand, within MIT1002_00872 at 962.744 kb on + strand, within MIT1002_00872 at 962.744 kb on + strand, within MIT1002_00872 at 962.752 kb on - strand, within MIT1002_00872 at 962.813 kb on + strand, within MIT1002_00872 at 962.821 kb on - strand, within MIT1002_00872 at 962.829 kb on + strand, within MIT1002_00872 at 962.837 kb on - strand, within MIT1002_00872 at 962.909 kb on + strand, within MIT1002_00872 at 962.917 kb on - strand, within MIT1002_00872 at 962.917 kb on - strand, within MIT1002_00872 at 963.041 kb on + strand, within MIT1002_00872 at 963.043 kb on + strand, within MIT1002_00872 at 963.048 kb on + strand, within MIT1002_00872 at 963.053 kb on + strand, within MIT1002_00872 at 963.053 kb on + strand, within MIT1002_00872 at 963.056 kb on + strand, within MIT1002_00872 at 963.056 kb on - strand, within MIT1002_00872 at 963.056 kb on - strand, within MIT1002_00872 at 963.056 kb on - strand, within MIT1002_00872 at 963.056 kb on - strand, within MIT1002_00872 at 963.060 kb on + strand, within MIT1002_00872 at 963.061 kb on - strand, within MIT1002_00872 at 963.068 kb on - strand, within MIT1002_00872 at 963.103 kb on - strand, within MIT1002_00872 at 963.116 kb on + strand, within MIT1002_00872 at 963.197 kb on + strand, within MIT1002_00872 at 963.202 kb on + strand, within MIT1002_00872 at 963.202 kb on + strand, within MIT1002_00872 at 963.208 kb on - strand, within MIT1002_00872 at 963.219 kb on + strand, within MIT1002_00872 at 963.227 kb on - strand, within MIT1002_00872 at 963.261 kb on - strand, within MIT1002_00872 at 963.322 kb on + strand, within MIT1002_00872 at 963.330 kb on + strand, within MIT1002_00872 at 963.330 kb on - strand, within MIT1002_00872 at 963.560 kb on - strand, within MIT1002_00872 at 963.649 kb on - strand, within MIT1002_00872 at 963.831 kb on + strand, within MIT1002_00872 at 963.873 kb on - strand, within MIT1002_00872 at 963.922 kb on + strand at 964.070 kb on + strand at 964.070 kb on + strand at 964.256 kb on - strand at 964.322 kb on + strand at 964.322 kb on + strand at 964.340 kb on - strand, within MIT1002_00873 at 964.340 kb on - strand, within MIT1002_00873 at 964.437 kb on + strand, within MIT1002_00873 at 964.473 kb on + strand, within MIT1002_00873 at 964.481 kb on - strand, within MIT1002_00873 at 964.487 kb on - strand, within MIT1002_00873 at 964.514 kb on - strand, within MIT1002_00873 at 964.591 kb on - strand, within MIT1002_00873 at 964.614 kb on - strand, within MIT1002_00873 at 964.659 kb on + strand, within MIT1002_00873 at 964.680 kb on + strand, within MIT1002_00873 at 964.686 kb on - strand, within MIT1002_00873 at 964.693 kb on - strand, within MIT1002_00873 at 964.717 kb on + strand, within MIT1002_00873 at 964.717 kb on + strand, within MIT1002_00873 at 964.717 kb on + strand, within MIT1002_00873 at 964.717 kb on + strand, within MIT1002_00873 at 964.725 kb on - strand, within MIT1002_00873 at 964.744 kb on + strand at 964.757 kb on - strand at 964.772 kb on - strand at 964.792 kb on + strand at 964.844 kb on - strand at 964.858 kb on - strand at 964.894 kb on + strand at 964.910 kb on + strand at 964.918 kb on + strand at 964.920 kb on + strand at 964.920 kb on + strand at 964.926 kb on - strand at 964.926 kb on - strand at 964.926 kb on - strand at 965.005 kb on - strand at 965.060 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6 remove 961,087 - MIT1002_00871 0.41 +2.1 961,119 - MIT1002_00871 0.44 -0.5 961,191 + MIT1002_00871 0.48 -0.6 961,284 + MIT1002_00871 0.54 -0.2 961,294 + MIT1002_00871 0.55 -0.5 961,328 + MIT1002_00871 0.57 -0.3 961,360 - MIT1002_00871 0.59 +0.5 961,409 - MIT1002_00871 0.62 -1.4 961,470 + MIT1002_00871 0.66 +0.5 961,478 - MIT1002_00871 0.66 -1.2 961,510 + MIT1002_00871 0.69 -0.5 961,557 - MIT1002_00871 0.72 -3.4 961,566 + MIT1002_00871 0.72 +1.0 961,782 + MIT1002_00871 0.86 -3.2 961,870 - +1.4 961,941 - -0.7 962,027 + -0.5 962,108 + -3.1 962,108 + +0.3 962,182 + -1.4 962,190 - -0.8 962,190 - -1.1 962,191 - -1.1 962,213 - -2.3 962,261 + MIT1002_00872 0.12 -1.8 962,267 - MIT1002_00872 0.12 -1.8 962,374 + MIT1002_00872 0.17 -1.3 962,400 + MIT1002_00872 0.18 -2.9 962,435 + MIT1002_00872 0.20 -2.6 962,506 + MIT1002_00872 0.24 -2.9 962,619 - MIT1002_00872 0.29 -1.9 962,679 + MIT1002_00872 0.32 -3.0 962,679 + MIT1002_00872 0.32 -2.6 962,706 + MIT1002_00872 0.33 -3.1 962,744 + MIT1002_00872 0.35 +0.3 962,744 + MIT1002_00872 0.35 -0.1 962,752 - MIT1002_00872 0.35 -3.1 962,813 + MIT1002_00872 0.38 -1.7 962,821 - MIT1002_00872 0.39 -1.3 962,829 + MIT1002_00872 0.39 -1.7 962,837 - MIT1002_00872 0.40 -1.4 962,909 + MIT1002_00872 0.43 -0.6 962,917 - MIT1002_00872 0.43 -4.0 962,917 - MIT1002_00872 0.43 -2.4 963,041 + MIT1002_00872 0.49 +0.8 963,043 + MIT1002_00872 0.49 -0.1 963,048 + MIT1002_00872 0.50 -4.2 963,053 + MIT1002_00872 0.50 -5.3 963,053 + MIT1002_00872 0.50 -1.6 963,056 + MIT1002_00872 0.50 -1.6 963,056 - MIT1002_00872 0.50 -2.3 963,056 - MIT1002_00872 0.50 -1.9 963,056 - MIT1002_00872 0.50 -2.9 963,056 - MIT1002_00872 0.50 -0.7 963,060 + MIT1002_00872 0.50 -0.4 963,061 - MIT1002_00872 0.50 -0.1 963,068 - MIT1002_00872 0.51 -2.1 963,103 - MIT1002_00872 0.52 -3.7 963,116 + MIT1002_00872 0.53 +0.1 963,197 + MIT1002_00872 0.57 -1.8 963,202 + MIT1002_00872 0.57 -3.6 963,202 + MIT1002_00872 0.57 -3.7 963,208 - MIT1002_00872 0.57 +0.3 963,219 + MIT1002_00872 0.58 -0.9 963,227 - MIT1002_00872 0.58 -1.7 963,261 - MIT1002_00872 0.60 -1.0 963,322 + MIT1002_00872 0.63 -0.5 963,330 + MIT1002_00872 0.63 -2.0 963,330 - MIT1002_00872 0.63 -2.7 963,560 - MIT1002_00872 0.74 -4.1 963,649 - MIT1002_00872 0.79 -1.7 963,831 + MIT1002_00872 0.87 -1.4 963,873 - MIT1002_00872 0.89 -2.9 963,922 + -2.8 964,070 + -2.5 964,070 + -2.2 964,256 - +0.9 964,322 + -1.4 964,322 + -1.2 964,340 - MIT1002_00873 0.12 +2.1 964,340 - MIT1002_00873 0.12 -1.1 964,437 + MIT1002_00873 0.31 +0.8 964,473 + MIT1002_00873 0.38 +0.7 964,481 - MIT1002_00873 0.40 -0.1 964,487 - MIT1002_00873 0.41 +4.2 964,514 - MIT1002_00873 0.47 -1.1 964,591 - MIT1002_00873 0.62 +0.6 964,614 - MIT1002_00873 0.66 -0.5 964,659 + MIT1002_00873 0.75 -1.2 964,680 + MIT1002_00873 0.79 -3.3 964,686 - MIT1002_00873 0.80 -2.5 964,693 - MIT1002_00873 0.82 +0.1 964,717 + MIT1002_00873 0.87 -1.5 964,717 + MIT1002_00873 0.87 -0.9 964,717 + MIT1002_00873 0.87 -1.9 964,717 + MIT1002_00873 0.87 +0.3 964,725 - MIT1002_00873 0.88 -1.3 964,744 + -3.7 964,757 - -0.6 964,772 - -0.4 964,792 + -2.1 964,844 - +0.1 964,858 - -0.8 964,894 + +1.2 964,910 + -0.8 964,918 + -0.5 964,920 + -1.0 964,920 + -1.1 964,926 - -2.7 964,926 - -0.5 964,926 - -1.2 965,005 - -2.9 965,060 - -0.1
Or see this region's nucleotide sequence