Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00868 and MIT1002_00869 are separated by 106 nucleotides MIT1002_00869 and MIT1002_00870 are separated by 228 nucleotides
MIT1002_00868: MIT1002_00868 - Toluene efflux pump outer membrane protein TtgF precursor, at 955,913 to 957,391
_00868
MIT1002_00869: MIT1002_00869 - hypothetical protein, at 957,498 to 957,953
_00869
MIT1002_00870: MIT1002_00870 - Prolyl tripeptidyl peptidase precursor, at 958,182 to 960,308
_00870
Position (kb) 957
958 Strain fitness (log2 ratio) -2
-1
0
1
2 at 956.503 kb on + strand, within MIT1002_00868 at 956.523 kb on + strand, within MIT1002_00868 at 956.583 kb on + strand, within MIT1002_00868 at 956.584 kb on + strand, within MIT1002_00868 at 956.584 kb on + strand, within MIT1002_00868 at 956.592 kb on - strand, within MIT1002_00868 at 956.609 kb on - strand, within MIT1002_00868 at 956.727 kb on + strand, within MIT1002_00868 at 956.751 kb on + strand, within MIT1002_00868 at 956.759 kb on - strand, within MIT1002_00868 at 956.780 kb on - strand, within MIT1002_00868 at 956.788 kb on - strand, within MIT1002_00868 at 956.788 kb on - strand, within MIT1002_00868 at 956.788 kb on - strand, within MIT1002_00868 at 956.793 kb on - strand, within MIT1002_00868 at 956.805 kb on - strand, within MIT1002_00868 at 956.816 kb on + strand, within MIT1002_00868 at 956.816 kb on + strand, within MIT1002_00868 at 956.816 kb on + strand, within MIT1002_00868 at 956.816 kb on + strand, within MIT1002_00868 at 956.816 kb on + strand, within MIT1002_00868 at 956.824 kb on - strand, within MIT1002_00868 at 956.824 kb on - strand, within MIT1002_00868 at 956.831 kb on + strand, within MIT1002_00868 at 956.831 kb on - strand, within MIT1002_00868 at 956.957 kb on + strand, within MIT1002_00868 at 956.965 kb on - strand, within MIT1002_00868 at 956.965 kb on - strand, within MIT1002_00868 at 956.984 kb on - strand, within MIT1002_00868 at 957.040 kb on + strand, within MIT1002_00868 at 957.048 kb on - strand, within MIT1002_00868 at 957.286 kb on + strand at 957.302 kb on - strand at 957.313 kb on + strand at 957.480 kb on + strand at 957.481 kb on - strand at 957.650 kb on + strand, within MIT1002_00869 at 957.662 kb on + strand, within MIT1002_00869 at 957.786 kb on + strand, within MIT1002_00869 at 957.799 kb on + strand, within MIT1002_00869 at 957.837 kb on + strand, within MIT1002_00869 at 957.897 kb on - strand, within MIT1002_00869 at 957.956 kb on + strand at 957.957 kb on + strand at 957.975 kb on + strand at 957.976 kb on - strand at 958.028 kb on + strand at 958.028 kb on + strand at 958.028 kb on + strand at 958.028 kb on + strand at 958.031 kb on + strand at 958.036 kb on - strand at 958.036 kb on - strand at 958.036 kb on - strand at 958.036 kb on - strand at 958.075 kb on - strand at 958.242 kb on + strand at 958.250 kb on - strand at 958.255 kb on - strand at 958.292 kb on + strand at 958.372 kb on + strand at 958.372 kb on + strand at 958.382 kb on - strand at 958.382 kb on - strand at 958.425 kb on - strand, within MIT1002_00870 at 958.454 kb on + strand, within MIT1002_00870 at 958.541 kb on + strand, within MIT1002_00870 at 958.589 kb on - strand, within MIT1002_00870 at 958.647 kb on - strand, within MIT1002_00870 at 958.830 kb on + strand, within MIT1002_00870
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6 remove 956,503 + MIT1002_00868 0.40 -0.3 956,523 + MIT1002_00868 0.41 -0.2 956,583 + MIT1002_00868 0.45 -1.4 956,584 + MIT1002_00868 0.45 -0.6 956,584 + MIT1002_00868 0.45 -0.1 956,592 - MIT1002_00868 0.46 -2.1 956,609 - MIT1002_00868 0.47 -1.5 956,727 + MIT1002_00868 0.55 -0.4 956,751 + MIT1002_00868 0.57 +0.6 956,759 - MIT1002_00868 0.57 -0.2 956,780 - MIT1002_00868 0.59 -1.0 956,788 - MIT1002_00868 0.59 -0.3 956,788 - MIT1002_00868 0.59 -0.1 956,788 - MIT1002_00868 0.59 +0.1 956,793 - MIT1002_00868 0.59 -1.5 956,805 - MIT1002_00868 0.60 +0.5 956,816 + MIT1002_00868 0.61 +1.0 956,816 + MIT1002_00868 0.61 -0.4 956,816 + MIT1002_00868 0.61 -0.6 956,816 + MIT1002_00868 0.61 +0.4 956,816 + MIT1002_00868 0.61 -0.9 956,824 - MIT1002_00868 0.62 -1.9 956,824 - MIT1002_00868 0.62 -1.2 956,831 + MIT1002_00868 0.62 +0.5 956,831 - MIT1002_00868 0.62 +0.2 956,957 + MIT1002_00868 0.71 +0.5 956,965 - MIT1002_00868 0.71 -0.5 956,965 - MIT1002_00868 0.71 +0.6 956,984 - MIT1002_00868 0.72 -0.9 957,040 + MIT1002_00868 0.76 +1.0 957,048 - MIT1002_00868 0.77 +1.5 957,286 + -0.7 957,302 - +0.6 957,313 + -0.1 957,480 + +0.3 957,481 - -2.1 957,650 + MIT1002_00869 0.33 -0.8 957,662 + MIT1002_00869 0.36 -0.9 957,786 + MIT1002_00869 0.63 -1.9 957,799 + MIT1002_00869 0.66 -0.4 957,837 + MIT1002_00869 0.74 +1.0 957,897 - MIT1002_00869 0.88 +1.3 957,956 + +0.2 957,957 + +1.6 957,975 + +2.7 957,976 - +0.4 958,028 + -1.4 958,028 + +0.2 958,028 + -2.0 958,028 + -0.9 958,031 + +1.6 958,036 - +0.2 958,036 - +2.0 958,036 - +0.9 958,036 - -1.3 958,075 - +0.3 958,242 + +0.5 958,250 - +1.4 958,255 - -0.1 958,292 + +1.0 958,372 + -1.1 958,372 + -1.8 958,382 - +0.4 958,382 - -0.6 958,425 - MIT1002_00870 0.11 -0.6 958,454 + MIT1002_00870 0.13 -1.3 958,541 + MIT1002_00870 0.17 +0.9 958,589 - MIT1002_00870 0.19 -0.5 958,647 - MIT1002_00870 0.22 +1.4 958,830 + MIT1002_00870 0.30 -0.9
Or see this region's nucleotide sequence