Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00833

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00831 and MIT1002_00832 are separated by 0 nucleotidesMIT1002_00832 and MIT1002_00833 are separated by 2 nucleotidesMIT1002_00833 and MIT1002_00834 are separated by 848 nucleotides MIT1002_00831: MIT1002_00831 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase KdsC, at 913,146 to 913,694 _00831 MIT1002_00832: MIT1002_00832 - Arabinose 5-phosphate isomerase KdsD, at 913,695 to 914,675 _00832 MIT1002_00833: MIT1002_00833 - Inner membrane protein YrbG, at 914,678 to 915,634 _00833 MIT1002_00834: MIT1002_00834 - putative ABC transporter ATP-binding protein, at 916,483 to 917,283 _00834 Position (kb) 914 915 916Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 914.751 kb on - strandat 914.842 kb on + strand, within MIT1002_00833at 914.844 kb on - strand, within MIT1002_00833at 914.904 kb on - strand, within MIT1002_00833at 914.910 kb on + strand, within MIT1002_00833at 914.918 kb on - strand, within MIT1002_00833at 914.918 kb on - strand, within MIT1002_00833at 914.918 kb on - strand, within MIT1002_00833at 914.920 kb on + strand, within MIT1002_00833at 914.928 kb on - strand, within MIT1002_00833at 915.027 kb on + strand, within MIT1002_00833at 915.093 kb on - strand, within MIT1002_00833at 915.095 kb on + strand, within MIT1002_00833at 915.095 kb on + strand, within MIT1002_00833at 915.103 kb on - strand, within MIT1002_00833at 915.103 kb on - strand, within MIT1002_00833at 915.103 kb on - strand, within MIT1002_00833at 915.103 kb on - strand, within MIT1002_00833at 915.143 kb on - strand, within MIT1002_00833at 915.270 kb on + strand, within MIT1002_00833at 915.337 kb on - strand, within MIT1002_00833at 915.365 kb on - strand, within MIT1002_00833at 915.365 kb on - strand, within MIT1002_00833at 915.769 kb on + strandat 915.775 kb on - strandat 915.845 kb on + strandat 915.845 kb on + strandat 916.251 kb on + strandat 916.251 kb on + strandat 916.251 kb on + strandat 916.251 kb on + strandat 916.251 kb on + strandat 916.259 kb on - strandat 916.259 kb on - strandat 916.259 kb on - strandat 916.259 kb on - strandat 916.259 kb on - strandat 916.355 kb on - strandat 916.358 kb on + strandat 916.388 kb on + strandat 916.444 kb on + strandat 916.481 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6
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914,751 - -0.1
914,842 + MIT1002_00833 0.17 -1.2
914,844 - MIT1002_00833 0.17 -0.6
914,904 - MIT1002_00833 0.24 -2.5
914,910 + MIT1002_00833 0.24 -0.9
914,918 - MIT1002_00833 0.25 -3.9
914,918 - MIT1002_00833 0.25 -1.4
914,918 - MIT1002_00833 0.25 -0.9
914,920 + MIT1002_00833 0.25 +1.1
914,928 - MIT1002_00833 0.26 -1.9
915,027 + MIT1002_00833 0.36 -2.0
915,093 - MIT1002_00833 0.43 -2.4
915,095 + MIT1002_00833 0.44 -0.9
915,095 + MIT1002_00833 0.44 -0.9
915,103 - MIT1002_00833 0.44 -1.6
915,103 - MIT1002_00833 0.44 +0.1
915,103 - MIT1002_00833 0.44 -0.9
915,103 - MIT1002_00833 0.44 -1.1
915,143 - MIT1002_00833 0.49 -1.8
915,270 + MIT1002_00833 0.62 -0.5
915,337 - MIT1002_00833 0.69 -2.3
915,365 - MIT1002_00833 0.72 -1.0
915,365 - MIT1002_00833 0.72 -1.5
915,769 + +1.4
915,775 - +0.1
915,845 + +0.5
915,845 + -0.5
916,251 + -0.8
916,251 + -0.8
916,251 + -3.0
916,251 + +1.4
916,251 + -0.4
916,259 - -1.1
916,259 - +1.7
916,259 - +0.8
916,259 - +0.8
916,259 - +1.5
916,355 - -0.4
916,358 + +0.2
916,388 + -0.1
916,444 + +0.2
916,481 + +1.4

Or see this region's nucleotide sequence