Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00827

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00824 and MIT1002_00825 are separated by 84 nucleotidesMIT1002_00825 and MIT1002_00826 are separated by 13 nucleotidesMIT1002_00826 and MIT1002_00827 are separated by 30 nucleotidesMIT1002_00827 and MIT1002_00828 are separated by 73 nucleotidesMIT1002_00828 and MIT1002_00829 are separated by 2 nucleotides MIT1002_00824: MIT1002_00824 - glmZ(sRNA)-inactivating NTPase, at 908,060 to 908,905 _00824 MIT1002_00825: MIT1002_00825 - Nitrogen regulatory protein, at 908,990 to 909,433 _00825 MIT1002_00826: MIT1002_00826 - Ribosome hibernation promoting factor, at 909,447 to 909,734 _00826 MIT1002_00827: MIT1002_00827 - RNA polymerase sigma-54 factor 2, at 909,765 to 911,246 _00827 MIT1002_00828: MIT1002_00828 - Lipopolysaccharide export system ATP-binding protein LptB, at 911,320 to 912,045 _00828 MIT1002_00829: MIT1002_00829 - Lipopolysaccharide export system protein LptA precursor, at 912,048 to 912,602 _00829 Position (kb) 909 910 911 912Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 908.775 kb on + strand, within MIT1002_00824at 908.776 kb on + strand, within MIT1002_00824at 908.776 kb on - strand, within MIT1002_00824at 908.907 kb on - strandat 908.941 kb on + strandat 908.979 kb on - strandat 909.099 kb on + strand, within MIT1002_00825at 909.104 kb on + strand, within MIT1002_00825at 909.104 kb on + strand, within MIT1002_00825at 909.188 kb on + strand, within MIT1002_00825at 909.196 kb on - strand, within MIT1002_00825at 909.196 kb on - strand, within MIT1002_00825at 909.196 kb on - strand, within MIT1002_00825at 909.262 kb on - strand, within MIT1002_00825at 909.277 kb on - strand, within MIT1002_00825at 909.311 kb on - strand, within MIT1002_00825at 909.411 kb on - strandat 909.417 kb on - strandat 909.515 kb on - strand, within MIT1002_00826at 909.528 kb on - strand, within MIT1002_00826at 909.562 kb on - strand, within MIT1002_00826at 909.572 kb on - strand, within MIT1002_00826at 909.708 kb on + strandat 909.842 kb on + strandat 909.961 kb on + strand, within MIT1002_00827at 909.961 kb on + strand, within MIT1002_00827at 910.608 kb on + strand, within MIT1002_00827at 910.771 kb on - strand, within MIT1002_00827at 910.920 kb on - strand, within MIT1002_00827at 910.952 kb on + strand, within MIT1002_00827at 911.122 kb on - strandat 911.122 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6
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908,775 + MIT1002_00824 0.85 +0.5
908,776 + MIT1002_00824 0.85 +0.6
908,776 - MIT1002_00824 0.85 -1.3
908,907 - +2.0
908,941 + -1.6
908,979 - -2.0
909,099 + MIT1002_00825 0.25 -2.9
909,104 + MIT1002_00825 0.26 +0.1
909,104 + MIT1002_00825 0.26 -2.3
909,188 + MIT1002_00825 0.45 -2.0
909,196 - MIT1002_00825 0.46 -0.4
909,196 - MIT1002_00825 0.46 +1.1
909,196 - MIT1002_00825 0.46 -2.4
909,262 - MIT1002_00825 0.61 -2.1
909,277 - MIT1002_00825 0.65 -2.0
909,311 - MIT1002_00825 0.72 -5.1
909,411 - -3.0
909,417 - -0.9
909,515 - MIT1002_00826 0.24 -4.4
909,528 - MIT1002_00826 0.28 -2.0
909,562 - MIT1002_00826 0.40 -2.8
909,572 - MIT1002_00826 0.43 -1.7
909,708 + -3.1
909,842 + +0.1
909,961 + MIT1002_00827 0.13 +0.7
909,961 + MIT1002_00827 0.13 -1.3
910,608 + MIT1002_00827 0.57 -0.3
910,771 - MIT1002_00827 0.68 -0.9
910,920 - MIT1002_00827 0.78 -1.1
910,952 + MIT1002_00827 0.80 -3.8
911,122 - +0.2
911,122 - -0.9

Or see this region's nucleotide sequence