Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00796 and MIT1002_00797 are separated by 208 nucleotides MIT1002_00797 and MIT1002_00798 are separated by 188 nucleotides MIT1002_00798 and MIT1002_00799 are separated by 15 nucleotides
MIT1002_00796: MIT1002_00796 - hydroxymethylglutaryl-CoA reductase (NADPH), at 883,015 to 884,181
_00796
MIT1002_00797: MIT1002_00797 - type IV pilus biogenesis/stability protein PilW, at 884,390 to 885,037
_00797
MIT1002_00798: MIT1002_00798 - hypothetical protein, at 885,226 to 885,927
_00798
MIT1002_00799: MIT1002_00799 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 885,943 to 886,788
_00799
Position (kb) 884
885
886 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 883.473 kb on + strand, within MIT1002_00796 at 883.516 kb on + strand, within MIT1002_00796 at 883.524 kb on - strand, within MIT1002_00796 at 883.560 kb on + strand, within MIT1002_00796 at 883.567 kb on + strand, within MIT1002_00796 at 883.578 kb on + strand, within MIT1002_00796 at 883.578 kb on + strand, within MIT1002_00796 at 883.586 kb on - strand, within MIT1002_00796 at 883.636 kb on + strand, within MIT1002_00796 at 883.639 kb on - strand, within MIT1002_00796 at 883.686 kb on + strand, within MIT1002_00796 at 883.728 kb on + strand, within MIT1002_00796 at 883.761 kb on + strand, within MIT1002_00796 at 883.799 kb on - strand, within MIT1002_00796 at 883.839 kb on + strand, within MIT1002_00796 at 883.861 kb on + strand, within MIT1002_00796 at 883.919 kb on + strand, within MIT1002_00796 at 883.926 kb on + strand, within MIT1002_00796 at 883.931 kb on + strand, within MIT1002_00796 at 883.937 kb on - strand, within MIT1002_00796 at 883.939 kb on - strand, within MIT1002_00796 at 883.939 kb on - strand, within MIT1002_00796 at 883.992 kb on - strand, within MIT1002_00796 at 884.003 kb on + strand, within MIT1002_00796 at 884.061 kb on + strand, within MIT1002_00796 at 884.061 kb on + strand, within MIT1002_00796 at 884.061 kb on + strand, within MIT1002_00796 at 884.061 kb on + strand, within MIT1002_00796 at 884.069 kb on - strand at 884.069 kb on - strand at 884.069 kb on - strand at 884.109 kb on + strand at 884.109 kb on + strand at 884.109 kb on + strand at 884.134 kb on - strand at 884.137 kb on + strand at 884.165 kb on + strand at 884.225 kb on + strand at 884.314 kb on - strand at 884.492 kb on + strand, within MIT1002_00797 at 884.501 kb on + strand, within MIT1002_00797 at 884.509 kb on - strand, within MIT1002_00797 at 884.509 kb on - strand, within MIT1002_00797 at 884.555 kb on + strand, within MIT1002_00797 at 884.563 kb on - strand, within MIT1002_00797 at 884.637 kb on + strand, within MIT1002_00797 at 884.642 kb on + strand, within MIT1002_00797 at 884.650 kb on - strand, within MIT1002_00797 at 884.678 kb on - strand, within MIT1002_00797 at 884.690 kb on + strand, within MIT1002_00797 at 884.698 kb on - strand, within MIT1002_00797 at 884.753 kb on + strand, within MIT1002_00797 at 884.753 kb on + strand, within MIT1002_00797 at 884.808 kb on + strand, within MIT1002_00797 at 884.821 kb on - strand, within MIT1002_00797 at 884.901 kb on + strand, within MIT1002_00797 at 884.928 kb on - strand, within MIT1002_00797 at 884.938 kb on - strand, within MIT1002_00797 at 885.205 kb on - strand at 885.207 kb on - strand at 885.214 kb on + strand at 885.214 kb on + strand at 885.214 kb on + strand at 885.214 kb on + strand at 885.214 kb on + strand at 885.214 kb on + strand at 885.222 kb on - strand at 885.222 kb on - strand at 885.222 kb on - strand at 885.222 kb on - strand at 885.292 kb on + strand at 885.315 kb on - strand, within MIT1002_00798 at 885.494 kb on - strand, within MIT1002_00798 at 885.496 kb on + strand, within MIT1002_00798 at 885.501 kb on + strand, within MIT1002_00798 at 885.505 kb on - strand, within MIT1002_00798 at 885.523 kb on + strand, within MIT1002_00798 at 885.523 kb on + strand, within MIT1002_00798 at 885.531 kb on - strand, within MIT1002_00798 at 885.574 kb on - strand, within MIT1002_00798 at 885.579 kb on + strand, within MIT1002_00798 at 885.589 kb on + strand, within MIT1002_00798 at 885.589 kb on + strand, within MIT1002_00798 at 885.597 kb on - strand, within MIT1002_00798 at 885.597 kb on - strand, within MIT1002_00798 at 885.608 kb on + strand, within MIT1002_00798 at 885.706 kb on - strand, within MIT1002_00798 at 885.810 kb on + strand, within MIT1002_00798 at 885.854 kb on + strand, within MIT1002_00798 at 885.854 kb on + strand, within MIT1002_00798 at 885.861 kb on - strand at 885.869 kb on + strand at 885.934 kb on - strand at 885.949 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6 remove 883,473 + MIT1002_00796 0.39 -1.0 883,516 + MIT1002_00796 0.43 -0.5 883,524 - MIT1002_00796 0.44 -0.4 883,560 + MIT1002_00796 0.47 -0.5 883,567 + MIT1002_00796 0.47 -0.5 883,578 + MIT1002_00796 0.48 +0.8 883,578 + MIT1002_00796 0.48 +0.4 883,586 - MIT1002_00796 0.49 -2.1 883,636 + MIT1002_00796 0.53 -1.6 883,639 - MIT1002_00796 0.53 -0.2 883,686 + MIT1002_00796 0.57 +1.2 883,728 + MIT1002_00796 0.61 -0.2 883,761 + MIT1002_00796 0.64 -2.3 883,799 - MIT1002_00796 0.67 +0.7 883,839 + MIT1002_00796 0.71 +0.8 883,861 + MIT1002_00796 0.72 +0.5 883,919 + MIT1002_00796 0.77 -2.0 883,926 + MIT1002_00796 0.78 -1.3 883,931 + MIT1002_00796 0.78 +0.7 883,937 - MIT1002_00796 0.79 -1.5 883,939 - MIT1002_00796 0.79 -1.1 883,939 - MIT1002_00796 0.79 -1.4 883,992 - MIT1002_00796 0.84 -2.8 884,003 + MIT1002_00796 0.85 -1.3 884,061 + MIT1002_00796 0.90 +0.8 884,061 + MIT1002_00796 0.90 +0.2 884,061 + MIT1002_00796 0.90 -0.7 884,061 + MIT1002_00796 0.90 +0.8 884,069 - +0.5 884,069 - +0.0 884,069 - +1.9 884,109 + -0.2 884,109 + -0.8 884,109 + -0.1 884,134 - -0.2 884,137 + -0.2 884,165 + +0.1 884,225 + +1.0 884,314 - +0.8 884,492 + MIT1002_00797 0.16 -0.6 884,501 + MIT1002_00797 0.17 -0.7 884,509 - MIT1002_00797 0.18 -0.9 884,509 - MIT1002_00797 0.18 -2.0 884,555 + MIT1002_00797 0.25 +0.0 884,563 - MIT1002_00797 0.27 -0.9 884,637 + MIT1002_00797 0.38 +0.6 884,642 + MIT1002_00797 0.39 -2.8 884,650 - MIT1002_00797 0.40 +0.6 884,678 - MIT1002_00797 0.44 -0.1 884,690 + MIT1002_00797 0.46 -0.5 884,698 - MIT1002_00797 0.48 -1.1 884,753 + MIT1002_00797 0.56 +0.1 884,753 + MIT1002_00797 0.56 -0.5 884,808 + MIT1002_00797 0.65 +1.3 884,821 - MIT1002_00797 0.67 +0.2 884,901 + MIT1002_00797 0.79 +0.8 884,928 - MIT1002_00797 0.83 +0.3 884,938 - MIT1002_00797 0.85 -2.7 885,205 - -0.1 885,207 - -0.2 885,214 + -0.7 885,214 + +1.9 885,214 + +0.2 885,214 + +0.3 885,214 + -0.1 885,214 + +2.1 885,222 - +0.6 885,222 - -0.9 885,222 - -0.7 885,222 - +0.3 885,292 + +1.5 885,315 - MIT1002_00798 0.13 -0.3 885,494 - MIT1002_00798 0.38 +2.7 885,496 + MIT1002_00798 0.38 +0.5 885,501 + MIT1002_00798 0.39 +2.1 885,505 - MIT1002_00798 0.40 -0.4 885,523 + MIT1002_00798 0.42 +1.1 885,523 + MIT1002_00798 0.42 +0.8 885,531 - MIT1002_00798 0.43 -1.4 885,574 - MIT1002_00798 0.50 +1.0 885,579 + MIT1002_00798 0.50 +1.1 885,589 + MIT1002_00798 0.52 +1.8 885,589 + MIT1002_00798 0.52 -0.5 885,597 - MIT1002_00798 0.53 -1.2 885,597 - MIT1002_00798 0.53 +1.5 885,608 + MIT1002_00798 0.54 +1.1 885,706 - MIT1002_00798 0.68 +0.6 885,810 + MIT1002_00798 0.83 -1.0 885,854 + MIT1002_00798 0.89 +0.1 885,854 + MIT1002_00798 0.89 -0.2 885,861 - -0.3 885,869 + -0.7 885,934 - -0.2 885,949 - -1.5
Or see this region's nucleotide sequence