Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00625 and MIT1002_00626 are separated by 72 nucleotides MIT1002_00626 and MIT1002_00627 are separated by 1 nucleotides MIT1002_00627 and MIT1002_00628 overlap by 4 nucleotides MIT1002_00628 and MIT1002_00629 are separated by 80 nucleotides
MIT1002_00625: MIT1002_00625 - RNA polymerase sigma factor RpoS, at 673,830 to 674,822
_00625
MIT1002_00626: MIT1002_00626 - Murein hydrolase activator NlpD precursor, at 674,895 to 675,764
_00626
MIT1002_00627: MIT1002_00627 - Inner membrane protein YqaA, at 675,766 to 676,344
_00627
MIT1002_00628: MIT1002_00628 - Protein-L-isoaspartate O-methyltransferase, at 676,341 to 676,976
_00628
MIT1002_00629: MIT1002_00629 - tRNA pseudouridine synthase D, at 677,057 to 678,142
_00629
Position (kb) 675
676
677 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 674.789 kb on - strand at 674.789 kb on - strand at 674.803 kb on + strand at 674.946 kb on - strand at 674.993 kb on - strand, within MIT1002_00626 at 675.013 kb on + strand, within MIT1002_00626 at 675.021 kb on - strand, within MIT1002_00626 at 675.025 kb on - strand, within MIT1002_00626 at 675.032 kb on - strand, within MIT1002_00626 at 675.173 kb on + strand, within MIT1002_00626 at 675.235 kb on + strand, within MIT1002_00626 at 675.258 kb on - strand, within MIT1002_00626 at 675.258 kb on - strand, within MIT1002_00626 at 675.258 kb on - strand, within MIT1002_00626 at 675.261 kb on + strand, within MIT1002_00626 at 675.261 kb on + strand, within MIT1002_00626 at 675.269 kb on - strand, within MIT1002_00626 at 675.450 kb on - strand, within MIT1002_00626 at 675.450 kb on - strand, within MIT1002_00626 at 675.584 kb on - strand, within MIT1002_00626 at 675.586 kb on + strand, within MIT1002_00626 at 675.600 kb on + strand, within MIT1002_00626 at 675.754 kb on + strand at 675.830 kb on - strand, within MIT1002_00627 at 675.832 kb on - strand, within MIT1002_00627 at 676.029 kb on + strand, within MIT1002_00627 at 676.029 kb on + strand, within MIT1002_00627 at 676.314 kb on - strand at 676.314 kb on - strand at 676.352 kb on - strand at 676.502 kb on + strand, within MIT1002_00628 at 676.655 kb on + strand, within MIT1002_00628 at 676.655 kb on + strand, within MIT1002_00628 at 676.663 kb on - strand, within MIT1002_00628 at 676.701 kb on + strand, within MIT1002_00628 at 676.715 kb on - strand, within MIT1002_00628 at 676.794 kb on - strand, within MIT1002_00628 at 676.809 kb on + strand, within MIT1002_00628 at 676.809 kb on + strand, within MIT1002_00628 at 676.817 kb on - strand, within MIT1002_00628 at 676.817 kb on - strand, within MIT1002_00628 at 676.817 kb on - strand, within MIT1002_00628 at 676.817 kb on - strand, within MIT1002_00628 at 676.843 kb on + strand, within MIT1002_00628 at 676.899 kb on + strand, within MIT1002_00628 at 677.019 kb on + strand at 677.055 kb on + strand at 677.062 kb on - strand at 677.095 kb on + strand at 677.157 kb on + strand at 677.204 kb on + strand, within MIT1002_00629 at 677.204 kb on + strand, within MIT1002_00629 at 677.220 kb on - strand, within MIT1002_00629 at 677.267 kb on + strand, within MIT1002_00629 at 677.280 kb on + strand, within MIT1002_00629 at 677.286 kb on + strand, within MIT1002_00629 at 677.318 kb on - strand, within MIT1002_00629 at 677.334 kb on + strand, within MIT1002_00629 at 677.334 kb on - strand, within MIT1002_00629 at 677.336 kb on - strand, within MIT1002_00629 at 677.344 kb on - strand, within MIT1002_00629
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6 remove 674,789 - +3.1 674,789 - +2.5 674,803 + +1.3 674,946 - -0.8 674,993 - MIT1002_00626 0.11 +0.7 675,013 + MIT1002_00626 0.14 -0.0 675,021 - MIT1002_00626 0.14 +0.0 675,025 - MIT1002_00626 0.15 +0.9 675,032 - MIT1002_00626 0.16 -0.6 675,173 + MIT1002_00626 0.32 -1.6 675,235 + MIT1002_00626 0.39 +0.8 675,258 - MIT1002_00626 0.42 -0.1 675,258 - MIT1002_00626 0.42 +1.0 675,258 - MIT1002_00626 0.42 -0.3 675,261 + MIT1002_00626 0.42 -0.5 675,261 + MIT1002_00626 0.42 -0.3 675,269 - MIT1002_00626 0.43 +0.7 675,450 - MIT1002_00626 0.64 -1.5 675,450 - MIT1002_00626 0.64 -0.8 675,584 - MIT1002_00626 0.79 -2.1 675,586 + MIT1002_00626 0.79 -0.9 675,600 + MIT1002_00626 0.81 -0.0 675,754 + -0.1 675,830 - MIT1002_00627 0.11 -2.0 675,832 - MIT1002_00627 0.11 +0.7 676,029 + MIT1002_00627 0.45 -0.7 676,029 + MIT1002_00627 0.45 -1.6 676,314 - +1.3 676,314 - -0.8 676,352 - -0.9 676,502 + MIT1002_00628 0.25 -1.5 676,655 + MIT1002_00628 0.49 -0.5 676,655 + MIT1002_00628 0.49 +0.3 676,663 - MIT1002_00628 0.51 +0.5 676,701 + MIT1002_00628 0.57 -0.7 676,715 - MIT1002_00628 0.59 -2.5 676,794 - MIT1002_00628 0.71 -1.5 676,809 + MIT1002_00628 0.74 +1.8 676,809 + MIT1002_00628 0.74 -1.4 676,817 - MIT1002_00628 0.75 +0.1 676,817 - MIT1002_00628 0.75 -0.6 676,817 - MIT1002_00628 0.75 -0.9 676,817 - MIT1002_00628 0.75 -0.0 676,843 + MIT1002_00628 0.79 +0.2 676,899 + MIT1002_00628 0.88 +0.7 677,019 + -1.4 677,055 + -1.9 677,062 - -0.3 677,095 + -0.9 677,157 + +1.2 677,204 + MIT1002_00629 0.14 -1.0 677,204 + MIT1002_00629 0.14 +0.5 677,220 - MIT1002_00629 0.15 -0.0 677,267 + MIT1002_00629 0.19 +0.5 677,280 + MIT1002_00629 0.21 -2.6 677,286 + MIT1002_00629 0.21 -0.7 677,318 - MIT1002_00629 0.24 -0.3 677,334 + MIT1002_00629 0.26 +1.4 677,334 - MIT1002_00629 0.26 +0.5 677,336 - MIT1002_00629 0.26 +0.4 677,344 - MIT1002_00629 0.26 -3.1
Or see this region's nucleotide sequence