Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00600 and MIT1002_00601 are separated by 658 nucleotides MIT1002_00601 and MIT1002_00602 are separated by 413 nucleotides MIT1002_00602 and MIT1002_00603 are separated by 27 nucleotides
MIT1002_00600: MIT1002_00600 - hypothetical protein, at 652,119 to 652,571
_00600
MIT1002_00601: MIT1002_00601 - hypothetical protein, at 653,230 to 654,849
_00601
MIT1002_00602: MIT1002_00602 - hypothetical protein, at 655,263 to 655,595
_00602
MIT1002_00603: MIT1002_00603 - hypothetical protein, at 655,623 to 656,162
_00603
Position (kb) 653
654
655 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 652.356 kb on - strand, within MIT1002_00600 at 652.358 kb on + strand, within MIT1002_00600 at 652.358 kb on + strand, within MIT1002_00600 at 652.366 kb on - strand, within MIT1002_00600 at 652.366 kb on - strand, within MIT1002_00600 at 652.366 kb on - strand, within MIT1002_00600 at 652.401 kb on - strand, within MIT1002_00600 at 652.417 kb on + strand, within MIT1002_00600 at 652.461 kb on + strand, within MIT1002_00600 at 652.469 kb on - strand, within MIT1002_00600 at 652.498 kb on + strand, within MIT1002_00600 at 652.498 kb on + strand, within MIT1002_00600 at 652.498 kb on + strand, within MIT1002_00600 at 652.506 kb on - strand, within MIT1002_00600 at 652.525 kb on - strand, within MIT1002_00600 at 652.534 kb on + strand at 652.542 kb on - strand at 652.542 kb on - strand at 652.542 kb on - strand at 652.543 kb on - strand at 652.546 kb on + strand at 652.593 kb on - strand at 652.658 kb on + strand at 652.659 kb on + strand at 652.666 kb on - strand at 652.666 kb on - strand at 652.680 kb on + strand at 652.714 kb on + strand at 652.714 kb on + strand at 652.720 kb on - strand at 652.720 kb on - strand at 652.737 kb on - strand at 652.737 kb on - strand at 652.767 kb on + strand at 652.768 kb on + strand at 652.769 kb on - strand at 652.776 kb on - strand at 652.790 kb on + strand at 652.827 kb on + strand at 652.918 kb on + strand at 652.919 kb on - strand at 652.934 kb on + strand at 652.934 kb on + strand at 652.934 kb on + strand at 652.934 kb on + strand at 652.934 kb on + strand at 652.934 kb on + strand at 652.934 kb on + strand at 652.942 kb on - strand at 652.942 kb on - strand at 652.942 kb on - strand at 652.942 kb on - strand at 652.942 kb on - strand at 652.942 kb on - strand at 652.942 kb on - strand at 652.942 kb on - strand at 652.942 kb on - strand at 652.946 kb on + strand at 652.946 kb on + strand at 652.954 kb on - strand at 652.969 kb on - strand at 652.982 kb on + strand at 653.032 kb on + strand at 653.227 kb on - strand at 653.252 kb on - strand at 653.288 kb on + strand at 653.314 kb on + strand at 653.319 kb on + strand at 653.397 kb on + strand, within MIT1002_00601 at 653.397 kb on + strand, within MIT1002_00601 at 653.405 kb on - strand, within MIT1002_00601 at 653.405 kb on - strand, within MIT1002_00601 at 653.405 kb on - strand, within MIT1002_00601 at 653.491 kb on + strand, within MIT1002_00601 at 653.501 kb on + strand, within MIT1002_00601 at 653.501 kb on + strand, within MIT1002_00601 at 653.501 kb on + strand, within MIT1002_00601 at 653.501 kb on + strand, within MIT1002_00601 at 653.501 kb on + strand, within MIT1002_00601 at 653.501 kb on + strand, within MIT1002_00601 at 653.501 kb on + strand, within MIT1002_00601 at 653.504 kb on - strand, within MIT1002_00601 at 653.509 kb on - strand, within MIT1002_00601 at 653.509 kb on - strand, within MIT1002_00601 at 653.509 kb on - strand, within MIT1002_00601 at 653.509 kb on - strand, within MIT1002_00601 at 653.509 kb on - strand, within MIT1002_00601 at 653.556 kb on + strand, within MIT1002_00601 at 653.564 kb on + strand, within MIT1002_00601 at 653.564 kb on - strand, within MIT1002_00601 at 653.564 kb on - strand, within MIT1002_00601 at 653.585 kb on + strand, within MIT1002_00601 at 653.760 kb on - strand, within MIT1002_00601 at 653.779 kb on + strand, within MIT1002_00601 at 653.788 kb on + strand, within MIT1002_00601 at 653.796 kb on - strand, within MIT1002_00601 at 653.868 kb on - strand, within MIT1002_00601 at 653.874 kb on + strand, within MIT1002_00601 at 653.874 kb on + strand, within MIT1002_00601 at 653.883 kb on + strand, within MIT1002_00601 at 653.883 kb on + strand, within MIT1002_00601 at 653.927 kb on - strand, within MIT1002_00601 at 653.944 kb on - strand, within MIT1002_00601 at 653.996 kb on + strand, within MIT1002_00601 at 653.997 kb on + strand, within MIT1002_00601 at 654.004 kb on - strand, within MIT1002_00601 at 654.004 kb on - strand, within MIT1002_00601 at 654.034 kb on - strand, within MIT1002_00601 at 654.035 kb on + strand, within MIT1002_00601 at 654.091 kb on + strand, within MIT1002_00601 at 654.164 kb on - strand, within MIT1002_00601 at 654.165 kb on + strand, within MIT1002_00601 at 654.225 kb on - strand, within MIT1002_00601 at 654.242 kb on + strand, within MIT1002_00601 at 654.315 kb on - strand, within MIT1002_00601 at 654.350 kb on - strand, within MIT1002_00601 at 654.378 kb on - strand, within MIT1002_00601 at 654.385 kb on + strand, within MIT1002_00601 at 654.385 kb on + strand, within MIT1002_00601 at 654.385 kb on + strand, within MIT1002_00601 at 654.385 kb on + strand, within MIT1002_00601 at 654.393 kb on - strand, within MIT1002_00601 at 654.393 kb on - strand, within MIT1002_00601 at 654.400 kb on + strand, within MIT1002_00601 at 654.400 kb on - strand, within MIT1002_00601 at 654.403 kb on - strand, within MIT1002_00601 at 654.413 kb on + strand, within MIT1002_00601 at 654.469 kb on + strand, within MIT1002_00601 at 654.476 kb on - strand, within MIT1002_00601 at 654.478 kb on + strand, within MIT1002_00601 at 654.493 kb on - strand, within MIT1002_00601 at 654.543 kb on + strand, within MIT1002_00601 at 654.546 kb on - strand, within MIT1002_00601 at 654.548 kb on + strand, within MIT1002_00601 at 654.571 kb on + strand, within MIT1002_00601 at 654.615 kb on + strand, within MIT1002_00601 at 654.615 kb on + strand, within MIT1002_00601 at 654.615 kb on + strand, within MIT1002_00601 at 654.623 kb on - strand, within MIT1002_00601 at 654.682 kb on - strand, within MIT1002_00601 at 654.693 kb on - strand at 654.693 kb on - strand at 654.711 kb on - strand at 654.717 kb on + strand at 654.720 kb on + strand at 654.730 kb on + strand at 654.738 kb on - strand at 654.796 kb on + strand at 654.919 kb on + strand at 655.014 kb on + strand at 655.036 kb on - strand at 655.036 kb on - strand at 655.054 kb on + strand at 655.102 kb on - strand at 655.102 kb on - strand at 655.124 kb on + strand at 655.124 kb on + strand at 655.124 kb on + strand at 655.124 kb on + strand at 655.153 kb on + strand at 655.224 kb on + strand at 655.228 kb on + strand at 655.232 kb on - strand at 655.232 kb on - strand at 655.244 kb on - strand at 655.247 kb on + strand at 655.253 kb on + strand at 655.253 kb on + strand at 655.253 kb on + strand at 655.253 kb on + strand at 655.261 kb on - strand at 655.261 kb on - strand at 655.281 kb on - strand at 655.352 kb on + strand, within MIT1002_00602 at 655.574 kb on - strand at 655.629 kb on + strand at 655.675 kb on + strand at 655.675 kb on + strand at 655.675 kb on + strand at 655.683 kb on - strand, within MIT1002_00603 at 655.730 kb on + strand, within MIT1002_00603 at 655.738 kb on - strand, within MIT1002_00603 at 655.754 kb on + strand, within MIT1002_00603 at 655.754 kb on + strand, within MIT1002_00603 at 655.754 kb on + strand, within MIT1002_00603 at 655.771 kb on + strand, within MIT1002_00603 at 655.774 kb on - strand, within MIT1002_00603 at 655.827 kb on + strand, within MIT1002_00603 at 655.840 kb on + strand, within MIT1002_00603
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6 remove 652,356 - MIT1002_00600 0.52 +0.3 652,358 + MIT1002_00600 0.53 +0.4 652,358 + MIT1002_00600 0.53 +1.7 652,366 - MIT1002_00600 0.55 +0.6 652,366 - MIT1002_00600 0.55 +1.5 652,366 - MIT1002_00600 0.55 +0.6 652,401 - MIT1002_00600 0.62 -0.1 652,417 + MIT1002_00600 0.66 -0.1 652,461 + MIT1002_00600 0.75 -0.5 652,469 - MIT1002_00600 0.77 -2.6 652,498 + MIT1002_00600 0.84 -1.9 652,498 + MIT1002_00600 0.84 -0.9 652,498 + MIT1002_00600 0.84 +1.4 652,506 - MIT1002_00600 0.85 -0.2 652,525 - MIT1002_00600 0.90 +0.3 652,534 + -0.2 652,542 - +0.8 652,542 - +0.5 652,542 - +0.1 652,543 - -0.7 652,546 + -1.1 652,593 - +0.4 652,658 + -1.6 652,659 + +0.4 652,666 - +1.8 652,666 - +1.6 652,680 + -2.4 652,714 + -0.6 652,714 + -1.5 652,720 - -0.6 652,720 - -1.5 652,737 - +1.7 652,737 - -1.1 652,767 + -0.3 652,768 + +0.8 652,769 - +1.1 652,776 - +0.3 652,790 + +0.8 652,827 + +1.7 652,918 + -0.4 652,919 - -1.4 652,934 + +0.5 652,934 + -2.7 652,934 + +2.1 652,934 + -0.7 652,934 + +0.5 652,934 + +0.1 652,934 + +0.4 652,942 - -2.1 652,942 - -0.5 652,942 - -0.1 652,942 - -1.2 652,942 - +0.2 652,942 - -2.4 652,942 - +2.0 652,942 - +1.6 652,942 - -0.3 652,946 + +1.6 652,946 + -1.0 652,954 - -1.1 652,969 - +1.1 652,982 + +0.5 653,032 + +0.4 653,227 - +1.7 653,252 - -2.1 653,288 + +0.2 653,314 + +0.1 653,319 + +1.0 653,397 + MIT1002_00601 0.10 +0.6 653,397 + MIT1002_00601 0.10 -0.8 653,405 - MIT1002_00601 0.11 -0.5 653,405 - MIT1002_00601 0.11 +0.1 653,405 - MIT1002_00601 0.11 +0.5 653,491 + MIT1002_00601 0.16 +1.4 653,501 + MIT1002_00601 0.17 -0.2 653,501 + MIT1002_00601 0.17 -1.6 653,501 + MIT1002_00601 0.17 +1.6 653,501 + MIT1002_00601 0.17 -1.5 653,501 + MIT1002_00601 0.17 -0.6 653,501 + MIT1002_00601 0.17 -1.8 653,501 + MIT1002_00601 0.17 -2.0 653,504 - MIT1002_00601 0.17 -3.4 653,509 - MIT1002_00601 0.17 -0.3 653,509 - MIT1002_00601 0.17 -0.3 653,509 - MIT1002_00601 0.17 +1.1 653,509 - MIT1002_00601 0.17 -1.2 653,509 - MIT1002_00601 0.17 +1.9 653,556 + MIT1002_00601 0.20 +1.1 653,564 + MIT1002_00601 0.21 -0.0 653,564 - MIT1002_00601 0.21 -1.3 653,564 - MIT1002_00601 0.21 +1.8 653,585 + MIT1002_00601 0.22 +1.3 653,760 - MIT1002_00601 0.33 -1.1 653,779 + MIT1002_00601 0.34 -1.4 653,788 + MIT1002_00601 0.34 -0.9 653,796 - MIT1002_00601 0.35 -0.5 653,868 - MIT1002_00601 0.39 +1.2 653,874 + MIT1002_00601 0.40 -0.8 653,874 + MIT1002_00601 0.40 +0.7 653,883 + MIT1002_00601 0.40 +0.3 653,883 + MIT1002_00601 0.40 +2.4 653,927 - MIT1002_00601 0.43 -0.8 653,944 - MIT1002_00601 0.44 +0.6 653,996 + MIT1002_00601 0.47 +1.2 653,997 + MIT1002_00601 0.47 +0.3 654,004 - MIT1002_00601 0.48 -0.4 654,004 - MIT1002_00601 0.48 -0.7 654,034 - MIT1002_00601 0.50 -1.5 654,035 + MIT1002_00601 0.50 +1.9 654,091 + MIT1002_00601 0.53 +1.5 654,164 - MIT1002_00601 0.58 +3.7 654,165 + MIT1002_00601 0.58 +1.1 654,225 - MIT1002_00601 0.61 +0.7 654,242 + MIT1002_00601 0.62 -0.8 654,315 - MIT1002_00601 0.67 +0.2 654,350 - MIT1002_00601 0.69 +1.1 654,378 - MIT1002_00601 0.71 -0.4 654,385 + MIT1002_00601 0.71 +0.8 654,385 + MIT1002_00601 0.71 +1.7 654,385 + MIT1002_00601 0.71 +0.4 654,385 + MIT1002_00601 0.71 -0.4 654,393 - MIT1002_00601 0.72 +0.3 654,393 - MIT1002_00601 0.72 +0.4 654,400 + MIT1002_00601 0.72 +1.8 654,400 - MIT1002_00601 0.72 +2.3 654,403 - MIT1002_00601 0.72 -1.2 654,413 + MIT1002_00601 0.73 +0.8 654,469 + MIT1002_00601 0.76 +0.1 654,476 - MIT1002_00601 0.77 +1.0 654,478 + MIT1002_00601 0.77 +0.8 654,493 - MIT1002_00601 0.78 +0.1 654,543 + MIT1002_00601 0.81 -0.1 654,546 - MIT1002_00601 0.81 -1.9 654,548 + MIT1002_00601 0.81 +1.6 654,571 + MIT1002_00601 0.83 -1.1 654,615 + MIT1002_00601 0.85 +0.0 654,615 + MIT1002_00601 0.85 +0.5 654,615 + MIT1002_00601 0.85 +2.4 654,623 - MIT1002_00601 0.86 -1.5 654,682 - MIT1002_00601 0.90 -0.8 654,693 - +1.2 654,693 - -1.5 654,711 - +1.0 654,717 + +0.1 654,720 + -0.6 654,730 + -0.3 654,738 - +0.4 654,796 + +0.3 654,919 + -0.1 655,014 + -1.3 655,036 - +0.1 655,036 - +2.7 655,054 + +1.7 655,102 - -0.2 655,102 - +1.0 655,124 + -1.6 655,124 + +0.1 655,124 + +1.5 655,124 + -0.7 655,153 + -1.2 655,224 + +0.2 655,228 + +0.5 655,232 - -0.1 655,232 - -0.4 655,244 - -2.2 655,247 + +1.2 655,253 + +0.2 655,253 + +1.5 655,253 + -0.9 655,253 + +0.5 655,261 - -0.0 655,261 - -0.1 655,281 - +2.2 655,352 + MIT1002_00602 0.27 +0.6 655,574 - +0.5 655,629 + -0.6 655,675 + -2.2 655,675 + -0.6 655,675 + -1.3 655,683 - MIT1002_00603 0.11 -0.3 655,730 + MIT1002_00603 0.20 +2.7 655,738 - MIT1002_00603 0.21 +0.4 655,754 + MIT1002_00603 0.24 -2.6 655,754 + MIT1002_00603 0.24 -0.8 655,754 + MIT1002_00603 0.24 -0.7 655,771 + MIT1002_00603 0.27 -0.2 655,774 - MIT1002_00603 0.28 +0.7 655,827 + MIT1002_00603 0.38 -2.1 655,840 + MIT1002_00603 0.40 +0.4
Or see this region's nucleotide sequence