Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00542 and MIT1002_00543 are separated by 18 nucleotides MIT1002_00543 and MIT1002_00544 are separated by 190 nucleotides
MIT1002_00542: MIT1002_00542 - hypothetical protein, at 591,088 to 592,590
_00542
MIT1002_00543: MIT1002_00543 - N-acetylmuramic acid 6-phosphate etherase, at 592,609 to 593,622
_00543
MIT1002_00544: MIT1002_00544 - Alanine racemase, at 593,813 to 594,889
_00544
Position (kb) 592
593
594 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 591.624 kb on + strand, within MIT1002_00542 at 591.636 kb on + strand, within MIT1002_00542 at 591.662 kb on - strand, within MIT1002_00542 at 591.697 kb on - strand, within MIT1002_00542 at 591.697 kb on - strand, within MIT1002_00542 at 591.704 kb on - strand, within MIT1002_00542 at 591.720 kb on + strand, within MIT1002_00542 at 591.779 kb on - strand, within MIT1002_00542 at 591.781 kb on - strand, within MIT1002_00542 at 591.789 kb on - strand, within MIT1002_00542 at 591.842 kb on - strand, within MIT1002_00542 at 591.864 kb on + strand, within MIT1002_00542 at 591.872 kb on - strand, within MIT1002_00542 at 591.882 kb on - strand, within MIT1002_00542 at 591.967 kb on - strand, within MIT1002_00542 at 591.981 kb on + strand, within MIT1002_00542 at 591.989 kb on - strand, within MIT1002_00542 at 592.006 kb on + strand, within MIT1002_00542 at 592.038 kb on - strand, within MIT1002_00542 at 592.057 kb on - strand, within MIT1002_00542 at 592.128 kb on + strand, within MIT1002_00542 at 592.143 kb on + strand, within MIT1002_00542 at 592.151 kb on - strand, within MIT1002_00542 at 592.151 kb on - strand, within MIT1002_00542 at 592.151 kb on - strand, within MIT1002_00542 at 592.161 kb on - strand, within MIT1002_00542 at 592.196 kb on + strand, within MIT1002_00542 at 592.228 kb on - strand, within MIT1002_00542 at 592.253 kb on - strand, within MIT1002_00542 at 592.253 kb on - strand, within MIT1002_00542 at 592.253 kb on - strand, within MIT1002_00542 at 592.269 kb on + strand, within MIT1002_00542 at 592.342 kb on - strand, within MIT1002_00542 at 592.365 kb on - strand, within MIT1002_00542 at 592.380 kb on + strand, within MIT1002_00542 at 592.395 kb on - strand, within MIT1002_00542 at 592.413 kb on + strand, within MIT1002_00542 at 592.430 kb on - strand, within MIT1002_00542 at 592.506 kb on + strand at 592.592 kb on + strand at 592.600 kb on - strand at 592.642 kb on - strand at 592.861 kb on - strand, within MIT1002_00543 at 592.913 kb on + strand, within MIT1002_00543 at 592.955 kb on - strand, within MIT1002_00543 at 592.966 kb on + strand, within MIT1002_00543 at 593.068 kb on + strand, within MIT1002_00543 at 593.084 kb on - strand, within MIT1002_00543 at 593.084 kb on - strand, within MIT1002_00543 at 593.084 kb on - strand, within MIT1002_00543 at 593.084 kb on - strand, within MIT1002_00543 at 593.084 kb on - strand, within MIT1002_00543 at 593.084 kb on - strand, within MIT1002_00543 at 593.108 kb on + strand, within MIT1002_00543 at 593.118 kb on + strand, within MIT1002_00543 at 593.126 kb on - strand, within MIT1002_00543 at 593.126 kb on - strand, within MIT1002_00543 at 593.139 kb on + strand, within MIT1002_00543 at 593.157 kb on - strand, within MIT1002_00543 at 593.175 kb on + strand, within MIT1002_00543 at 593.227 kb on - strand, within MIT1002_00543 at 593.252 kb on + strand, within MIT1002_00543 at 593.538 kb on - strand at 593.550 kb on + strand at 593.592 kb on + strand at 593.661 kb on + strand at 593.668 kb on + strand at 593.669 kb on - strand at 593.676 kb on - strand at 593.731 kb on - strand at 593.736 kb on + strand at 593.736 kb on + strand at 594.613 kb on + strand, within MIT1002_00544
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6 remove 591,624 + MIT1002_00542 0.36 +0.6 591,636 + MIT1002_00542 0.36 +0.3 591,662 - MIT1002_00542 0.38 -0.4 591,697 - MIT1002_00542 0.41 -1.7 591,697 - MIT1002_00542 0.41 +2.3 591,704 - MIT1002_00542 0.41 +1.3 591,720 + MIT1002_00542 0.42 -0.5 591,779 - MIT1002_00542 0.46 -0.1 591,781 - MIT1002_00542 0.46 -0.1 591,789 - MIT1002_00542 0.47 +0.4 591,842 - MIT1002_00542 0.50 -0.7 591,864 + MIT1002_00542 0.52 +0.8 591,872 - MIT1002_00542 0.52 +1.3 591,882 - MIT1002_00542 0.53 -0.1 591,967 - MIT1002_00542 0.58 -0.2 591,981 + MIT1002_00542 0.59 +0.8 591,989 - MIT1002_00542 0.60 +0.5 592,006 + MIT1002_00542 0.61 -0.6 592,038 - MIT1002_00542 0.63 -0.6 592,057 - MIT1002_00542 0.64 -0.2 592,128 + MIT1002_00542 0.69 +1.0 592,143 + MIT1002_00542 0.70 +1.1 592,151 - MIT1002_00542 0.71 +0.8 592,151 - MIT1002_00542 0.71 -0.7 592,151 - MIT1002_00542 0.71 -2.1 592,161 - MIT1002_00542 0.71 -1.5 592,196 + MIT1002_00542 0.74 -1.5 592,228 - MIT1002_00542 0.76 +0.7 592,253 - MIT1002_00542 0.78 -2.7 592,253 - MIT1002_00542 0.78 +0.9 592,253 - MIT1002_00542 0.78 +2.3 592,269 + MIT1002_00542 0.79 +2.1 592,342 - MIT1002_00542 0.83 +0.8 592,365 - MIT1002_00542 0.85 +1.4 592,380 + MIT1002_00542 0.86 +0.0 592,395 - MIT1002_00542 0.87 +0.8 592,413 + MIT1002_00542 0.88 -1.9 592,430 - MIT1002_00542 0.89 +0.8 592,506 + +0.9 592,592 + -1.4 592,600 - -2.0 592,642 - -1.7 592,861 - MIT1002_00543 0.25 -2.3 592,913 + MIT1002_00543 0.30 -0.4 592,955 - MIT1002_00543 0.34 +0.4 592,966 + MIT1002_00543 0.35 -1.5 593,068 + MIT1002_00543 0.45 +0.4 593,084 - MIT1002_00543 0.47 -2.3 593,084 - MIT1002_00543 0.47 -1.7 593,084 - MIT1002_00543 0.47 -0.7 593,084 - MIT1002_00543 0.47 -0.6 593,084 - MIT1002_00543 0.47 -1.4 593,084 - MIT1002_00543 0.47 +0.8 593,108 + MIT1002_00543 0.49 -2.2 593,118 + MIT1002_00543 0.50 -1.5 593,126 - MIT1002_00543 0.51 -1.3 593,126 - MIT1002_00543 0.51 -0.1 593,139 + MIT1002_00543 0.52 -1.5 593,157 - MIT1002_00543 0.54 -0.8 593,175 + MIT1002_00543 0.56 -1.5 593,227 - MIT1002_00543 0.61 -1.8 593,252 + MIT1002_00543 0.63 -1.0 593,538 - +1.7 593,550 + -2.1 593,592 + -0.5 593,661 + -3.1 593,668 + -1.4 593,669 - +0.4 593,676 - +1.2 593,731 - +1.1 593,736 + -2.0 593,736 + +0.5 594,613 + MIT1002_00544 0.74 +0.5
Or see this region's nucleotide sequence