Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00539

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00538 and MIT1002_00539 are separated by 76 nucleotidesMIT1002_00539 and MIT1002_00540 are separated by 238 nucleotides MIT1002_00538: MIT1002_00538 - Gamma-glutamyltranspeptidase precursor, at 584,410 to 586,128 _00538 MIT1002_00539: MIT1002_00539 - Malate-2H(+)/Na(+)-lactate antiporter, at 586,205 to 587,581 _00539 MIT1002_00540: MIT1002_00540 - Beta-hexosaminidase A precursor, at 587,820 to 589,751 _00540 Position (kb) 586 587 588Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 585.208 kb on - strand, within MIT1002_00538at 585.252 kb on + strand, within MIT1002_00538at 585.266 kb on - strand, within MIT1002_00538at 585.276 kb on - strand, within MIT1002_00538at 585.291 kb on + strand, within MIT1002_00538at 585.291 kb on + strand, within MIT1002_00538at 585.291 kb on + strand, within MIT1002_00538at 585.299 kb on - strand, within MIT1002_00538at 585.299 kb on - strand, within MIT1002_00538at 585.299 kb on - strand, within MIT1002_00538at 585.328 kb on + strand, within MIT1002_00538at 585.374 kb on + strand, within MIT1002_00538at 585.431 kb on + strand, within MIT1002_00538at 585.497 kb on + strand, within MIT1002_00538at 585.497 kb on + strand, within MIT1002_00538at 585.497 kb on + strand, within MIT1002_00538at 585.497 kb on + strand, within MIT1002_00538at 585.497 kb on + strand, within MIT1002_00538at 585.497 kb on + strand, within MIT1002_00538at 585.505 kb on - strand, within MIT1002_00538at 585.505 kb on - strand, within MIT1002_00538at 585.597 kb on + strand, within MIT1002_00538at 585.605 kb on - strand, within MIT1002_00538at 585.637 kb on - strand, within MIT1002_00538at 585.882 kb on + strand, within MIT1002_00538at 585.982 kb on - strandat 585.993 kb on - strandat 586.010 kb on + strandat 586.050 kb on + strandat 586.103 kb on - strandat 586.152 kb on + strandat 586.153 kb on + strandat 586.212 kb on + strandat 586.350 kb on + strand, within MIT1002_00539at 586.366 kb on - strand, within MIT1002_00539at 586.409 kb on + strand, within MIT1002_00539at 586.422 kb on - strand, within MIT1002_00539at 586.422 kb on - strand, within MIT1002_00539at 586.576 kb on - strand, within MIT1002_00539at 586.576 kb on - strand, within MIT1002_00539at 586.586 kb on - strand, within MIT1002_00539at 586.588 kb on + strand, within MIT1002_00539at 586.588 kb on + strand, within MIT1002_00539at 586.588 kb on + strand, within MIT1002_00539at 586.588 kb on + strand, within MIT1002_00539at 586.596 kb on - strand, within MIT1002_00539at 586.596 kb on - strand, within MIT1002_00539at 586.596 kb on - strand, within MIT1002_00539at 586.616 kb on + strand, within MIT1002_00539at 586.696 kb on - strand, within MIT1002_00539at 586.722 kb on - strand, within MIT1002_00539at 586.733 kb on + strand, within MIT1002_00539at 586.733 kb on + strand, within MIT1002_00539at 586.733 kb on + strand, within MIT1002_00539at 586.733 kb on + strand, within MIT1002_00539at 586.741 kb on - strand, within MIT1002_00539at 586.797 kb on + strand, within MIT1002_00539at 586.809 kb on + strand, within MIT1002_00539at 586.894 kb on + strand, within MIT1002_00539at 586.898 kb on - strand, within MIT1002_00539at 586.931 kb on + strand, within MIT1002_00539at 586.931 kb on + strand, within MIT1002_00539at 586.931 kb on + strand, within MIT1002_00539at 586.956 kb on + strand, within MIT1002_00539at 586.976 kb on + strand, within MIT1002_00539at 586.976 kb on + strand, within MIT1002_00539at 586.976 kb on + strand, within MIT1002_00539at 586.976 kb on + strand, within MIT1002_00539at 586.984 kb on - strand, within MIT1002_00539at 586.984 kb on - strand, within MIT1002_00539at 586.984 kb on - strand, within MIT1002_00539at 586.984 kb on - strand, within MIT1002_00539at 586.984 kb on - strand, within MIT1002_00539at 587.065 kb on + strand, within MIT1002_00539at 587.079 kb on - strand, within MIT1002_00539at 587.082 kb on - strand, within MIT1002_00539at 587.135 kb on + strand, within MIT1002_00539at 587.135 kb on + strand, within MIT1002_00539at 587.222 kb on + strand, within MIT1002_00539at 587.270 kb on + strand, within MIT1002_00539at 587.271 kb on - strand, within MIT1002_00539at 587.275 kb on + strand, within MIT1002_00539at 587.306 kb on - strand, within MIT1002_00539at 587.340 kb on - strand, within MIT1002_00539at 587.345 kb on - strand, within MIT1002_00539at 587.354 kb on + strand, within MIT1002_00539at 587.362 kb on - strand, within MIT1002_00539at 587.362 kb on - strand, within MIT1002_00539at 587.362 kb on - strand, within MIT1002_00539at 587.362 kb on - strand, within MIT1002_00539at 587.362 kb on - strand, within MIT1002_00539at 587.364 kb on - strand, within MIT1002_00539at 587.432 kb on - strand, within MIT1002_00539at 587.437 kb on + strand, within MIT1002_00539at 587.610 kb on + strandat 587.618 kb on - strandat 587.637 kb on - strandat 587.655 kb on - strandat 587.705 kb on - strandat 587.742 kb on + strandat 587.742 kb on + strandat 587.750 kb on - strandat 587.754 kb on + strandat 587.881 kb on - strandat 587.881 kb on - strandat 587.923 kb on + strandat 587.923 kb on + strandat 587.938 kb on - strandat 588.052 kb on + strand, within MIT1002_00540at 588.155 kb on + strand, within MIT1002_00540at 588.163 kb on - strand, within MIT1002_00540at 588.163 kb on - strand, within MIT1002_00540at 588.163 kb on - strand, within MIT1002_00540at 588.163 kb on - strand, within MIT1002_00540at 588.163 kb on - strand, within MIT1002_00540at 588.163 kb on - strand, within MIT1002_00540at 588.222 kb on + strand, within MIT1002_00540at 588.235 kb on - strand, within MIT1002_00540at 588.247 kb on + strand, within MIT1002_00540at 588.247 kb on + strand, within MIT1002_00540at 588.295 kb on + strand, within MIT1002_00540at 588.382 kb on - strand, within MIT1002_00540at 588.382 kb on - strand, within MIT1002_00540at 588.507 kb on + strand, within MIT1002_00540at 588.507 kb on + strand, within MIT1002_00540at 588.507 kb on + strand, within MIT1002_00540at 588.507 kb on + strand, within MIT1002_00540at 588.507 kb on + strand, within MIT1002_00540at 588.507 kb on + strand, within MIT1002_00540at 588.508 kb on - strand, within MIT1002_00540at 588.515 kb on - strand, within MIT1002_00540at 588.515 kb on - strand, within MIT1002_00540at 588.528 kb on - strand, within MIT1002_00540at 588.558 kb on - strand, within MIT1002_00540

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6
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585,208 - MIT1002_00538 0.46 +0.4
585,252 + MIT1002_00538 0.49 +0.3
585,266 - MIT1002_00538 0.50 +1.1
585,276 - MIT1002_00538 0.50 -1.0
585,291 + MIT1002_00538 0.51 -2.8
585,291 + MIT1002_00538 0.51 +0.8
585,291 + MIT1002_00538 0.51 +0.5
585,299 - MIT1002_00538 0.52 -1.1
585,299 - MIT1002_00538 0.52 -0.9
585,299 - MIT1002_00538 0.52 +1.5
585,328 + MIT1002_00538 0.53 -0.4
585,374 + MIT1002_00538 0.56 -0.5
585,431 + MIT1002_00538 0.59 +1.0
585,497 + MIT1002_00538 0.63 +0.8
585,497 + MIT1002_00538 0.63 +1.6
585,497 + MIT1002_00538 0.63 -0.9
585,497 + MIT1002_00538 0.63 -0.9
585,497 + MIT1002_00538 0.63 +0.6
585,497 + MIT1002_00538 0.63 +1.2
585,505 - MIT1002_00538 0.64 +0.2
585,505 - MIT1002_00538 0.64 -0.8
585,597 + MIT1002_00538 0.69 -1.8
585,605 - MIT1002_00538 0.70 -1.9
585,637 - MIT1002_00538 0.71 -2.1
585,882 + MIT1002_00538 0.86 +0.2
585,982 - +0.1
585,993 - -1.4
586,010 + -2.4
586,050 + -0.7
586,103 - -0.6
586,152 + -0.2
586,153 + -0.3
586,212 + +0.2
586,350 + MIT1002_00539 0.11 -1.4
586,366 - MIT1002_00539 0.12 +0.4
586,409 + MIT1002_00539 0.15 -0.5
586,422 - MIT1002_00539 0.16 +0.6
586,422 - MIT1002_00539 0.16 -2.6
586,576 - MIT1002_00539 0.27 -0.9
586,576 - MIT1002_00539 0.27 +1.4
586,586 - MIT1002_00539 0.28 +0.5
586,588 + MIT1002_00539 0.28 +1.1
586,588 + MIT1002_00539 0.28 -1.2
586,588 + MIT1002_00539 0.28 -2.5
586,588 + MIT1002_00539 0.28 -0.7
586,596 - MIT1002_00539 0.28 +1.0
586,596 - MIT1002_00539 0.28 -0.2
586,596 - MIT1002_00539 0.28 +0.6
586,616 + MIT1002_00539 0.30 +0.8
586,696 - MIT1002_00539 0.36 -0.1
586,722 - MIT1002_00539 0.38 -1.1
586,733 + MIT1002_00539 0.38 +0.5
586,733 + MIT1002_00539 0.38 +4.8
586,733 + MIT1002_00539 0.38 +1.8
586,733 + MIT1002_00539 0.38 +1.5
586,741 - MIT1002_00539 0.39 -0.4
586,797 + MIT1002_00539 0.43 +1.3
586,809 + MIT1002_00539 0.44 -1.6
586,894 + MIT1002_00539 0.50 -1.4
586,898 - MIT1002_00539 0.50 -1.0
586,931 + MIT1002_00539 0.53 -0.5
586,931 + MIT1002_00539 0.53 -2.2
586,931 + MIT1002_00539 0.53 -0.7
586,956 + MIT1002_00539 0.55 -0.8
586,976 + MIT1002_00539 0.56 -0.8
586,976 + MIT1002_00539 0.56 -1.1
586,976 + MIT1002_00539 0.56 -0.7
586,976 + MIT1002_00539 0.56 +1.5
586,984 - MIT1002_00539 0.57 +2.7
586,984 - MIT1002_00539 0.57 -2.2
586,984 - MIT1002_00539 0.57 +1.4
586,984 - MIT1002_00539 0.57 -3.3
586,984 - MIT1002_00539 0.57 -0.1
587,065 + MIT1002_00539 0.62 -2.5
587,079 - MIT1002_00539 0.63 -1.7
587,082 - MIT1002_00539 0.64 +1.5
587,135 + MIT1002_00539 0.68 -0.9
587,135 + MIT1002_00539 0.68 -0.6
587,222 + MIT1002_00539 0.74 -1.0
587,270 + MIT1002_00539 0.77 -0.5
587,271 - MIT1002_00539 0.77 -0.2
587,275 + MIT1002_00539 0.78 -1.1
587,306 - MIT1002_00539 0.80 +0.4
587,340 - MIT1002_00539 0.82 -0.6
587,345 - MIT1002_00539 0.83 -2.3
587,354 + MIT1002_00539 0.83 -0.5
587,362 - MIT1002_00539 0.84 -1.8
587,362 - MIT1002_00539 0.84 +1.4
587,362 - MIT1002_00539 0.84 +1.9
587,362 - MIT1002_00539 0.84 -1.7
587,362 - MIT1002_00539 0.84 -1.0
587,364 - MIT1002_00539 0.84 +2.6
587,432 - MIT1002_00539 0.89 +0.5
587,437 + MIT1002_00539 0.89 -0.9
587,610 + -1.8
587,618 - -1.5
587,637 - -1.5
587,655 - +0.5
587,705 - +0.5
587,742 + -1.7
587,742 + +0.2
587,750 - +0.2
587,754 + +1.6
587,881 - -0.2
587,881 - -1.2
587,923 + -1.9
587,923 + -0.9
587,938 - -0.7
588,052 + MIT1002_00540 0.12 +1.0
588,155 + MIT1002_00540 0.17 -0.2
588,163 - MIT1002_00540 0.18 -2.2
588,163 - MIT1002_00540 0.18 +0.5
588,163 - MIT1002_00540 0.18 -1.2
588,163 - MIT1002_00540 0.18 -0.9
588,163 - MIT1002_00540 0.18 -0.5
588,163 - MIT1002_00540 0.18 -1.0
588,222 + MIT1002_00540 0.21 -1.4
588,235 - MIT1002_00540 0.21 +0.9
588,247 + MIT1002_00540 0.22 -1.3
588,247 + MIT1002_00540 0.22 -1.5
588,295 + MIT1002_00540 0.25 +0.0
588,382 - MIT1002_00540 0.29 -1.1
588,382 - MIT1002_00540 0.29 -0.9
588,507 + MIT1002_00540 0.36 +0.8
588,507 + MIT1002_00540 0.36 +1.9
588,507 + MIT1002_00540 0.36 -2.1
588,507 + MIT1002_00540 0.36 -2.1
588,507 + MIT1002_00540 0.36 -1.9
588,507 + MIT1002_00540 0.36 +1.7
588,508 - MIT1002_00540 0.36 -1.0
588,515 - MIT1002_00540 0.36 +0.9
588,515 - MIT1002_00540 0.36 +1.0
588,528 - MIT1002_00540 0.37 +2.3
588,558 - MIT1002_00540 0.38 +1.2

Or see this region's nucleotide sequence