Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00501 and MIT1002_00502 are separated by 233 nucleotides MIT1002_00502 and MIT1002_00503 are separated by 273 nucleotides MIT1002_00503 and MIT1002_00504 overlap by 1 nucleotides MIT1002_00504 and MIT1002_00505 are separated by 80 nucleotides
MIT1002_00501: MIT1002_00501 - hypothetical protein, at 545,598 to 546,059
_00501
MIT1002_00502: MIT1002_00502 - Protein of unknown function, DUF, at 546,293 to 546,670
_00502
MIT1002_00503: MIT1002_00503 - Acetolactate synthase isozyme 3 large subunit, at 546,944 to 548,662
_00503
MIT1002_00504: MIT1002_00504 - Acetolactate synthase isozyme 3 small subunit, at 548,662 to 549,159
_00504
MIT1002_00505: MIT1002_00505 - hypothetical protein, at 549,240 to 550,301
_00505
Position (kb)
546
547
548
549 Strain fitness (log2 ratio)
-9
-8
-7
-6
-5
-4
-3
-2
-1
0
1
2 at 545.993 kb on + strand, within MIT1002_00501 at 545.998 kb on - strand, within MIT1002_00501 at 546.036 kb on - strand at 546.106 kb on + strand at 546.179 kb on + strand at 546.285 kb on + strand at 546.286 kb on + strand at 546.287 kb on + strand at 546.295 kb on - strand at 546.295 kb on - strand at 546.402 kb on - strand, within MIT1002_00502 at 546.417 kb on - strand, within MIT1002_00502 at 546.510 kb on + strand, within MIT1002_00502 at 546.510 kb on - strand, within MIT1002_00502 at 546.523 kb on + strand, within MIT1002_00502 at 546.610 kb on - strand, within MIT1002_00502 at 546.671 kb on + strand at 546.892 kb on - strand at 546.903 kb on - strand at 546.915 kb on + strand at 546.917 kb on + strand at 546.932 kb on + strand at 546.965 kb on + strand at 547.020 kb on - strand at 547.071 kb on - strand at 547.117 kb on - strand, within MIT1002_00503 at 547.129 kb on - strand, within MIT1002_00503 at 547.154 kb on + strand, within MIT1002_00503 at 547.162 kb on - strand, within MIT1002_00503 at 547.162 kb on - strand, within MIT1002_00503 at 547.164 kb on + strand, within MIT1002_00503 at 547.172 kb on - strand, within MIT1002_00503 at 547.172 kb on - strand, within MIT1002_00503 at 547.196 kb on + strand, within MIT1002_00503 at 547.196 kb on - strand, within MIT1002_00503 at 547.231 kb on - strand, within MIT1002_00503 at 547.297 kb on + strand, within MIT1002_00503 at 547.305 kb on + strand, within MIT1002_00503 at 547.313 kb on - strand, within MIT1002_00503 at 547.358 kb on - strand, within MIT1002_00503 at 547.483 kb on + strand, within MIT1002_00503 at 547.518 kb on + strand, within MIT1002_00503 at 547.552 kb on + strand, within MIT1002_00503 at 547.552 kb on + strand, within MIT1002_00503 at 547.552 kb on + strand, within MIT1002_00503 at 547.560 kb on - strand, within MIT1002_00503 at 547.566 kb on + strand, within MIT1002_00503 at 547.569 kb on - strand, within MIT1002_00503 at 547.576 kb on + strand, within MIT1002_00503 at 547.579 kb on - strand, within MIT1002_00503 at 547.584 kb on - strand, within MIT1002_00503 at 547.639 kb on + strand, within MIT1002_00503 at 547.649 kb on + strand, within MIT1002_00503 at 547.723 kb on + strand, within MIT1002_00503 at 547.739 kb on - strand, within MIT1002_00503 at 547.741 kb on + strand, within MIT1002_00503 at 547.751 kb on + strand, within MIT1002_00503 at 547.822 kb on + strand, within MIT1002_00503 at 547.861 kb on - strand, within MIT1002_00503 at 548.027 kb on - strand, within MIT1002_00503 at 548.052 kb on + strand, within MIT1002_00503 at 548.064 kb on - strand, within MIT1002_00503 at 548.083 kb on - strand, within MIT1002_00503 at 548.155 kb on + strand, within MIT1002_00503 at 548.163 kb on - strand, within MIT1002_00503 at 548.163 kb on - strand, within MIT1002_00503 at 548.174 kb on - strand, within MIT1002_00503 at 548.190 kb on + strand, within MIT1002_00503 at 548.258 kb on + strand, within MIT1002_00503 at 548.258 kb on + strand, within MIT1002_00503 at 548.258 kb on + strand, within MIT1002_00503 at 548.258 kb on + strand, within MIT1002_00503 at 548.258 kb on + strand, within MIT1002_00503 at 548.266 kb on - strand, within MIT1002_00503 at 548.266 kb on - strand, within MIT1002_00503 at 548.266 kb on - strand, within MIT1002_00503 at 548.266 kb on - strand, within MIT1002_00503 at 548.266 kb on - strand, within MIT1002_00503 at 548.290 kb on - strand, within MIT1002_00503 at 548.317 kb on + strand, within MIT1002_00503 at 548.325 kb on - strand, within MIT1002_00503 at 548.422 kb on + strand, within MIT1002_00503 at 548.428 kb on - strand, within MIT1002_00503 at 548.480 kb on + strand, within MIT1002_00503 at 548.480 kb on + strand, within MIT1002_00503 at 548.530 kb on - strand at 548.569 kb on + strand at 548.601 kb on - strand at 548.601 kb on - strand at 548.651 kb on + strand at 548.707 kb on + strand at 548.717 kb on - strand, within MIT1002_00504 at 548.770 kb on - strand, within MIT1002_00504 at 548.859 kb on + strand, within MIT1002_00504 at 548.859 kb on + strand, within MIT1002_00504 at 548.867 kb on - strand, within MIT1002_00504 at 548.933 kb on - strand, within MIT1002_00504 at 549.018 kb on + strand, within MIT1002_00504 at 549.074 kb on + strand, within MIT1002_00504 at 549.082 kb on - strand, within MIT1002_00504 at 549.120 kb on + strand at 549.143 kb on - strand at 549.269 kb on - strand at 549.275 kb on + strand at 549.275 kb on + strand at 549.275 kb on + strand at 549.275 kb on + strand at 549.275 kb on + strand at 549.275 kb on + strand at 549.283 kb on - strand at 549.283 kb on - strand at 549.283 kb on - strand at 549.283 kb on - strand at 549.367 kb on - strand, within MIT1002_00505 at 549.367 kb on - strand, within MIT1002_00505 at 549.382 kb on - strand, within MIT1002_00505 at 549.382 kb on - strand, within MIT1002_00505 at 549.382 kb on - strand, within MIT1002_00505 at 549.416 kb on + strand, within MIT1002_00505 at 549.451 kb on + strand, within MIT1002_00505 at 549.494 kb on + strand, within MIT1002_00505 at 549.494 kb on + strand, within MIT1002_00505 at 549.502 kb on - strand, within MIT1002_00505 at 549.613 kb on - strand, within MIT1002_00505 at 549.639 kb on - strand, within MIT1002_00505 at 549.644 kb on - strand, within MIT1002_00505
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6 remove 545,993 + MIT1002_00501 0.85 -1.2 545,998 - MIT1002_00501 0.87 +0.4 546,036 - -1.8 546,106 + +0.4 546,179 + +0.3 546,285 + -1.5 546,286 + +1.2 546,287 + +0.6 546,295 - +0.5 546,295 - +0.9 546,402 - MIT1002_00502 0.29 +1.4 546,417 - MIT1002_00502 0.33 +0.1 546,510 + MIT1002_00502 0.57 +0.6 546,510 - MIT1002_00502 0.57 +1.0 546,523 + MIT1002_00502 0.61 +0.9 546,610 - MIT1002_00502 0.84 +0.3 546,671 + +0.5 546,892 - -0.6 546,903 - -1.0 546,915 + -4.6 546,917 + -2.7 546,932 + -1.7 546,965 + -3.7 547,020 - -6.5 547,071 - -0.7 547,117 - MIT1002_00503 0.10 -1.4 547,129 - MIT1002_00503 0.11 -1.2 547,154 + MIT1002_00503 0.12 -0.1 547,162 - MIT1002_00503 0.13 -2.4 547,162 - MIT1002_00503 0.13 -2.2 547,164 + MIT1002_00503 0.13 -2.4 547,172 - MIT1002_00503 0.13 -4.6 547,172 - MIT1002_00503 0.13 +0.3 547,196 + MIT1002_00503 0.15 -4.8 547,196 - MIT1002_00503 0.15 -3.5 547,231 - MIT1002_00503 0.17 -4.1 547,297 + MIT1002_00503 0.21 -1.7 547,305 + MIT1002_00503 0.21 -2.8 547,313 - MIT1002_00503 0.21 -5.0 547,358 - MIT1002_00503 0.24 -1.8 547,483 + MIT1002_00503 0.31 -2.7 547,518 + MIT1002_00503 0.33 -1.0 547,552 + MIT1002_00503 0.35 -1.5 547,552 + MIT1002_00503 0.35 -1.6 547,552 + MIT1002_00503 0.35 -1.5 547,560 - MIT1002_00503 0.36 -1.5 547,566 + MIT1002_00503 0.36 -3.0 547,569 - MIT1002_00503 0.36 +0.3 547,576 + MIT1002_00503 0.37 -4.1 547,579 - MIT1002_00503 0.37 -2.4 547,584 - MIT1002_00503 0.37 -1.9 547,639 + MIT1002_00503 0.40 -3.0 547,649 + MIT1002_00503 0.41 -7.0 547,723 + MIT1002_00503 0.45 -3.2 547,739 - MIT1002_00503 0.46 -1.1 547,741 + MIT1002_00503 0.46 -3.0 547,751 + MIT1002_00503 0.47 -1.1 547,822 + MIT1002_00503 0.51 -0.7 547,861 - MIT1002_00503 0.53 -2.0 548,027 - MIT1002_00503 0.63 -3.1 548,052 + MIT1002_00503 0.64 -3.5 548,064 - MIT1002_00503 0.65 -2.3 548,083 - MIT1002_00503 0.66 -3.4 548,155 + MIT1002_00503 0.70 -1.4 548,163 - MIT1002_00503 0.71 -0.8 548,163 - MIT1002_00503 0.71 -1.6 548,174 - MIT1002_00503 0.72 -0.4 548,190 + MIT1002_00503 0.72 -1.4 548,258 + MIT1002_00503 0.76 -1.2 548,258 + MIT1002_00503 0.76 -3.0 548,258 + MIT1002_00503 0.76 -1.9 548,258 + MIT1002_00503 0.76 -1.4 548,258 + MIT1002_00503 0.76 +1.1 548,266 - MIT1002_00503 0.77 -1.2 548,266 - MIT1002_00503 0.77 -0.7 548,266 - MIT1002_00503 0.77 +0.8 548,266 - MIT1002_00503 0.77 +0.5 548,266 - MIT1002_00503 0.77 -2.1 548,290 - MIT1002_00503 0.78 -1.1 548,317 + MIT1002_00503 0.80 -3.0 548,325 - MIT1002_00503 0.80 -0.6 548,422 + MIT1002_00503 0.86 -3.8 548,428 - MIT1002_00503 0.86 -2.9 548,480 + MIT1002_00503 0.89 -5.0 548,480 + MIT1002_00503 0.89 -2.3 548,530 - -2.5 548,569 + -2.6 548,601 - -3.3 548,601 - -5.2 548,651 + -3.3 548,707 + -4.3 548,717 - MIT1002_00504 0.11 -9.2 548,770 - MIT1002_00504 0.22 -3.1 548,859 + MIT1002_00504 0.40 -1.8 548,859 + MIT1002_00504 0.40 -3.9 548,867 - MIT1002_00504 0.41 -1.0 548,933 - MIT1002_00504 0.54 -2.4 549,018 + MIT1002_00504 0.71 -2.5 549,074 + MIT1002_00504 0.83 -0.5 549,082 - MIT1002_00504 0.84 -2.4 549,120 + -2.0 549,143 - -1.9 549,269 - +0.5 549,275 + +1.7 549,275 + +0.6 549,275 + +0.1 549,275 + -1.9 549,275 + +0.8 549,275 + +0.1 549,283 - +0.4 549,283 - -0.4 549,283 - -0.4 549,283 - +0.1 549,367 - MIT1002_00505 0.12 +0.2 549,367 - MIT1002_00505 0.12 +0.4 549,382 - MIT1002_00505 0.13 +1.8 549,382 - MIT1002_00505 0.13 -0.1 549,382 - MIT1002_00505 0.13 -1.6 549,416 + MIT1002_00505 0.17 -1.4 549,451 + MIT1002_00505 0.20 +0.8 549,494 + MIT1002_00505 0.24 -1.7 549,494 + MIT1002_00505 0.24 +1.1 549,502 - MIT1002_00505 0.25 -1.3 549,613 - MIT1002_00505 0.35 +1.5 549,639 - MIT1002_00505 0.38 -1.2 549,644 - MIT1002_00505 0.38 +0.6
Or see this region's nucleotide sequence