Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00486

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00485 and MIT1002_00486 are separated by 10 nucleotidesMIT1002_00486 and MIT1002_00487 are separated by 62 nucleotidesMIT1002_00487 and MIT1002_00488 are separated by 12 nucleotides MIT1002_00485: MIT1002_00485 - Glycerol-3-phosphate dehydrogenase [NAD(P)+], at 530,457 to 531,488 _00485 MIT1002_00486: MIT1002_00486 - Protein-export protein SecB, at 531,499 to 532,008 _00486 MIT1002_00487: MIT1002_00487 - Glutaredoxin-3, at 532,071 to 532,331 _00487 MIT1002_00488: MIT1002_00488 - Thiosulfate sulfurtransferase GlpE, at 532,344 to 532,769 _00488 Position (kb) 531 532 533Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 530.523 kb on + strandat 530.531 kb on - strandat 530.541 kb on - strandat 530.541 kb on - strandat 530.613 kb on - strand, within MIT1002_00485at 530.623 kb on + strand, within MIT1002_00485at 530.785 kb on + strand, within MIT1002_00485at 530.795 kb on - strand, within MIT1002_00485at 530.853 kb on + strand, within MIT1002_00485at 530.861 kb on - strand, within MIT1002_00485at 530.941 kb on - strand, within MIT1002_00485at 530.950 kb on - strand, within MIT1002_00485at 530.950 kb on - strand, within MIT1002_00485at 530.960 kb on - strand, within MIT1002_00485at 531.015 kb on + strand, within MIT1002_00485at 531.015 kb on + strand, within MIT1002_00485at 531.023 kb on - strand, within MIT1002_00485at 531.023 kb on - strand, within MIT1002_00485at 531.097 kb on + strand, within MIT1002_00485at 531.166 kb on + strand, within MIT1002_00485at 531.179 kb on + strand, within MIT1002_00485at 531.197 kb on - strand, within MIT1002_00485at 531.219 kb on - strand, within MIT1002_00485at 531.283 kb on - strand, within MIT1002_00485at 531.336 kb on + strand, within MIT1002_00485at 531.364 kb on + strand, within MIT1002_00485at 531.374 kb on + strand, within MIT1002_00485at 531.382 kb on - strand, within MIT1002_00485at 531.387 kb on - strandat 531.419 kb on + strandat 531.481 kb on + strandat 531.489 kb on - strandat 531.518 kb on + strandat 531.598 kb on - strand, within MIT1002_00486at 532.061 kb on - strandat 532.109 kb on - strand, within MIT1002_00487at 532.222 kb on - strand, within MIT1002_00487at 532.222 kb on - strand, within MIT1002_00487at 532.222 kb on - strand, within MIT1002_00487at 532.222 kb on - strand, within MIT1002_00487at 532.324 kb on - strandat 532.369 kb on - strandat 532.369 kb on - strandat 532.461 kb on - strand, within MIT1002_00488at 532.497 kb on + strand, within MIT1002_00488at 532.537 kb on + strand, within MIT1002_00488at 532.570 kb on + strand, within MIT1002_00488at 532.570 kb on + strand, within MIT1002_00488at 532.570 kb on + strand, within MIT1002_00488at 532.570 kb on + strand, within MIT1002_00488at 532.655 kb on - strand, within MIT1002_00488at 532.772 kb on + strandat 532.772 kb on + strandat 532.773 kb on + strandat 532.773 kb on + strandat 532.773 kb on + strandat 532.773 kb on + strandat 532.773 kb on + strandat 532.780 kb on - strandat 532.781 kb on - strandat 532.781 kb on - strandat 532.781 kb on - strandat 532.781 kb on - strandat 532.801 kb on - strandat 532.803 kb on + strandat 532.850 kb on - strandat 532.922 kb on + strandat 532.922 kb on + strandat 532.922 kb on + strandat 532.922 kb on + strandat 532.922 kb on + strandat 532.930 kb on - strandat 532.944 kb on - strandat 532.981 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6
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530,523 + -2.2
530,531 - -1.9
530,541 - -1.5
530,541 - -0.1
530,613 - MIT1002_00485 0.15 +1.1
530,623 + MIT1002_00485 0.16 -2.4
530,785 + MIT1002_00485 0.32 -1.0
530,795 - MIT1002_00485 0.33 -3.0
530,853 + MIT1002_00485 0.38 +1.1
530,861 - MIT1002_00485 0.39 -3.5
530,941 - MIT1002_00485 0.47 -2.4
530,950 - MIT1002_00485 0.48 -2.5
530,950 - MIT1002_00485 0.48 -3.8
530,960 - MIT1002_00485 0.49 -1.0
531,015 + MIT1002_00485 0.54 -2.6
531,015 + MIT1002_00485 0.54 -3.3
531,023 - MIT1002_00485 0.55 -2.8
531,023 - MIT1002_00485 0.55 -1.8
531,097 + MIT1002_00485 0.62 -3.7
531,166 + MIT1002_00485 0.69 -1.0
531,179 + MIT1002_00485 0.70 -2.6
531,197 - MIT1002_00485 0.72 -2.9
531,219 - MIT1002_00485 0.74 -0.4
531,283 - MIT1002_00485 0.80 -1.6
531,336 + MIT1002_00485 0.85 -1.6
531,364 + MIT1002_00485 0.88 -0.8
531,374 + MIT1002_00485 0.89 -2.0
531,382 - MIT1002_00485 0.90 -5.6
531,387 - -3.4
531,419 + -1.9
531,481 + -3.4
531,489 - -3.1
531,518 + -2.3
531,598 - MIT1002_00486 0.19 -2.4
532,061 - +1.1
532,109 - MIT1002_00487 0.15 -0.9
532,222 - MIT1002_00487 0.58 -1.9
532,222 - MIT1002_00487 0.58 -1.7
532,222 - MIT1002_00487 0.58 +0.3
532,222 - MIT1002_00487 0.58 -0.6
532,324 - +1.1
532,369 - -1.3
532,369 - -1.8
532,461 - MIT1002_00488 0.27 -0.5
532,497 + MIT1002_00488 0.36 +0.3
532,537 + MIT1002_00488 0.45 -0.6
532,570 + MIT1002_00488 0.53 +1.0
532,570 + MIT1002_00488 0.53 -1.1
532,570 + MIT1002_00488 0.53 +0.9
532,570 + MIT1002_00488 0.53 -0.4
532,655 - MIT1002_00488 0.73 +2.1
532,772 + -1.4
532,772 + +1.3
532,773 + -1.0
532,773 + -0.1
532,773 + +0.3
532,773 + +1.1
532,773 + -1.8
532,780 - +0.2
532,781 - +1.9
532,781 - -2.3
532,781 - -0.5
532,781 - -0.7
532,801 - +0.8
532,803 + +0.6
532,850 - -2.9
532,922 + -1.6
532,922 + +0.5
532,922 + +2.8
532,922 + -1.5
532,922 + +0.3
532,930 - -1.4
532,944 - +0.6
532,981 + -0.2

Or see this region's nucleotide sequence