Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00471

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMIT1002_00469 and MIT1002_00470 overlap by 4 nucleotidesMIT1002_00470 and MIT1002_00471 overlap by 4 nucleotidesMIT1002_00471 and MIT1002_00472 are separated by 613 nucleotides MIT1002_00469: MIT1002_00469 - Ornithine carbamoyltransferase, at 513,184 to 514,095 _00469 MIT1002_00470: MIT1002_00470 - Acetylglutamate kinase, at 514,092 to 514,937 _00470 MIT1002_00471: MIT1002_00471 - N-acetyl-gamma-glutamyl-phosphate reductase, at 514,934 to 515,947 _00471 MIT1002_00472: MIT1002_00472 - Methylglyoxal synthase, at 516,561 to 516,971 _00472 Position (kb) 514 515 516Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1 2at 513.963 kb on + strand, within MIT1002_00469at 514.068 kb on + strandat 514.075 kb on + strandat 514.075 kb on + strandat 514.083 kb on - strandat 514.083 kb on - strandat 514.083 kb on - strandat 514.083 kb on - strandat 514.083 kb on - strandat 514.083 kb on - strandat 514.083 kb on - strandat 514.089 kb on + strandat 514.134 kb on + strandat 514.134 kb on + strandat 514.142 kb on - strandat 514.159 kb on + strandat 514.167 kb on - strandat 514.169 kb on + strandat 514.177 kb on - strand, within MIT1002_00470at 514.189 kb on - strand, within MIT1002_00470at 514.297 kb on - strand, within MIT1002_00470at 514.317 kb on + strand, within MIT1002_00470at 514.325 kb on - strand, within MIT1002_00470at 514.428 kb on - strand, within MIT1002_00470at 514.487 kb on + strand, within MIT1002_00470at 514.488 kb on + strand, within MIT1002_00470at 514.496 kb on + strand, within MIT1002_00470at 514.587 kb on - strand, within MIT1002_00470at 514.592 kb on - strand, within MIT1002_00470at 514.600 kb on + strand, within MIT1002_00470at 514.616 kb on - strand, within MIT1002_00470at 514.647 kb on + strand, within MIT1002_00470at 514.655 kb on - strand, within MIT1002_00470at 514.655 kb on - strand, within MIT1002_00470at 514.655 kb on - strand, within MIT1002_00470at 514.672 kb on + strand, within MIT1002_00470at 514.672 kb on + strand, within MIT1002_00470at 514.672 kb on + strand, within MIT1002_00470at 514.672 kb on + strand, within MIT1002_00470at 514.680 kb on - strand, within MIT1002_00470at 514.689 kb on + strand, within MIT1002_00470at 514.695 kb on + strand, within MIT1002_00470at 514.720 kb on + strand, within MIT1002_00470at 514.720 kb on + strand, within MIT1002_00470at 514.725 kb on + strand, within MIT1002_00470at 514.728 kb on - strand, within MIT1002_00470at 514.749 kb on - strand, within MIT1002_00470at 514.767 kb on + strand, within MIT1002_00470at 514.796 kb on + strand, within MIT1002_00470at 514.804 kb on - strand, within MIT1002_00470at 514.850 kb on + strand, within MIT1002_00470at 514.903 kb on - strandat 514.933 kb on + strandat 514.939 kb on + strandat 514.947 kb on - strandat 514.948 kb on - strandat 514.948 kb on - strandat 514.949 kb on + strandat 514.958 kb on - strandat 514.974 kb on + strandat 515.007 kb on - strandat 515.033 kb on + strandat 515.033 kb on + strandat 515.074 kb on - strand, within MIT1002_00471at 515.098 kb on - strand, within MIT1002_00471at 515.141 kb on + strand, within MIT1002_00471at 515.143 kb on - strand, within MIT1002_00471at 515.159 kb on - strand, within MIT1002_00471at 515.163 kb on + strand, within MIT1002_00471at 515.163 kb on + strand, within MIT1002_00471at 515.163 kb on + strand, within MIT1002_00471at 515.163 kb on + strand, within MIT1002_00471at 515.163 kb on + strand, within MIT1002_00471at 515.197 kb on - strand, within MIT1002_00471at 515.199 kb on + strand, within MIT1002_00471at 515.199 kb on + strand, within MIT1002_00471at 515.199 kb on + strand, within MIT1002_00471at 515.199 kb on + strand, within MIT1002_00471at 515.199 kb on + strand, within MIT1002_00471at 515.207 kb on - strand, within MIT1002_00471at 515.207 kb on - strand, within MIT1002_00471at 515.207 kb on - strand, within MIT1002_00471at 515.207 kb on - strand, within MIT1002_00471at 515.207 kb on - strand, within MIT1002_00471at 515.312 kb on + strand, within MIT1002_00471at 515.316 kb on + strand, within MIT1002_00471at 515.320 kb on - strand, within MIT1002_00471at 515.322 kb on + strand, within MIT1002_00471at 515.322 kb on + strand, within MIT1002_00471at 515.322 kb on + strand, within MIT1002_00471at 515.322 kb on - strand, within MIT1002_00471at 515.390 kb on + strand, within MIT1002_00471at 515.398 kb on - strand, within MIT1002_00471at 515.408 kb on - strand, within MIT1002_00471at 515.451 kb on + strand, within MIT1002_00471at 515.461 kb on + strand, within MIT1002_00471at 515.473 kb on + strand, within MIT1002_00471at 515.494 kb on - strand, within MIT1002_00471at 515.511 kb on - strand, within MIT1002_00471at 515.543 kb on + strand, within MIT1002_00471at 515.543 kb on + strand, within MIT1002_00471at 515.551 kb on - strand, within MIT1002_00471at 515.551 kb on - strand, within MIT1002_00471at 515.572 kb on - strand, within MIT1002_00471at 515.597 kb on - strand, within MIT1002_00471at 515.597 kb on - strand, within MIT1002_00471at 515.597 kb on - strand, within MIT1002_00471at 515.617 kb on + strand, within MIT1002_00471at 515.617 kb on + strand, within MIT1002_00471at 515.625 kb on - strand, within MIT1002_00471at 515.625 kb on - strand, within MIT1002_00471at 515.625 kb on - strand, within MIT1002_00471at 515.639 kb on - strand, within MIT1002_00471at 515.692 kb on - strand, within MIT1002_00471at 515.773 kb on + strand, within MIT1002_00471at 515.816 kb on + strand, within MIT1002_00471at 515.816 kb on + strand, within MIT1002_00471at 515.816 kb on + strand, within MIT1002_00471at 515.816 kb on + strand, within MIT1002_00471at 515.824 kb on - strand, within MIT1002_00471at 515.824 kb on - strand, within MIT1002_00471at 515.824 kb on - strand, within MIT1002_00471at 515.840 kb on - strand, within MIT1002_00471at 515.898 kb on + strandat 515.909 kb on + strandat 516.087 kb on + strandat 516.092 kb on + strandat 516.095 kb on - strandat 516.112 kb on + strandat 516.117 kb on + strandat 516.124 kb on + strandat 516.356 kb on + strandat 516.436 kb on - strandat 516.436 kb on - strandat 516.473 kb on + strandat 516.475 kb on + strandat 516.481 kb on - strandat 516.481 kb on - strandat 516.481 kb on - strandat 516.483 kb on - strandat 516.501 kb on - strandat 516.519 kb on - strandat 516.541 kb on + strandat 516.593 kb on - strandat 516.622 kb on + strand, within MIT1002_00472at 516.622 kb on + strand, within MIT1002_00472at 516.622 kb on + strand, within MIT1002_00472at 516.632 kb on + strand, within MIT1002_00472at 516.632 kb on + strand, within MIT1002_00472at 516.634 kb on + strand, within MIT1002_00472at 516.634 kb on + strand, within MIT1002_00472at 516.653 kb on + strand, within MIT1002_00472at 516.661 kb on - strand, within MIT1002_00472at 516.661 kb on - strand, within MIT1002_00472at 516.661 kb on - strand, within MIT1002_00472at 516.671 kb on + strand, within MIT1002_00472at 516.685 kb on + strand, within MIT1002_00472at 516.706 kb on + strand, within MIT1002_00472at 516.745 kb on - strand, within MIT1002_00472at 516.760 kb on - strand, within MIT1002_00472at 516.812 kb on + strand, within MIT1002_00472at 516.817 kb on + strand, within MIT1002_00472at 516.832 kb on + strand, within MIT1002_00472at 516.832 kb on + strand, within MIT1002_00472at 516.839 kb on + strand, within MIT1002_00472at 516.840 kb on - strand, within MIT1002_00472at 516.857 kb on + strand, within MIT1002_00472at 516.868 kb on - strand, within MIT1002_00472at 516.871 kb on + strand, within MIT1002_00472at 516.872 kb on + strand, within MIT1002_00472at 516.872 kb on + strand, within MIT1002_00472at 516.896 kb on + strand, within MIT1002_00472at 516.896 kb on + strand, within MIT1002_00472at 516.896 kb on + strand, within MIT1002_00472

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6
remove
513,963 + MIT1002_00469 0.85 -2.9
514,068 + -2.1
514,075 + -2.1
514,075 + +0.8
514,083 - -3.0
514,083 - +0.1
514,083 - -2.4
514,083 - -1.9
514,083 - +0.1
514,083 - -3.9
514,083 - -4.6
514,089 + -5.9
514,134 + -3.3
514,134 + -4.7
514,142 - +0.3
514,159 + -3.7
514,167 - -3.5
514,169 + -1.6
514,177 - MIT1002_00470 0.10 +0.6
514,189 - MIT1002_00470 0.11 -2.3
514,297 - MIT1002_00470 0.24 -1.5
514,317 + MIT1002_00470 0.27 -0.2
514,325 - MIT1002_00470 0.28 -3.6
514,428 - MIT1002_00470 0.40 -1.6
514,487 + MIT1002_00470 0.47 -4.4
514,488 + MIT1002_00470 0.47 -3.5
514,496 + MIT1002_00470 0.48 -2.9
514,587 - MIT1002_00470 0.59 -2.6
514,592 - MIT1002_00470 0.59 -3.1
514,600 + MIT1002_00470 0.60 -3.6
514,616 - MIT1002_00470 0.62 +0.1
514,647 + MIT1002_00470 0.66 -1.6
514,655 - MIT1002_00470 0.67 -6.6
514,655 - MIT1002_00470 0.67 -4.0
514,655 - MIT1002_00470 0.67 -1.0
514,672 + MIT1002_00470 0.69 -2.4
514,672 + MIT1002_00470 0.69 -3.5
514,672 + MIT1002_00470 0.69 -2.4
514,672 + MIT1002_00470 0.69 -4.7
514,680 - MIT1002_00470 0.70 -2.7
514,689 + MIT1002_00470 0.71 -3.2
514,695 + MIT1002_00470 0.71 -3.0
514,720 + MIT1002_00470 0.74 -4.8
514,720 + MIT1002_00470 0.74 -2.9
514,725 + MIT1002_00470 0.75 -4.6
514,728 - MIT1002_00470 0.75 -2.6
514,749 - MIT1002_00470 0.78 -2.4
514,767 + MIT1002_00470 0.80 -3.5
514,796 + MIT1002_00470 0.83 -2.6
514,804 - MIT1002_00470 0.84 -3.4
514,850 + MIT1002_00470 0.90 -1.2
514,903 - -0.1
514,933 + -2.6
514,939 + -2.4
514,947 - +0.5
514,948 - -1.9
514,948 - -0.2
514,949 + -1.6
514,958 - -0.8
514,974 + -3.2
515,007 - -2.9
515,033 + -0.5
515,033 + -3.6
515,074 - MIT1002_00471 0.14 -2.9
515,098 - MIT1002_00471 0.16 -0.5
515,141 + MIT1002_00471 0.20 -2.1
515,143 - MIT1002_00471 0.21 -4.2
515,159 - MIT1002_00471 0.22 -3.2
515,163 + MIT1002_00471 0.23 -2.4
515,163 + MIT1002_00471 0.23 -3.2
515,163 + MIT1002_00471 0.23 -3.2
515,163 + MIT1002_00471 0.23 -2.7
515,163 + MIT1002_00471 0.23 -1.2
515,197 - MIT1002_00471 0.26 -2.8
515,199 + MIT1002_00471 0.26 -1.2
515,199 + MIT1002_00471 0.26 -2.3
515,199 + MIT1002_00471 0.26 -0.9
515,199 + MIT1002_00471 0.26 -3.1
515,199 + MIT1002_00471 0.26 -0.2
515,207 - MIT1002_00471 0.27 -0.7
515,207 - MIT1002_00471 0.27 -4.7
515,207 - MIT1002_00471 0.27 -0.4
515,207 - MIT1002_00471 0.27 -4.0
515,207 - MIT1002_00471 0.27 -2.7
515,312 + MIT1002_00471 0.37 -2.6
515,316 + MIT1002_00471 0.38 -6.5
515,320 - MIT1002_00471 0.38 -2.4
515,322 + MIT1002_00471 0.38 -1.6
515,322 + MIT1002_00471 0.38 -2.6
515,322 + MIT1002_00471 0.38 -7.3
515,322 - MIT1002_00471 0.38 -4.0
515,390 + MIT1002_00471 0.45 -1.7
515,398 - MIT1002_00471 0.46 +1.1
515,408 - MIT1002_00471 0.47 -3.3
515,451 + MIT1002_00471 0.51 -3.9
515,461 + MIT1002_00471 0.52 -1.6
515,473 + MIT1002_00471 0.53 -2.1
515,494 - MIT1002_00471 0.55 -3.6
515,511 - MIT1002_00471 0.57 -3.5
515,543 + MIT1002_00471 0.60 -4.8
515,543 + MIT1002_00471 0.60 -3.3
515,551 - MIT1002_00471 0.61 -6.2
515,551 - MIT1002_00471 0.61 -0.1
515,572 - MIT1002_00471 0.63 +1.1
515,597 - MIT1002_00471 0.65 -4.0
515,597 - MIT1002_00471 0.65 -3.8
515,597 - MIT1002_00471 0.65 -3.1
515,617 + MIT1002_00471 0.67 -2.9
515,617 + MIT1002_00471 0.67 -2.0
515,625 - MIT1002_00471 0.68 -3.5
515,625 - MIT1002_00471 0.68 -3.6
515,625 - MIT1002_00471 0.68 -4.9
515,639 - MIT1002_00471 0.70 -1.6
515,692 - MIT1002_00471 0.75 -3.8
515,773 + MIT1002_00471 0.83 -1.0
515,816 + MIT1002_00471 0.87 -7.1
515,816 + MIT1002_00471 0.87 +0.8
515,816 + MIT1002_00471 0.87 -3.1
515,816 + MIT1002_00471 0.87 -2.6
515,824 - MIT1002_00471 0.88 -3.2
515,824 - MIT1002_00471 0.88 +0.5
515,824 - MIT1002_00471 0.88 -3.2
515,840 - MIT1002_00471 0.89 -4.0
515,898 + -3.7
515,909 + -4.7
516,087 + -2.5
516,092 + -0.1
516,095 - -0.1
516,112 + -2.6
516,117 + -3.8
516,124 + -3.5
516,356 + +0.3
516,436 - +0.9
516,436 - +0.5
516,473 + +0.2
516,475 + +1.5
516,481 - +0.3
516,481 - -0.2
516,481 - -2.4
516,483 - -1.1
516,501 - -0.4
516,519 - -0.3
516,541 + +0.2
516,593 - +1.2
516,622 + MIT1002_00472 0.15 -0.7
516,622 + MIT1002_00472 0.15 -2.3
516,622 + MIT1002_00472 0.15 +1.2
516,632 + MIT1002_00472 0.17 -1.9
516,632 + MIT1002_00472 0.17 -2.2
516,634 + MIT1002_00472 0.18 +1.6
516,634 + MIT1002_00472 0.18 -0.1
516,653 + MIT1002_00472 0.22 +0.5
516,661 - MIT1002_00472 0.24 -0.2
516,661 - MIT1002_00472 0.24 -1.5
516,661 - MIT1002_00472 0.24 +2.1
516,671 + MIT1002_00472 0.27 -0.4
516,685 + MIT1002_00472 0.30 -0.8
516,706 + MIT1002_00472 0.35 +1.0
516,745 - MIT1002_00472 0.45 +1.8
516,760 - MIT1002_00472 0.48 +0.4
516,812 + MIT1002_00472 0.61 -1.0
516,817 + MIT1002_00472 0.62 -1.5
516,832 + MIT1002_00472 0.66 +0.2
516,832 + MIT1002_00472 0.66 -3.1
516,839 + MIT1002_00472 0.68 -0.2
516,840 - MIT1002_00472 0.68 -1.7
516,857 + MIT1002_00472 0.72 +1.1
516,868 - MIT1002_00472 0.75 -1.2
516,871 + MIT1002_00472 0.75 -1.2
516,872 + MIT1002_00472 0.76 +0.0
516,872 + MIT1002_00472 0.76 -1.2
516,896 + MIT1002_00472 0.82 -0.9
516,896 + MIT1002_00472 0.82 +0.6
516,896 + MIT1002_00472 0.82 -1.3

Or see this region's nucleotide sequence