Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00465 and MIT1002_00466 are separated by 185 nucleotides MIT1002_00466 and MIT1002_00467 are separated by 18 nucleotides
MIT1002_00465: MIT1002_00465 - monoglyceride lipase, at 508,088 to 508,984
_00465
MIT1002_00466: MIT1002_00466 - Amino-acid acetyltransferase, at 509,170 to 510,480
_00466
MIT1002_00467: MIT1002_00467 - Argininosuccinate lyase, at 510,499 to 511,881
_00467
Position (kb) 509
510
511 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3 at 508.179 kb on + strand, within MIT1002_00465 at 508.266 kb on + strand, within MIT1002_00465 at 508.361 kb on + strand, within MIT1002_00465 at 508.361 kb on + strand, within MIT1002_00465 at 508.369 kb on - strand, within MIT1002_00465 at 508.466 kb on + strand, within MIT1002_00465 at 508.535 kb on + strand, within MIT1002_00465 at 508.535 kb on + strand, within MIT1002_00465 at 508.543 kb on - strand, within MIT1002_00465 at 508.564 kb on + strand, within MIT1002_00465 at 508.586 kb on + strand, within MIT1002_00465 at 508.586 kb on - strand, within MIT1002_00465 at 508.642 kb on - strand, within MIT1002_00465 at 508.692 kb on + strand, within MIT1002_00465 at 508.782 kb on - strand, within MIT1002_00465 at 508.868 kb on - strand, within MIT1002_00465 at 508.881 kb on - strand, within MIT1002_00465 at 508.905 kb on + strand at 508.966 kb on + strand at 508.966 kb on + strand at 508.966 kb on + strand at 508.966 kb on + strand at 508.974 kb on - strand at 509.101 kb on + strand at 509.175 kb on + strand at 509.190 kb on + strand at 509.190 kb on + strand at 509.190 kb on + strand at 509.190 kb on + strand at 509.190 kb on + strand at 509.190 kb on + strand at 509.190 kb on + strand at 509.198 kb on - strand at 509.198 kb on - strand at 509.198 kb on - strand at 509.198 kb on - strand at 509.198 kb on - strand at 509.198 kb on - strand at 509.215 kb on - strand at 509.256 kb on + strand at 509.256 kb on + strand at 509.256 kb on + strand at 509.256 kb on + strand at 509.264 kb on - strand at 509.264 kb on - strand at 509.264 kb on - strand at 509.264 kb on - strand at 509.264 kb on - strand at 509.264 kb on - strand at 509.264 kb on - strand at 509.338 kb on + strand, within MIT1002_00466 at 509.371 kb on + strand, within MIT1002_00466 at 509.386 kb on + strand, within MIT1002_00466 at 509.396 kb on - strand, within MIT1002_00466 at 509.407 kb on + strand, within MIT1002_00466 at 509.407 kb on + strand, within MIT1002_00466 at 509.415 kb on - strand, within MIT1002_00466 at 509.415 kb on - strand, within MIT1002_00466 at 509.420 kb on - strand, within MIT1002_00466 at 509.440 kb on + strand, within MIT1002_00466 at 509.464 kb on - strand, within MIT1002_00466 at 509.483 kb on + strand, within MIT1002_00466 at 509.493 kb on + strand, within MIT1002_00466 at 509.711 kb on - strand, within MIT1002_00466 at 509.795 kb on + strand, within MIT1002_00466 at 509.813 kb on - strand, within MIT1002_00466 at 509.844 kb on - strand, within MIT1002_00466 at 509.847 kb on - strand, within MIT1002_00466 at 509.847 kb on - strand, within MIT1002_00466 at 509.926 kb on + strand, within MIT1002_00466 at 510.012 kb on + strand, within MIT1002_00466 at 510.025 kb on + strand, within MIT1002_00466 at 510.035 kb on - strand, within MIT1002_00466 at 510.065 kb on + strand, within MIT1002_00466 at 510.073 kb on - strand, within MIT1002_00466 at 510.154 kb on + strand, within MIT1002_00466 at 510.169 kb on - strand, within MIT1002_00466 at 510.197 kb on - strand, within MIT1002_00466 at 510.199 kb on + strand, within MIT1002_00466 at 510.230 kb on - strand, within MIT1002_00466 at 510.269 kb on - strand, within MIT1002_00466 at 510.285 kb on + strand, within MIT1002_00466 at 510.293 kb on - strand, within MIT1002_00466 at 510.298 kb on + strand, within MIT1002_00466 at 510.308 kb on - strand, within MIT1002_00466 at 510.323 kb on + strand, within MIT1002_00466 at 510.323 kb on + strand, within MIT1002_00466 at 510.323 kb on + strand, within MIT1002_00466 at 510.323 kb on - strand, within MIT1002_00466 at 510.331 kb on - strand, within MIT1002_00466 at 510.331 kb on - strand, within MIT1002_00466 at 510.341 kb on - strand, within MIT1002_00466 at 510.403 kb on + strand at 510.404 kb on + strand at 510.425 kb on + strand at 510.432 kb on + strand at 510.433 kb on - strand at 510.448 kb on - strand at 510.450 kb on + strand at 510.477 kb on - strand at 510.496 kb on - strand at 510.499 kb on - strand at 510.501 kb on + strand at 510.598 kb on + strand at 510.604 kb on + strand at 510.627 kb on + strand at 510.693 kb on - strand, within MIT1002_00467 at 510.698 kb on + strand, within MIT1002_00467 at 510.698 kb on + strand, within MIT1002_00467 at 510.705 kb on - strand, within MIT1002_00467 at 510.732 kb on - strand, within MIT1002_00467 at 510.732 kb on - strand, within MIT1002_00467 at 510.732 kb on - strand, within MIT1002_00467 at 510.734 kb on + strand, within MIT1002_00467 at 510.734 kb on + strand, within MIT1002_00467 at 510.734 kb on + strand, within MIT1002_00467 at 510.742 kb on - strand, within MIT1002_00467 at 510.756 kb on - strand, within MIT1002_00467 at 510.782 kb on - strand, within MIT1002_00467 at 510.804 kb on + strand, within MIT1002_00467 at 510.820 kb on - strand, within MIT1002_00467 at 510.822 kb on - strand, within MIT1002_00467 at 510.847 kb on - strand, within MIT1002_00467 at 510.946 kb on + strand, within MIT1002_00467 at 510.995 kb on + strand, within MIT1002_00467 at 511.052 kb on + strand, within MIT1002_00467 at 511.084 kb on + strand, within MIT1002_00467 at 511.092 kb on - strand, within MIT1002_00467 at 511.154 kb on - strand, within MIT1002_00467 at 511.183 kb on + strand, within MIT1002_00467 at 511.189 kb on + strand, within MIT1002_00467 at 511.189 kb on + strand, within MIT1002_00467 at 511.191 kb on - strand, within MIT1002_00467 at 511.197 kb on - strand, within MIT1002_00467 at 511.197 kb on - strand, within MIT1002_00467 at 511.200 kb on + strand, within MIT1002_00467 at 511.216 kb on - strand, within MIT1002_00467 at 511.218 kb on - strand, within MIT1002_00467 at 511.236 kb on + strand, within MIT1002_00467 at 511.293 kb on + strand, within MIT1002_00467 at 511.294 kb on + strand, within MIT1002_00467 at 511.294 kb on + strand, within MIT1002_00467 at 511.294 kb on + strand, within MIT1002_00467 at 511.302 kb on - strand, within MIT1002_00467 at 511.311 kb on - strand, within MIT1002_00467 at 511.338 kb on + strand, within MIT1002_00467 at 511.347 kb on - strand, within MIT1002_00467 at 511.372 kb on - strand, within MIT1002_00467 at 511.378 kb on + strand, within MIT1002_00467 at 511.378 kb on - strand, within MIT1002_00467 at 511.383 kb on - strand, within MIT1002_00467 at 511.398 kb on + strand, within MIT1002_00467 at 511.408 kb on + strand, within MIT1002_00467 at 511.408 kb on + strand, within MIT1002_00467 at 511.416 kb on - strand, within MIT1002_00467 at 511.424 kb on + strand, within MIT1002_00467 at 511.425 kb on - strand, within MIT1002_00467
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6 remove 508,179 + MIT1002_00465 0.10 -0.6 508,266 + MIT1002_00465 0.20 +0.6 508,361 + MIT1002_00465 0.30 +0.0 508,361 + MIT1002_00465 0.30 +0.3 508,369 - MIT1002_00465 0.31 -2.7 508,466 + MIT1002_00465 0.42 -1.3 508,535 + MIT1002_00465 0.50 +1.1 508,535 + MIT1002_00465 0.50 -0.1 508,543 - MIT1002_00465 0.51 -1.8 508,564 + MIT1002_00465 0.53 -1.6 508,586 + MIT1002_00465 0.56 -0.3 508,586 - MIT1002_00465 0.56 +2.8 508,642 - MIT1002_00465 0.62 -1.7 508,692 + MIT1002_00465 0.67 +2.2 508,782 - MIT1002_00465 0.77 +0.9 508,868 - MIT1002_00465 0.87 -1.6 508,881 - MIT1002_00465 0.88 +0.9 508,905 + -2.2 508,966 + +0.2 508,966 + -0.7 508,966 + -0.4 508,966 + -0.9 508,974 - +0.9 509,101 + -1.4 509,175 + -1.7 509,190 + +1.1 509,190 + -4.1 509,190 + -3.4 509,190 + -2.7 509,190 + -0.8 509,190 + +0.5 509,190 + -3.6 509,198 - -0.7 509,198 - -2.7 509,198 - -0.2 509,198 - -2.2 509,198 - -4.5 509,198 - +0.8 509,215 - -0.2 509,256 + -4.0 509,256 + -1.8 509,256 + -3.1 509,256 + +1.1 509,264 - -2.9 509,264 - -3.7 509,264 - -0.2 509,264 - -5.0 509,264 - -6.5 509,264 - +1.1 509,264 - -4.4 509,338 + MIT1002_00466 0.13 -2.6 509,371 + MIT1002_00466 0.15 -1.2 509,386 + MIT1002_00466 0.16 -0.5 509,396 - MIT1002_00466 0.17 -2.8 509,407 + MIT1002_00466 0.18 -2.0 509,407 + MIT1002_00466 0.18 -2.3 509,415 - MIT1002_00466 0.19 -3.2 509,415 - MIT1002_00466 0.19 -1.4 509,420 - MIT1002_00466 0.19 +0.3 509,440 + MIT1002_00466 0.21 -1.1 509,464 - MIT1002_00466 0.22 -2.6 509,483 + MIT1002_00466 0.24 -1.6 509,493 + MIT1002_00466 0.25 -2.4 509,711 - MIT1002_00466 0.41 -6.1 509,795 + MIT1002_00466 0.48 -2.1 509,813 - MIT1002_00466 0.49 -3.0 509,844 - MIT1002_00466 0.51 -2.1 509,847 - MIT1002_00466 0.52 -3.7 509,847 - MIT1002_00466 0.52 -1.0 509,926 + MIT1002_00466 0.58 -1.6 510,012 + MIT1002_00466 0.64 -0.1 510,025 + MIT1002_00466 0.65 -2.2 510,035 - MIT1002_00466 0.66 -3.3 510,065 + MIT1002_00466 0.68 -1.2 510,073 - MIT1002_00466 0.69 -0.2 510,154 + MIT1002_00466 0.75 -3.3 510,169 - MIT1002_00466 0.76 -0.1 510,197 - MIT1002_00466 0.78 -1.5 510,199 + MIT1002_00466 0.78 -3.1 510,230 - MIT1002_00466 0.81 -3.8 510,269 - MIT1002_00466 0.84 +0.5 510,285 + MIT1002_00466 0.85 -2.4 510,293 - MIT1002_00466 0.86 -2.7 510,298 + MIT1002_00466 0.86 -5.4 510,308 - MIT1002_00466 0.87 -5.4 510,323 + MIT1002_00466 0.88 -3.7 510,323 + MIT1002_00466 0.88 -6.2 510,323 + MIT1002_00466 0.88 -2.1 510,323 - MIT1002_00466 0.88 +0.5 510,331 - MIT1002_00466 0.89 -3.4 510,331 - MIT1002_00466 0.89 -2.1 510,341 - MIT1002_00466 0.89 -0.5 510,403 + -1.8 510,404 + -0.7 510,425 + -1.2 510,432 + -1.7 510,433 - -2.2 510,448 - -3.5 510,450 + -2.2 510,477 - -0.8 510,496 - -0.6 510,499 - +2.6 510,501 + -2.0 510,598 + -0.6 510,604 + -2.3 510,627 + -3.2 510,693 - MIT1002_00467 0.14 -3.6 510,698 + MIT1002_00467 0.14 -2.1 510,698 + MIT1002_00467 0.14 -1.0 510,705 - MIT1002_00467 0.15 -0.1 510,732 - MIT1002_00467 0.17 -0.7 510,732 - MIT1002_00467 0.17 -1.1 510,732 - MIT1002_00467 0.17 -4.4 510,734 + MIT1002_00467 0.17 -3.4 510,734 + MIT1002_00467 0.17 -5.0 510,734 + MIT1002_00467 0.17 -3.1 510,742 - MIT1002_00467 0.18 -1.4 510,756 - MIT1002_00467 0.19 -3.5 510,782 - MIT1002_00467 0.20 -1.1 510,804 + MIT1002_00467 0.22 -1.6 510,820 - MIT1002_00467 0.23 -1.9 510,822 - MIT1002_00467 0.23 -2.4 510,847 - MIT1002_00467 0.25 -2.8 510,946 + MIT1002_00467 0.32 -5.1 510,995 + MIT1002_00467 0.36 -3.3 511,052 + MIT1002_00467 0.40 -3.5 511,084 + MIT1002_00467 0.42 -2.1 511,092 - MIT1002_00467 0.43 +0.5 511,154 - MIT1002_00467 0.47 -1.4 511,183 + MIT1002_00467 0.49 -1.5 511,189 + MIT1002_00467 0.50 -2.8 511,189 + MIT1002_00467 0.50 -1.2 511,191 - MIT1002_00467 0.50 -3.0 511,197 - MIT1002_00467 0.50 -0.2 511,197 - MIT1002_00467 0.50 -1.3 511,200 + MIT1002_00467 0.51 -2.7 511,216 - MIT1002_00467 0.52 -0.4 511,218 - MIT1002_00467 0.52 -2.9 511,236 + MIT1002_00467 0.53 -1.1 511,293 + MIT1002_00467 0.57 -1.5 511,294 + MIT1002_00467 0.57 -3.3 511,294 + MIT1002_00467 0.57 -1.1 511,294 + MIT1002_00467 0.57 -0.8 511,302 - MIT1002_00467 0.58 -4.4 511,311 - MIT1002_00467 0.59 -0.1 511,338 + MIT1002_00467 0.61 -2.0 511,347 - MIT1002_00467 0.61 -3.2 511,372 - MIT1002_00467 0.63 -3.0 511,378 + MIT1002_00467 0.64 -2.8 511,378 - MIT1002_00467 0.64 -1.2 511,383 - MIT1002_00467 0.64 +0.5 511,398 + MIT1002_00467 0.65 -3.0 511,408 + MIT1002_00467 0.66 -1.8 511,408 + MIT1002_00467 0.66 -1.1 511,416 - MIT1002_00467 0.66 -1.5 511,424 + MIT1002_00467 0.67 -2.7 511,425 - MIT1002_00467 0.67 -3.9
Or see this region's nucleotide sequence