Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00423 and MIT1002_00424 are separated by 163 nucleotides MIT1002_00424 and MIT1002_00425 are separated by 129 nucleotides
MIT1002_00423: MIT1002_00423 - Aspartate carbamoyltransferase catalytic chain, at 457,721 to 458,734
_00423
MIT1002_00424: MIT1002_00424 - Solvent efflux pump srpABC operon corepressor, at 458,898 to 459,545
_00424
MIT1002_00425: MIT1002_00425 - Cation efflux system protein CzcB, at 459,675 to 460,814
_00425
Position (kb) 458
459
460 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1
2
3 at 457.974 kb on - strand, within MIT1002_00423 at 458.314 kb on - strand, within MIT1002_00423 at 458.314 kb on - strand, within MIT1002_00423 at 458.462 kb on - strand, within MIT1002_00423 at 458.462 kb on - strand, within MIT1002_00423 at 458.472 kb on + strand, within MIT1002_00423 at 458.480 kb on - strand, within MIT1002_00423 at 458.480 kb on - strand, within MIT1002_00423 at 458.480 kb on - strand, within MIT1002_00423 at 458.480 kb on - strand, within MIT1002_00423 at 458.480 kb on - strand, within MIT1002_00423 at 458.480 kb on - strand, within MIT1002_00423 at 458.642 kb on - strand at 458.774 kb on - strand at 458.784 kb on + strand at 458.810 kb on - strand at 458.810 kb on - strand at 458.875 kb on + strand at 458.936 kb on - strand at 458.940 kb on + strand at 458.998 kb on + strand, within MIT1002_00424 at 459.008 kb on + strand, within MIT1002_00424 at 459.016 kb on - strand, within MIT1002_00424 at 459.018 kb on - strand, within MIT1002_00424 at 459.028 kb on + strand, within MIT1002_00424 at 459.028 kb on + strand, within MIT1002_00424 at 459.028 kb on + strand, within MIT1002_00424 at 459.028 kb on + strand, within MIT1002_00424 at 459.060 kb on - strand, within MIT1002_00424 at 459.082 kb on + strand, within MIT1002_00424 at 459.086 kb on - strand, within MIT1002_00424 at 459.122 kb on - strand, within MIT1002_00424 at 459.272 kb on + strand, within MIT1002_00424 at 459.290 kb on - strand, within MIT1002_00424 at 459.316 kb on - strand, within MIT1002_00424 at 459.326 kb on + strand, within MIT1002_00424 at 459.412 kb on + strand, within MIT1002_00424 at 459.412 kb on + strand, within MIT1002_00424 at 459.418 kb on - strand, within MIT1002_00424 at 459.418 kb on - strand, within MIT1002_00424 at 459.418 kb on - strand, within MIT1002_00424 at 459.440 kb on - strand, within MIT1002_00424 at 459.600 kb on - strand at 459.619 kb on + strand at 459.638 kb on + strand at 459.646 kb on - strand at 459.649 kb on + strand at 459.659 kb on + strand at 459.667 kb on - strand at 459.671 kb on + strand at 459.680 kb on - strand at 459.827 kb on + strand, within MIT1002_00425 at 459.981 kb on + strand, within MIT1002_00425 at 459.981 kb on + strand, within MIT1002_00425 at 459.989 kb on - strand, within MIT1002_00425 at 459.989 kb on - strand, within MIT1002_00425 at 459.989 kb on - strand, within MIT1002_00425 at 460.115 kb on + strand, within MIT1002_00425 at 460.153 kb on + strand, within MIT1002_00425 at 460.161 kb on - strand, within MIT1002_00425 at 460.442 kb on + strand, within MIT1002_00425 at 460.442 kb on + strand, within MIT1002_00425 at 460.442 kb on + strand, within MIT1002_00425 at 460.442 kb on + strand, within MIT1002_00425 at 460.442 kb on + strand, within MIT1002_00425 at 460.442 kb on + strand, within MIT1002_00425 at 460.450 kb on - strand, within MIT1002_00425 at 460.510 kb on + strand, within MIT1002_00425
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6 remove 457,974 - MIT1002_00423 0.25 -1.3 458,314 - MIT1002_00423 0.58 -0.5 458,314 - MIT1002_00423 0.58 +0.1 458,462 - MIT1002_00423 0.73 +0.3 458,462 - MIT1002_00423 0.73 -3.0 458,472 + MIT1002_00423 0.74 -0.4 458,480 - MIT1002_00423 0.75 -1.3 458,480 - MIT1002_00423 0.75 -1.7 458,480 - MIT1002_00423 0.75 -1.2 458,480 - MIT1002_00423 0.75 -1.5 458,480 - MIT1002_00423 0.75 -1.9 458,480 - MIT1002_00423 0.75 -2.4 458,642 - +0.5 458,774 - -2.2 458,784 + +1.2 458,810 - +0.3 458,810 - -0.8 458,875 + +3.1 458,936 - -5.1 458,940 + -3.4 458,998 + MIT1002_00424 0.15 -1.4 459,008 + MIT1002_00424 0.17 +0.1 459,016 - MIT1002_00424 0.18 -4.4 459,018 - MIT1002_00424 0.19 +0.8 459,028 + MIT1002_00424 0.20 -1.4 459,028 + MIT1002_00424 0.20 -1.7 459,028 + MIT1002_00424 0.20 -3.3 459,028 + MIT1002_00424 0.20 -3.1 459,060 - MIT1002_00424 0.25 -1.5 459,082 + MIT1002_00424 0.28 -7.6 459,086 - MIT1002_00424 0.29 -3.2 459,122 - MIT1002_00424 0.35 -0.6 459,272 + MIT1002_00424 0.58 -1.0 459,290 - MIT1002_00424 0.60 -3.6 459,316 - MIT1002_00424 0.65 -2.0 459,326 + MIT1002_00424 0.66 -1.7 459,412 + MIT1002_00424 0.79 -2.9 459,412 + MIT1002_00424 0.79 -2.1 459,418 - MIT1002_00424 0.80 -4.3 459,418 - MIT1002_00424 0.80 -4.3 459,418 - MIT1002_00424 0.80 -0.2 459,440 - MIT1002_00424 0.84 -2.3 459,600 - +1.1 459,619 + +0.4 459,638 + +0.2 459,646 - -0.2 459,649 + +2.3 459,659 + +1.3 459,667 - -0.2 459,671 + -1.4 459,680 - +1.5 459,827 + MIT1002_00425 0.13 +0.3 459,981 + MIT1002_00425 0.27 +1.7 459,981 + MIT1002_00425 0.27 +2.3 459,989 - MIT1002_00425 0.28 -2.0 459,989 - MIT1002_00425 0.28 -0.5 459,989 - MIT1002_00425 0.28 +1.2 460,115 + MIT1002_00425 0.39 -0.8 460,153 + MIT1002_00425 0.42 -1.2 460,161 - MIT1002_00425 0.43 -0.7 460,442 + MIT1002_00425 0.67 -1.2 460,442 + MIT1002_00425 0.67 -0.2 460,442 + MIT1002_00425 0.67 -2.0 460,442 + MIT1002_00425 0.67 +1.9 460,442 + MIT1002_00425 0.67 -0.7 460,442 + MIT1002_00425 0.67 +0.9 460,450 - MIT1002_00425 0.68 +1.1 460,510 + MIT1002_00425 0.73 +0.6
Or see this region's nucleotide sequence