Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00403

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00401 and MIT1002_00402 are separated by 253 nucleotidesMIT1002_00402 and MIT1002_00403 are separated by 148 nucleotidesMIT1002_00403 and MIT1002_00404 are separated by 111 nucleotides MIT1002_00401: MIT1002_00401 - Peptidyl-dipeptidase dcp, at 430,094 to 432,283 _00401 MIT1002_00402: MIT1002_00402 - Bacterial inner membrane protein, at 432,537 to 433,055 _00402 MIT1002_00403: MIT1002_00403 - hypothetical protein, at 433,204 to 433,644 _00403 MIT1002_00404: MIT1002_00404 - Formyltetrahydrofolate deformylase, at 433,756 to 434,610 _00404 Position (kb) 433 434Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 432.208 kb on - strandat 432.222 kb on + strandat 432.298 kb on + strandat 432.298 kb on + strandat 432.306 kb on - strandat 432.418 kb on - strandat 432.447 kb on + strandat 432.447 kb on + strandat 432.447 kb on + strandat 432.447 kb on + strandat 432.447 kb on + strandat 432.447 kb on + strandat 432.455 kb on - strandat 432.455 kb on - strandat 432.455 kb on - strandat 432.455 kb on - strandat 432.500 kb on - strandat 432.500 kb on - strandat 432.519 kb on - strandat 432.605 kb on + strand, within MIT1002_00402at 432.654 kb on + strand, within MIT1002_00402at 432.679 kb on - strand, within MIT1002_00402at 432.680 kb on - strand, within MIT1002_00402at 432.705 kb on + strand, within MIT1002_00402at 432.710 kb on + strand, within MIT1002_00402at 432.876 kb on - strand, within MIT1002_00402at 432.905 kb on - strand, within MIT1002_00402at 432.905 kb on - strand, within MIT1002_00402at 432.906 kb on - strand, within MIT1002_00402at 432.906 kb on - strand, within MIT1002_00402at 432.971 kb on + strand, within MIT1002_00402at 433.022 kb on + strandat 433.088 kb on + strandat 433.101 kb on - strandat 433.103 kb on + strandat 433.133 kb on - strandat 433.170 kb on + strandat 433.212 kb on - strandat 433.241 kb on - strandat 433.251 kb on - strand, within MIT1002_00403at 433.312 kb on + strand, within MIT1002_00403at 433.312 kb on + strand, within MIT1002_00403at 433.312 kb on + strand, within MIT1002_00403at 433.312 kb on + strand, within MIT1002_00403at 433.312 kb on + strand, within MIT1002_00403at 433.312 kb on + strand, within MIT1002_00403at 433.312 kb on + strand, within MIT1002_00403at 433.312 kb on + strand, within MIT1002_00403at 433.312 kb on + strand, within MIT1002_00403at 433.312 kb on + strand, within MIT1002_00403at 433.312 kb on + strand, within MIT1002_00403at 433.320 kb on - strand, within MIT1002_00403at 433.320 kb on - strand, within MIT1002_00403at 433.320 kb on - strand, within MIT1002_00403at 433.320 kb on - strand, within MIT1002_00403at 433.320 kb on - strand, within MIT1002_00403at 433.320 kb on - strand, within MIT1002_00403at 433.320 kb on - strand, within MIT1002_00403at 433.320 kb on - strand, within MIT1002_00403at 433.320 kb on - strand, within MIT1002_00403at 433.320 kb on - strand, within MIT1002_00403at 433.320 kb on - strand, within MIT1002_00403at 433.322 kb on + strand, within MIT1002_00403at 433.322 kb on + strand, within MIT1002_00403at 433.322 kb on + strand, within MIT1002_00403at 433.322 kb on + strand, within MIT1002_00403at 433.322 kb on + strand, within MIT1002_00403at 433.322 kb on + strand, within MIT1002_00403at 433.322 kb on + strand, within MIT1002_00403at 433.322 kb on + strand, within MIT1002_00403at 433.322 kb on + strand, within MIT1002_00403at 433.322 kb on + strand, within MIT1002_00403at 433.322 kb on + strand, within MIT1002_00403at 433.322 kb on + strand, within MIT1002_00403at 433.322 kb on + strand, within MIT1002_00403at 433.322 kb on + strand, within MIT1002_00403at 433.322 kb on + strand, within MIT1002_00403at 433.322 kb on + strand, within MIT1002_00403at 433.322 kb on + strand, within MIT1002_00403at 433.322 kb on + strand, within MIT1002_00403at 433.322 kb on + strand, within MIT1002_00403at 433.322 kb on + strand, within MIT1002_00403at 433.322 kb on + strand, within MIT1002_00403at 433.329 kb on + strand, within MIT1002_00403at 433.329 kb on + strand, within MIT1002_00403at 433.330 kb on - strand, within MIT1002_00403at 433.330 kb on - strand, within MIT1002_00403at 433.330 kb on - strand, within MIT1002_00403at 433.330 kb on - strand, within MIT1002_00403at 433.330 kb on - strand, within MIT1002_00403at 433.330 kb on - strand, within MIT1002_00403at 433.330 kb on - strand, within MIT1002_00403at 433.330 kb on - strand, within MIT1002_00403at 433.330 kb on - strand, within MIT1002_00403at 433.330 kb on - strand, within MIT1002_00403at 433.330 kb on - strand, within MIT1002_00403at 433.330 kb on - strand, within MIT1002_00403at 433.330 kb on - strand, within MIT1002_00403at 433.330 kb on - strand, within MIT1002_00403at 433.330 kb on - strand, within MIT1002_00403at 433.330 kb on - strand, within MIT1002_00403at 433.330 kb on - strand, within MIT1002_00403at 433.330 kb on - strand, within MIT1002_00403at 433.330 kb on - strand, within MIT1002_00403at 433.330 kb on - strand, within MIT1002_00403at 433.330 kb on - strand, within MIT1002_00403at 433.330 kb on - strand, within MIT1002_00403at 433.330 kb on - strand, within MIT1002_00403at 433.330 kb on - strand, within MIT1002_00403at 433.457 kb on + strand, within MIT1002_00403at 433.457 kb on + strand, within MIT1002_00403at 433.465 kb on - strand, within MIT1002_00403at 433.465 kb on - strand, within MIT1002_00403at 433.478 kb on - strand, within MIT1002_00403at 433.478 kb on - strand, within MIT1002_00403at 433.508 kb on + strand, within MIT1002_00403at 433.536 kb on + strand, within MIT1002_00403at 433.536 kb on + strand, within MIT1002_00403at 433.537 kb on + strand, within MIT1002_00403at 433.545 kb on - strand, within MIT1002_00403at 433.608 kb on - strandat 433.623 kb on - strandat 433.808 kb on - strandat 433.815 kb on - strandat 433.863 kb on + strand, within MIT1002_00404at 433.877 kb on + strand, within MIT1002_00404at 433.885 kb on - strand, within MIT1002_00404at 433.896 kb on + strand, within MIT1002_00404at 433.904 kb on - strand, within MIT1002_00404at 433.909 kb on - strand, within MIT1002_00404at 433.913 kb on + strand, within MIT1002_00404at 433.968 kb on + strand, within MIT1002_00404at 433.981 kb on + strand, within MIT1002_00404at 434.001 kb on + strand, within MIT1002_00404at 434.008 kb on - strand, within MIT1002_00404at 434.047 kb on + strand, within MIT1002_00404at 434.177 kb on + strand, within MIT1002_00404at 434.213 kb on - strand, within MIT1002_00404at 434.259 kb on + strand, within MIT1002_00404at 434.264 kb on + strand, within MIT1002_00404at 434.274 kb on + strand, within MIT1002_00404at 434.279 kb on - strand, within MIT1002_00404at 434.301 kb on + strand, within MIT1002_00404at 434.340 kb on - strand, within MIT1002_00404at 434.378 kb on - strand, within MIT1002_00404at 434.378 kb on - strand, within MIT1002_00404at 434.422 kb on + strand, within MIT1002_00404at 434.430 kb on - strand, within MIT1002_00404at 434.571 kb on + strandat 434.581 kb on + strandat 434.581 kb on + strandat 434.589 kb on - strandat 434.641 kb on + strandat 434.641 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6
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432,208 - -2.5
432,222 + -1.2
432,298 + -0.4
432,298 + -1.3
432,306 - +0.3
432,418 - -1.5
432,447 + +3.4
432,447 + +2.4
432,447 + +1.3
432,447 + -0.8
432,447 + -0.1
432,447 + -0.8
432,455 - +0.2
432,455 - -0.7
432,455 - +1.2
432,455 - -0.5
432,500 - +0.2
432,500 - +0.6
432,519 - +1.7
432,605 + MIT1002_00402 0.13 +0.7
432,654 + MIT1002_00402 0.23 -0.5
432,679 - MIT1002_00402 0.27 +1.2
432,680 - MIT1002_00402 0.28 -0.3
432,705 + MIT1002_00402 0.32 -0.5
432,710 + MIT1002_00402 0.33 +1.0
432,876 - MIT1002_00402 0.65 +2.8
432,905 - MIT1002_00402 0.71 +1.1
432,905 - MIT1002_00402 0.71 +0.5
432,906 - MIT1002_00402 0.71 +0.0
432,906 - MIT1002_00402 0.71 -0.1
432,971 + MIT1002_00402 0.84 -0.3
433,022 + -0.9
433,088 + +1.2
433,101 - +0.1
433,103 + +1.3
433,133 - +1.3
433,170 + +0.2
433,212 - +2.4
433,241 - +0.3
433,251 - MIT1002_00403 0.11 -0.2
433,312 + MIT1002_00403 0.24 +1.0
433,312 + MIT1002_00403 0.24 +1.4
433,312 + MIT1002_00403 0.24 -2.2
433,312 + MIT1002_00403 0.24 +0.5
433,312 + MIT1002_00403 0.24 +0.7
433,312 + MIT1002_00403 0.24 -0.6
433,312 + MIT1002_00403 0.24 -0.7
433,312 + MIT1002_00403 0.24 +0.3
433,312 + MIT1002_00403 0.24 +0.1
433,312 + MIT1002_00403 0.24 +2.5
433,312 + MIT1002_00403 0.24 -0.9
433,320 - MIT1002_00403 0.26 -0.4
433,320 - MIT1002_00403 0.26 -0.6
433,320 - MIT1002_00403 0.26 -1.1
433,320 - MIT1002_00403 0.26 -1.5
433,320 - MIT1002_00403 0.26 -0.2
433,320 - MIT1002_00403 0.26 -0.4
433,320 - MIT1002_00403 0.26 -3.1
433,320 - MIT1002_00403 0.26 -1.7
433,320 - MIT1002_00403 0.26 -2.2
433,320 - MIT1002_00403 0.26 -0.7
433,320 - MIT1002_00403 0.26 -1.8
433,322 + MIT1002_00403 0.27 +0.7
433,322 + MIT1002_00403 0.27 +0.7
433,322 + MIT1002_00403 0.27 +0.7
433,322 + MIT1002_00403 0.27 -2.9
433,322 + MIT1002_00403 0.27 +0.7
433,322 + MIT1002_00403 0.27 +0.8
433,322 + MIT1002_00403 0.27 +2.5
433,322 + MIT1002_00403 0.27 -1.6
433,322 + MIT1002_00403 0.27 -0.7
433,322 + MIT1002_00403 0.27 +1.6
433,322 + MIT1002_00403 0.27 +0.3
433,322 + MIT1002_00403 0.27 +0.7
433,322 + MIT1002_00403 0.27 -0.7
433,322 + MIT1002_00403 0.27 +0.3
433,322 + MIT1002_00403 0.27 -1.4
433,322 + MIT1002_00403 0.27 +1.7
433,322 + MIT1002_00403 0.27 -2.5
433,322 + MIT1002_00403 0.27 -0.7
433,322 + MIT1002_00403 0.27 +1.3
433,322 + MIT1002_00403 0.27 -1.6
433,322 + MIT1002_00403 0.27 -0.0
433,329 + MIT1002_00403 0.28 -0.3
433,329 + MIT1002_00403 0.28 -0.5
433,330 - MIT1002_00403 0.29 +0.2
433,330 - MIT1002_00403 0.29 +2.9
433,330 - MIT1002_00403 0.29 -0.3
433,330 - MIT1002_00403 0.29 -1.2
433,330 - MIT1002_00403 0.29 -0.6
433,330 - MIT1002_00403 0.29 -1.1
433,330 - MIT1002_00403 0.29 -0.5
433,330 - MIT1002_00403 0.29 +0.6
433,330 - MIT1002_00403 0.29 -1.8
433,330 - MIT1002_00403 0.29 -0.9
433,330 - MIT1002_00403 0.29 -0.7
433,330 - MIT1002_00403 0.29 -0.8
433,330 - MIT1002_00403 0.29 -1.1
433,330 - MIT1002_00403 0.29 +0.5
433,330 - MIT1002_00403 0.29 -0.5
433,330 - MIT1002_00403 0.29 +0.2
433,330 - MIT1002_00403 0.29 -1.4
433,330 - MIT1002_00403 0.29 +0.3
433,330 - MIT1002_00403 0.29 -0.6
433,330 - MIT1002_00403 0.29 +0.3
433,330 - MIT1002_00403 0.29 -0.4
433,330 - MIT1002_00403 0.29 -0.2
433,330 - MIT1002_00403 0.29 -2.1
433,330 - MIT1002_00403 0.29 -1.3
433,457 + MIT1002_00403 0.57 -1.0
433,457 + MIT1002_00403 0.57 -0.4
433,465 - MIT1002_00403 0.59 +2.3
433,465 - MIT1002_00403 0.59 -1.2
433,478 - MIT1002_00403 0.62 +0.5
433,478 - MIT1002_00403 0.62 +0.2
433,508 + MIT1002_00403 0.69 +0.7
433,536 + MIT1002_00403 0.75 -0.7
433,536 + MIT1002_00403 0.75 -0.1
433,537 + MIT1002_00403 0.76 +3.7
433,545 - MIT1002_00403 0.77 -2.0
433,608 - +0.3
433,623 - +0.7
433,808 - -0.5
433,815 - -2.7
433,863 + MIT1002_00404 0.13 +1.0
433,877 + MIT1002_00404 0.14 -1.6
433,885 - MIT1002_00404 0.15 -0.9
433,896 + MIT1002_00404 0.16 -0.7
433,904 - MIT1002_00404 0.17 -0.6
433,909 - MIT1002_00404 0.18 -0.2
433,913 + MIT1002_00404 0.18 -1.6
433,968 + MIT1002_00404 0.25 -0.9
433,981 + MIT1002_00404 0.26 -1.1
434,001 + MIT1002_00404 0.29 -0.1
434,008 - MIT1002_00404 0.29 +0.7
434,047 + MIT1002_00404 0.34 +0.6
434,177 + MIT1002_00404 0.49 -0.7
434,213 - MIT1002_00404 0.53 +0.5
434,259 + MIT1002_00404 0.59 -1.9
434,264 + MIT1002_00404 0.59 -1.1
434,274 + MIT1002_00404 0.61 +1.7
434,279 - MIT1002_00404 0.61 -0.1
434,301 + MIT1002_00404 0.64 -3.3
434,340 - MIT1002_00404 0.68 -0.6
434,378 - MIT1002_00404 0.73 -0.1
434,378 - MIT1002_00404 0.73 +0.2
434,422 + MIT1002_00404 0.78 +0.1
434,430 - MIT1002_00404 0.79 -0.9
434,571 + +0.1
434,581 + +1.1
434,581 + +0.4
434,589 - -0.6
434,641 + +0.1
434,641 + -0.5

Or see this region's nucleotide sequence