Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00377

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00375 and MIT1002_00376 are separated by 138 nucleotidesMIT1002_00376 and MIT1002_00377 are separated by 455 nucleotidesMIT1002_00377 and MIT1002_00378 are separated by 66 nucleotidesMIT1002_00378 and MIT1002_00379 are separated by 177 nucleotides MIT1002_00375: MIT1002_00375 - 23S ribosomal RNA, at 403,891 to 406,764 _00375 MIT1002_00376: MIT1002_00376 - 5S ribosomal RNA, at 406,903 to 407,017 _00376 MIT1002_00377: MIT1002_00377 - Branched-chain-amino-acid aminotransferase 2, at 407,473 to 408,474 _00377 MIT1002_00378: MIT1002_00378 - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase, at 408,541 to 409,287 _00378 MIT1002_00379: MIT1002_00379 - hypothetical protein, at 409,465 to 409,926 _00379 Position (kb) 407 408 409Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 407.087 kb on + strandat 407.139 kb on + strandat 407.167 kb on + strandat 407.175 kb on - strandat 407.175 kb on - strandat 407.183 kb on - strandat 407.196 kb on + strandat 407.222 kb on + strandat 407.458 kb on + strandat 407.574 kb on + strand, within MIT1002_00377at 407.588 kb on - strand, within MIT1002_00377at 407.703 kb on - strand, within MIT1002_00377at 407.708 kb on - strand, within MIT1002_00377at 407.866 kb on - strand, within MIT1002_00377at 407.962 kb on + strand, within MIT1002_00377at 407.970 kb on - strand, within MIT1002_00377at 408.015 kb on - strand, within MIT1002_00377at 408.176 kb on + strand, within MIT1002_00377at 408.183 kb on - strand, within MIT1002_00377at 408.218 kb on + strand, within MIT1002_00377at 408.228 kb on + strand, within MIT1002_00377at 408.256 kb on + strand, within MIT1002_00377at 408.269 kb on + strand, within MIT1002_00377at 408.269 kb on + strand, within MIT1002_00377at 408.305 kb on - strand, within MIT1002_00377at 408.305 kb on - strand, within MIT1002_00377at 408.434 kb on - strandat 408.442 kb on + strandat 408.554 kb on - strandat 409.405 kb on + strandat 409.428 kb on + strandat 409.436 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6
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407,087 + +0.3
407,139 + -0.5
407,167 + +0.1
407,175 - +1.2
407,175 - -2.2
407,183 - +0.3
407,196 + -1.0
407,222 + -1.0
407,458 + +0.3
407,574 + MIT1002_00377 0.10 -0.4
407,588 - MIT1002_00377 0.11 -4.5
407,703 - MIT1002_00377 0.23 -4.9
407,708 - MIT1002_00377 0.23 -4.1
407,866 - MIT1002_00377 0.39 -2.0
407,962 + MIT1002_00377 0.49 -6.6
407,970 - MIT1002_00377 0.50 -1.0
408,015 - MIT1002_00377 0.54 -1.8
408,176 + MIT1002_00377 0.70 -1.0
408,183 - MIT1002_00377 0.71 -5.2
408,218 + MIT1002_00377 0.74 -1.7
408,228 + MIT1002_00377 0.75 -2.2
408,256 + MIT1002_00377 0.78 -1.7
408,269 + MIT1002_00377 0.79 -1.6
408,269 + MIT1002_00377 0.79 -6.9
408,305 - MIT1002_00377 0.83 -2.2
408,305 - MIT1002_00377 0.83 +0.1
408,434 - -2.8
408,442 + -1.3
408,554 - -1.1
409,405 + +0.7
409,428 + +0.4
409,436 - -0.2

Or see this region's nucleotide sequence