Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00353

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00352 and MIT1002_00353 are separated by 2 nucleotidesMIT1002_00353 and MIT1002_00354 are separated by 70 nucleotides MIT1002_00352: MIT1002_00352 - putative transporter, at 378,037 to 379,275 _00352 MIT1002_00353: MIT1002_00353 - Cytoplasmic trehalase, at 379,278 to 380,801 _00353 MIT1002_00354: MIT1002_00354 - Diguanylate cyclase DosC, at 380,872 to 382,671 _00354 Position (kb) 379 380 381Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 378.339 kb on + strand, within MIT1002_00352at 378.491 kb on + strand, within MIT1002_00352at 378.645 kb on - strand, within MIT1002_00352at 378.651 kb on + strand, within MIT1002_00352at 378.658 kb on - strand, within MIT1002_00352at 378.676 kb on + strand, within MIT1002_00352at 378.678 kb on - strand, within MIT1002_00352at 378.678 kb on - strand, within MIT1002_00352at 378.678 kb on - strand, within MIT1002_00352at 378.718 kb on + strand, within MIT1002_00352at 378.723 kb on + strand, within MIT1002_00352at 378.731 kb on - strand, within MIT1002_00352at 378.731 kb on - strand, within MIT1002_00352at 378.760 kb on + strand, within MIT1002_00352at 378.768 kb on - strand, within MIT1002_00352at 378.768 kb on - strand, within MIT1002_00352at 378.783 kb on - strand, within MIT1002_00352at 378.820 kb on + strand, within MIT1002_00352at 378.847 kb on + strand, within MIT1002_00352at 378.847 kb on + strand, within MIT1002_00352at 378.847 kb on + strand, within MIT1002_00352at 378.847 kb on + strand, within MIT1002_00352at 378.855 kb on - strand, within MIT1002_00352at 378.855 kb on - strand, within MIT1002_00352at 378.903 kb on - strand, within MIT1002_00352at 378.905 kb on + strand, within MIT1002_00352at 378.913 kb on - strand, within MIT1002_00352at 378.920 kb on + strand, within MIT1002_00352at 378.928 kb on - strand, within MIT1002_00352at 378.983 kb on - strand, within MIT1002_00352at 379.023 kb on + strand, within MIT1002_00352at 379.023 kb on + strand, within MIT1002_00352at 379.031 kb on - strand, within MIT1002_00352at 379.031 kb on - strand, within MIT1002_00352at 379.031 kb on - strand, within MIT1002_00352at 379.031 kb on - strand, within MIT1002_00352at 379.031 kb on - strand, within MIT1002_00352at 379.033 kb on + strand, within MIT1002_00352at 379.033 kb on + strand, within MIT1002_00352at 379.041 kb on - strand, within MIT1002_00352at 379.041 kb on - strand, within MIT1002_00352at 379.041 kb on - strand, within MIT1002_00352at 379.050 kb on + strand, within MIT1002_00352at 379.116 kb on + strand, within MIT1002_00352at 379.144 kb on + strand, within MIT1002_00352at 379.144 kb on + strand, within MIT1002_00352at 379.219 kb on + strandat 379.219 kb on + strandat 379.257 kb on + strandat 379.257 kb on + strandat 379.257 kb on + strandat 379.257 kb on + strandat 379.257 kb on + strandat 379.257 kb on + strandat 379.265 kb on - strandat 379.265 kb on - strandat 379.265 kb on - strandat 379.265 kb on - strandat 379.265 kb on - strandat 379.265 kb on - strandat 379.265 kb on - strandat 379.334 kb on + strandat 379.342 kb on - strandat 379.342 kb on - strandat 379.414 kb on - strandat 379.438 kb on - strand, within MIT1002_00353at 379.579 kb on - strand, within MIT1002_00353at 379.579 kb on - strand, within MIT1002_00353at 379.637 kb on + strand, within MIT1002_00353at 379.645 kb on - strand, within MIT1002_00353at 379.650 kb on - strand, within MIT1002_00353at 379.737 kb on + strand, within MIT1002_00353at 379.834 kb on - strand, within MIT1002_00353at 379.856 kb on + strand, within MIT1002_00353at 380.004 kb on + strand, within MIT1002_00353at 380.079 kb on - strand, within MIT1002_00353at 380.081 kb on - strand, within MIT1002_00353at 380.136 kb on + strand, within MIT1002_00353at 380.144 kb on - strand, within MIT1002_00353at 380.268 kb on - strand, within MIT1002_00353at 380.268 kb on - strand, within MIT1002_00353at 380.270 kb on + strand, within MIT1002_00353at 380.304 kb on + strand, within MIT1002_00353at 380.312 kb on - strand, within MIT1002_00353at 380.472 kb on - strand, within MIT1002_00353at 380.500 kb on + strand, within MIT1002_00353at 380.531 kb on + strand, within MIT1002_00353at 380.546 kb on + strand, within MIT1002_00353at 380.583 kb on - strand, within MIT1002_00353at 380.620 kb on + strand, within MIT1002_00353at 380.747 kb on - strandat 380.764 kb on - strandat 380.764 kb on - strandat 380.893 kb on + strandat 380.896 kb on - strandat 380.971 kb on + strandat 380.993 kb on - strandat 381.019 kb on + strandat 381.025 kb on + strandat 381.025 kb on + strandat 381.033 kb on - strandat 381.033 kb on - strandat 381.037 kb on - strandat 381.065 kb on - strand, within MIT1002_00354at 381.261 kb on - strand, within MIT1002_00354at 381.298 kb on + strand, within MIT1002_00354at 381.308 kb on + strand, within MIT1002_00354at 381.316 kb on - strand, within MIT1002_00354at 381.329 kb on + strand, within MIT1002_00354at 381.366 kb on + strand, within MIT1002_00354at 381.375 kb on + strand, within MIT1002_00354at 381.497 kb on + strand, within MIT1002_00354at 381.497 kb on + strand, within MIT1002_00354at 381.497 kb on + strand, within MIT1002_00354at 381.497 kb on + strand, within MIT1002_00354at 381.505 kb on - strand, within MIT1002_00354at 381.577 kb on - strand, within MIT1002_00354at 381.588 kb on - strand, within MIT1002_00354at 381.597 kb on - strand, within MIT1002_00354at 381.602 kb on - strand, within MIT1002_00354at 381.612 kb on + strand, within MIT1002_00354at 381.612 kb on + strand, within MIT1002_00354at 381.654 kb on - strand, within MIT1002_00354at 381.667 kb on + strand, within MIT1002_00354at 381.672 kb on + strand, within MIT1002_00354at 381.696 kb on + strand, within MIT1002_00354at 381.706 kb on + strand, within MIT1002_00354at 381.706 kb on + strand, within MIT1002_00354

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6
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378,339 + MIT1002_00352 0.24 -0.1
378,491 + MIT1002_00352 0.37 -2.5
378,645 - MIT1002_00352 0.49 +0.0
378,651 + MIT1002_00352 0.50 -1.9
378,658 - MIT1002_00352 0.50 -1.5
378,676 + MIT1002_00352 0.52 +2.7
378,678 - MIT1002_00352 0.52 +0.8
378,678 - MIT1002_00352 0.52 +0.3
378,678 - MIT1002_00352 0.52 -0.4
378,718 + MIT1002_00352 0.55 +0.3
378,723 + MIT1002_00352 0.55 -0.3
378,731 - MIT1002_00352 0.56 +0.5
378,731 - MIT1002_00352 0.56 -0.7
378,760 + MIT1002_00352 0.58 -2.5
378,768 - MIT1002_00352 0.59 -1.3
378,768 - MIT1002_00352 0.59 +1.8
378,783 - MIT1002_00352 0.60 -2.1
378,820 + MIT1002_00352 0.63 +1.8
378,847 + MIT1002_00352 0.65 +1.1
378,847 + MIT1002_00352 0.65 +1.0
378,847 + MIT1002_00352 0.65 +0.1
378,847 + MIT1002_00352 0.65 -0.3
378,855 - MIT1002_00352 0.66 -0.8
378,855 - MIT1002_00352 0.66 -0.8
378,903 - MIT1002_00352 0.70 +1.6
378,905 + MIT1002_00352 0.70 -1.0
378,913 - MIT1002_00352 0.71 -0.9
378,920 + MIT1002_00352 0.71 -1.1
378,928 - MIT1002_00352 0.72 +1.0
378,983 - MIT1002_00352 0.76 -0.6
379,023 + MIT1002_00352 0.80 -0.6
379,023 + MIT1002_00352 0.80 -2.7
379,031 - MIT1002_00352 0.80 -0.2
379,031 - MIT1002_00352 0.80 +0.8
379,031 - MIT1002_00352 0.80 -0.6
379,031 - MIT1002_00352 0.80 -1.3
379,031 - MIT1002_00352 0.80 -2.0
379,033 + MIT1002_00352 0.80 -1.3
379,033 + MIT1002_00352 0.80 +0.0
379,041 - MIT1002_00352 0.81 +0.4
379,041 - MIT1002_00352 0.81 -2.8
379,041 - MIT1002_00352 0.81 -0.5
379,050 + MIT1002_00352 0.82 +0.7
379,116 + MIT1002_00352 0.87 -1.6
379,144 + MIT1002_00352 0.89 -1.1
379,144 + MIT1002_00352 0.89 +1.0
379,219 + -1.8
379,219 + -1.7
379,257 + -2.4
379,257 + +1.6
379,257 + +1.0
379,257 + -0.7
379,257 + +0.7
379,257 + +0.1
379,265 - +0.9
379,265 - +1.1
379,265 - -0.1
379,265 - +1.2
379,265 - +0.3
379,265 - -0.6
379,265 - -0.6
379,334 + -1.2
379,342 - -3.6
379,342 - -3.0
379,414 - -3.7
379,438 - MIT1002_00353 0.10 -2.2
379,579 - MIT1002_00353 0.20 -2.8
379,579 - MIT1002_00353 0.20 -2.3
379,637 + MIT1002_00353 0.24 -0.6
379,645 - MIT1002_00353 0.24 -2.1
379,650 - MIT1002_00353 0.24 -2.5
379,737 + MIT1002_00353 0.30 -2.8
379,834 - MIT1002_00353 0.36 -2.7
379,856 + MIT1002_00353 0.38 -3.6
380,004 + MIT1002_00353 0.48 -0.4
380,079 - MIT1002_00353 0.53 -0.3
380,081 - MIT1002_00353 0.53 -0.7
380,136 + MIT1002_00353 0.56 -2.0
380,144 - MIT1002_00353 0.57 -2.1
380,268 - MIT1002_00353 0.65 -2.2
380,268 - MIT1002_00353 0.65 -2.6
380,270 + MIT1002_00353 0.65 +0.7
380,304 + MIT1002_00353 0.67 -1.7
380,312 - MIT1002_00353 0.68 -1.0
380,472 - MIT1002_00353 0.78 -2.3
380,500 + MIT1002_00353 0.80 -2.7
380,531 + MIT1002_00353 0.82 -1.4
380,546 + MIT1002_00353 0.83 -3.0
380,583 - MIT1002_00353 0.86 -1.3
380,620 + MIT1002_00353 0.88 -2.0
380,747 - -1.6
380,764 - -2.1
380,764 - -2.5
380,893 + -1.7
380,896 - -1.0
380,971 + +0.1
380,993 - -0.4
381,019 + +1.5
381,025 + -1.0
381,025 + -0.7
381,033 - -0.2
381,033 - +0.7
381,037 - +0.4
381,065 - MIT1002_00354 0.11 +1.2
381,261 - MIT1002_00354 0.22 +0.4
381,298 + MIT1002_00354 0.24 +0.2
381,308 + MIT1002_00354 0.24 +1.8
381,316 - MIT1002_00354 0.25 +0.7
381,329 + MIT1002_00354 0.25 -0.9
381,366 + MIT1002_00354 0.27 -2.6
381,375 + MIT1002_00354 0.28 -2.7
381,497 + MIT1002_00354 0.35 -0.5
381,497 + MIT1002_00354 0.35 +0.2
381,497 + MIT1002_00354 0.35 +0.1
381,497 + MIT1002_00354 0.35 +0.0
381,505 - MIT1002_00354 0.35 +0.5
381,577 - MIT1002_00354 0.39 -0.2
381,588 - MIT1002_00354 0.40 -2.1
381,597 - MIT1002_00354 0.40 +2.5
381,602 - MIT1002_00354 0.41 -0.3
381,612 + MIT1002_00354 0.41 -1.0
381,612 + MIT1002_00354 0.41 -2.1
381,654 - MIT1002_00354 0.43 +0.1
381,667 + MIT1002_00354 0.44 +0.2
381,672 + MIT1002_00354 0.44 -1.0
381,696 + MIT1002_00354 0.46 -0.1
381,706 + MIT1002_00354 0.46 +0.2
381,706 + MIT1002_00354 0.46 +0.5

Or see this region's nucleotide sequence