Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00351

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00349 and MIT1002_00350 are separated by 126 nucleotidesMIT1002_00350 and MIT1002_00351 overlap by 20 nucleotidesMIT1002_00351 and MIT1002_00352 are separated by 166 nucleotides MIT1002_00349: MIT1002_00349 - hypothetical protein, at 374,270 to 376,528 _00349 MIT1002_00350: MIT1002_00350 - hypothetical protein, at 376,655 to 376,855 _00350 MIT1002_00351: MIT1002_00351 - Degradation activator, at 376,836 to 377,870 _00351 MIT1002_00352: MIT1002_00352 - putative transporter, at 378,037 to 379,275 _00352 Position (kb) 376 377 378Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 375.853 kb on - strand, within MIT1002_00349at 375.888 kb on - strand, within MIT1002_00349at 375.904 kb on + strand, within MIT1002_00349at 375.959 kb on + strand, within MIT1002_00349at 376.014 kb on - strand, within MIT1002_00349at 376.063 kb on + strand, within MIT1002_00349at 376.070 kb on + strand, within MIT1002_00349at 376.071 kb on - strand, within MIT1002_00349at 376.077 kb on - strand, within MIT1002_00349at 376.078 kb on - strand, within MIT1002_00349at 376.089 kb on + strand, within MIT1002_00349at 376.140 kb on + strand, within MIT1002_00349at 376.148 kb on - strand, within MIT1002_00349at 376.161 kb on + strand, within MIT1002_00349at 376.169 kb on - strand, within MIT1002_00349at 376.183 kb on - strand, within MIT1002_00349at 376.196 kb on + strand, within MIT1002_00349at 376.208 kb on + strand, within MIT1002_00349at 376.287 kb on + strand, within MIT1002_00349at 376.287 kb on + strand, within MIT1002_00349at 376.386 kb on + strandat 376.396 kb on + strandat 376.471 kb on + strandat 376.471 kb on + strandat 376.471 kb on + strandat 376.479 kb on - strandat 376.479 kb on - strandat 376.485 kb on - strandat 376.486 kb on + strandat 376.566 kb on - strandat 376.602 kb on - strandat 376.722 kb on + strand, within MIT1002_00350at 376.772 kb on + strand, within MIT1002_00350at 376.780 kb on - strand, within MIT1002_00350at 376.860 kb on + strandat 376.870 kb on + strandat 376.911 kb on - strandat 376.963 kb on + strand, within MIT1002_00351at 376.983 kb on + strand, within MIT1002_00351at 377.061 kb on - strand, within MIT1002_00351at 377.066 kb on + strand, within MIT1002_00351at 377.076 kb on + strand, within MIT1002_00351at 377.086 kb on + strand, within MIT1002_00351at 377.091 kb on - strand, within MIT1002_00351at 377.094 kb on - strand, within MIT1002_00351at 377.119 kb on + strand, within MIT1002_00351at 377.152 kb on + strand, within MIT1002_00351at 377.218 kb on - strand, within MIT1002_00351at 377.233 kb on - strand, within MIT1002_00351at 377.246 kb on + strand, within MIT1002_00351at 377.254 kb on - strand, within MIT1002_00351at 377.306 kb on - strand, within MIT1002_00351at 377.365 kb on + strand, within MIT1002_00351at 377.425 kb on + strand, within MIT1002_00351at 377.460 kb on + strand, within MIT1002_00351at 377.468 kb on - strand, within MIT1002_00351at 377.468 kb on - strand, within MIT1002_00351at 377.468 kb on - strand, within MIT1002_00351at 377.468 kb on - strand, within MIT1002_00351at 377.483 kb on - strand, within MIT1002_00351at 377.518 kb on + strand, within MIT1002_00351at 377.526 kb on - strand, within MIT1002_00351at 377.648 kb on + strand, within MIT1002_00351at 377.648 kb on + strand, within MIT1002_00351at 377.648 kb on + strand, within MIT1002_00351at 377.651 kb on + strand, within MIT1002_00351at 377.703 kb on - strand, within MIT1002_00351at 377.831 kb on - strandat 377.833 kb on + strandat 377.848 kb on + strandat 377.848 kb on + strandat 377.848 kb on + strandat 377.848 kb on + strandat 377.848 kb on + strandat 377.848 kb on + strandat 377.848 kb on + strandat 377.853 kb on + strandat 377.853 kb on + strandat 377.854 kb on - strandat 377.856 kb on - strandat 377.856 kb on - strandat 377.856 kb on - strandat 377.856 kb on - strandat 377.858 kb on + strandat 377.995 kb on + strandat 378.006 kb on - strandat 378.008 kb on + strandat 378.030 kb on - strandat 378.094 kb on + strandat 378.094 kb on + strandat 378.094 kb on + strandat 378.096 kb on + strandat 378.096 kb on + strandat 378.102 kb on - strandat 378.102 kb on - strandat 378.104 kb on + strandat 378.113 kb on + strandat 378.194 kb on - strand, within MIT1002_00352at 378.339 kb on + strand, within MIT1002_00352at 378.491 kb on + strand, within MIT1002_00352at 378.645 kb on - strand, within MIT1002_00352at 378.651 kb on + strand, within MIT1002_00352at 378.658 kb on - strand, within MIT1002_00352at 378.676 kb on + strand, within MIT1002_00352at 378.678 kb on - strand, within MIT1002_00352at 378.678 kb on - strand, within MIT1002_00352at 378.678 kb on - strand, within MIT1002_00352at 378.718 kb on + strand, within MIT1002_00352at 378.723 kb on + strand, within MIT1002_00352at 378.731 kb on - strand, within MIT1002_00352at 378.731 kb on - strand, within MIT1002_00352at 378.760 kb on + strand, within MIT1002_00352at 378.768 kb on - strand, within MIT1002_00352at 378.768 kb on - strand, within MIT1002_00352at 378.783 kb on - strand, within MIT1002_00352at 378.820 kb on + strand, within MIT1002_00352at 378.847 kb on + strand, within MIT1002_00352at 378.847 kb on + strand, within MIT1002_00352at 378.847 kb on + strand, within MIT1002_00352at 378.847 kb on + strand, within MIT1002_00352at 378.855 kb on - strand, within MIT1002_00352at 378.855 kb on - strand, within MIT1002_00352

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6
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375,853 - MIT1002_00349 0.70 +0.7
375,888 - MIT1002_00349 0.72 -0.5
375,904 + MIT1002_00349 0.72 +1.2
375,959 + MIT1002_00349 0.75 +1.0
376,014 - MIT1002_00349 0.77 +0.1
376,063 + MIT1002_00349 0.79 -3.8
376,070 + MIT1002_00349 0.80 -0.9
376,071 - MIT1002_00349 0.80 +1.3
376,077 - MIT1002_00349 0.80 -0.3
376,078 - MIT1002_00349 0.80 +1.2
376,089 + MIT1002_00349 0.81 +1.3
376,140 + MIT1002_00349 0.83 +0.1
376,148 - MIT1002_00349 0.83 +1.9
376,161 + MIT1002_00349 0.84 -0.6
376,169 - MIT1002_00349 0.84 -1.6
376,183 - MIT1002_00349 0.85 -0.3
376,196 + MIT1002_00349 0.85 -1.3
376,208 + MIT1002_00349 0.86 -0.7
376,287 + MIT1002_00349 0.89 +1.2
376,287 + MIT1002_00349 0.89 +1.2
376,386 + -0.1
376,396 + +0.7
376,471 + -0.3
376,471 + +0.7
376,471 + +1.1
376,479 - -0.3
376,479 - +0.8
376,485 - -0.4
376,486 + -1.8
376,566 - -0.5
376,602 - +0.9
376,722 + MIT1002_00350 0.33 +0.6
376,772 + MIT1002_00350 0.58 -3.0
376,780 - MIT1002_00350 0.62 -2.3
376,860 + -2.1
376,870 + -3.5
376,911 - -1.1
376,963 + MIT1002_00351 0.12 -3.9
376,983 + MIT1002_00351 0.14 -2.9
377,061 - MIT1002_00351 0.22 -2.7
377,066 + MIT1002_00351 0.22 -3.1
377,076 + MIT1002_00351 0.23 -3.4
377,086 + MIT1002_00351 0.24 -3.6
377,091 - MIT1002_00351 0.25 -3.8
377,094 - MIT1002_00351 0.25 -2.3
377,119 + MIT1002_00351 0.27 -3.1
377,152 + MIT1002_00351 0.31 -4.8
377,218 - MIT1002_00351 0.37 -2.0
377,233 - MIT1002_00351 0.38 -3.0
377,246 + MIT1002_00351 0.40 -4.0
377,254 - MIT1002_00351 0.40 -0.8
377,306 - MIT1002_00351 0.45 -3.4
377,365 + MIT1002_00351 0.51 -2.6
377,425 + MIT1002_00351 0.57 -2.8
377,460 + MIT1002_00351 0.60 -4.3
377,468 - MIT1002_00351 0.61 -3.6
377,468 - MIT1002_00351 0.61 -4.0
377,468 - MIT1002_00351 0.61 -0.9
377,468 - MIT1002_00351 0.61 -4.1
377,483 - MIT1002_00351 0.63 -6.0
377,518 + MIT1002_00351 0.66 -1.6
377,526 - MIT1002_00351 0.67 -2.0
377,648 + MIT1002_00351 0.78 -4.2
377,648 + MIT1002_00351 0.78 -4.4
377,648 + MIT1002_00351 0.78 -3.7
377,651 + MIT1002_00351 0.79 -2.4
377,703 - MIT1002_00351 0.84 -1.8
377,831 - -2.2
377,833 + -1.3
377,848 + -1.5
377,848 + +1.1
377,848 + -1.2
377,848 + -3.0
377,848 + -0.3
377,848 + +0.8
377,848 + -0.1
377,853 + -2.9
377,853 + -1.0
377,854 - -3.9
377,856 - -0.5
377,856 - +0.1
377,856 - -1.8
377,856 - -3.0
377,858 + -2.4
377,995 + +0.8
378,006 - -2.1
378,008 + -0.8
378,030 - +0.3
378,094 + -1.8
378,094 + +1.4
378,094 + +2.0
378,096 + -2.4
378,096 + +0.8
378,102 - -0.6
378,102 - +0.1
378,104 + -2.1
378,113 + +0.6
378,194 - MIT1002_00352 0.13 -0.5
378,339 + MIT1002_00352 0.24 -0.1
378,491 + MIT1002_00352 0.37 -2.5
378,645 - MIT1002_00352 0.49 +0.0
378,651 + MIT1002_00352 0.50 -1.9
378,658 - MIT1002_00352 0.50 -1.5
378,676 + MIT1002_00352 0.52 +2.7
378,678 - MIT1002_00352 0.52 +0.8
378,678 - MIT1002_00352 0.52 +0.3
378,678 - MIT1002_00352 0.52 -0.4
378,718 + MIT1002_00352 0.55 +0.3
378,723 + MIT1002_00352 0.55 -0.3
378,731 - MIT1002_00352 0.56 +0.5
378,731 - MIT1002_00352 0.56 -0.7
378,760 + MIT1002_00352 0.58 -2.5
378,768 - MIT1002_00352 0.59 -1.3
378,768 - MIT1002_00352 0.59 +1.8
378,783 - MIT1002_00352 0.60 -2.1
378,820 + MIT1002_00352 0.63 +1.8
378,847 + MIT1002_00352 0.65 +1.1
378,847 + MIT1002_00352 0.65 +1.0
378,847 + MIT1002_00352 0.65 +0.1
378,847 + MIT1002_00352 0.65 -0.3
378,855 - MIT1002_00352 0.66 -0.8
378,855 - MIT1002_00352 0.66 -0.8

Or see this region's nucleotide sequence