Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00228 and MIT1002_00229 are separated by 65 nucleotides MIT1002_00229 and MIT1002_00230 are separated by 72 nucleotides MIT1002_00230 and MIT1002_00231 overlap by 4 nucleotides MIT1002_00231 and MIT1002_00232 are separated by 104 nucleotides
MIT1002_00228: MIT1002_00228 - hypothetical protein, at 254,715 to 255,143
_00228
MIT1002_00229: MIT1002_00229 - x96 protein, at 255,209 to 255,766
_00229
MIT1002_00230: MIT1002_00230 - peptidase PmbA, at 255,839 to 257,170
_00230
MIT1002_00231: MIT1002_00231 - Methylphosphotriester-DNA--protein-cysteine S-methyltransferase, at 257,167 to 258,021
_00231
MIT1002_00232: MIT1002_00232 - Beta-galactosidase, at 258,126 to 261,245
_00232
Position (kb)
255
256
257
258 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 254.867 kb on + strand, within MIT1002_00228 at 254.872 kb on + strand, within MIT1002_00228 at 254.880 kb on - strand, within MIT1002_00228 at 254.897 kb on - strand, within MIT1002_00228 at 254.902 kb on - strand, within MIT1002_00228 at 254.912 kb on - strand, within MIT1002_00228 at 254.912 kb on - strand, within MIT1002_00228 at 254.936 kb on + strand, within MIT1002_00228 at 254.936 kb on + strand, within MIT1002_00228 at 254.936 kb on + strand, within MIT1002_00228 at 254.936 kb on + strand, within MIT1002_00228 at 254.936 kb on + strand, within MIT1002_00228 at 254.936 kb on + strand, within MIT1002_00228 at 254.944 kb on - strand, within MIT1002_00228 at 254.944 kb on - strand, within MIT1002_00228 at 254.944 kb on - strand, within MIT1002_00228 at 254.944 kb on - strand, within MIT1002_00228 at 254.944 kb on - strand, within MIT1002_00228 at 254.944 kb on - strand, within MIT1002_00228 at 254.944 kb on - strand, within MIT1002_00228 at 254.944 kb on - strand, within MIT1002_00228 at 254.944 kb on - strand, within MIT1002_00228 at 254.944 kb on - strand, within MIT1002_00228 at 254.968 kb on + strand, within MIT1002_00228 at 255.018 kb on + strand, within MIT1002_00228 at 255.118 kb on + strand at 255.118 kb on + strand at 255.118 kb on + strand at 255.126 kb on - strand at 255.191 kb on - strand at 255.207 kb on + strand at 255.330 kb on + strand, within MIT1002_00229 at 255.338 kb on - strand, within MIT1002_00229 at 255.366 kb on + strand, within MIT1002_00229 at 255.418 kb on - strand, within MIT1002_00229 at 255.450 kb on - strand, within MIT1002_00229 at 255.472 kb on + strand, within MIT1002_00229 at 255.480 kb on - strand, within MIT1002_00229 at 255.480 kb on - strand, within MIT1002_00229 at 255.488 kb on + strand, within MIT1002_00229 at 255.489 kb on + strand, within MIT1002_00229 at 255.636 kb on - strand, within MIT1002_00229 at 255.647 kb on - strand, within MIT1002_00229 at 255.691 kb on - strand, within MIT1002_00229 at 255.780 kb on + strand at 255.788 kb on - strand at 255.817 kb on + strand at 255.817 kb on + strand at 255.848 kb on + strand at 255.920 kb on - strand at 256.017 kb on + strand, within MIT1002_00230 at 256.025 kb on - strand, within MIT1002_00230 at 256.025 kb on - strand, within MIT1002_00230 at 256.059 kb on + strand, within MIT1002_00230 at 256.118 kb on + strand, within MIT1002_00230 at 256.208 kb on + strand, within MIT1002_00230 at 256.351 kb on + strand, within MIT1002_00230 at 256.394 kb on - strand, within MIT1002_00230 at 256.432 kb on + strand, within MIT1002_00230 at 256.432 kb on + strand, within MIT1002_00230 at 256.432 kb on + strand, within MIT1002_00230 at 256.435 kb on - strand, within MIT1002_00230 at 256.505 kb on + strand, within MIT1002_00230 at 256.505 kb on + strand, within MIT1002_00230 at 256.505 kb on + strand, within MIT1002_00230 at 256.521 kb on - strand, within MIT1002_00230 at 256.556 kb on + strand, within MIT1002_00230 at 256.584 kb on + strand, within MIT1002_00230 at 256.694 kb on - strand, within MIT1002_00230 at 256.720 kb on + strand, within MIT1002_00230 at 256.725 kb on + strand, within MIT1002_00230 at 256.809 kb on - strand, within MIT1002_00230 at 256.867 kb on - strand, within MIT1002_00230 at 256.869 kb on + strand, within MIT1002_00230 at 256.894 kb on - strand, within MIT1002_00230 at 256.894 kb on - strand, within MIT1002_00230 at 256.894 kb on - strand, within MIT1002_00230 at 256.894 kb on - strand, within MIT1002_00230 at 256.933 kb on - strand, within MIT1002_00230 at 256.948 kb on - strand, within MIT1002_00230 at 256.997 kb on - strand, within MIT1002_00230 at 257.002 kb on - strand, within MIT1002_00230 at 257.033 kb on + strand, within MIT1002_00230 at 257.046 kb on + strand at 257.115 kb on + strand at 257.115 kb on + strand at 257.115 kb on + strand at 257.120 kb on + strand at 257.120 kb on + strand at 257.128 kb on - strand at 257.128 kb on - strand at 257.130 kb on + strand at 257.162 kb on - strand at 257.177 kb on - strand at 257.259 kb on - strand, within MIT1002_00231 at 257.274 kb on + strand, within MIT1002_00231 at 257.348 kb on - strand, within MIT1002_00231 at 257.348 kb on - strand, within MIT1002_00231 at 257.369 kb on - strand, within MIT1002_00231 at 257.383 kb on + strand, within MIT1002_00231 at 257.383 kb on - strand, within MIT1002_00231 at 257.388 kb on + strand, within MIT1002_00231 at 257.391 kb on - strand, within MIT1002_00231 at 257.395 kb on + strand, within MIT1002_00231 at 257.396 kb on - strand, within MIT1002_00231 at 257.409 kb on + strand, within MIT1002_00231 at 257.529 kb on - strand, within MIT1002_00231 at 257.645 kb on + strand, within MIT1002_00231 at 257.663 kb on + strand, within MIT1002_00231 at 257.663 kb on + strand, within MIT1002_00231 at 257.682 kb on - strand, within MIT1002_00231 at 257.700 kb on + strand, within MIT1002_00231 at 257.700 kb on + strand, within MIT1002_00231 at 257.700 kb on + strand, within MIT1002_00231 at 257.708 kb on - strand, within MIT1002_00231 at 257.708 kb on - strand, within MIT1002_00231 at 257.748 kb on + strand, within MIT1002_00231 at 257.808 kb on - strand, within MIT1002_00231 at 257.882 kb on + strand, within MIT1002_00231 at 257.909 kb on - strand, within MIT1002_00231 at 257.959 kb on + strand at 257.987 kb on - strand at 257.988 kb on - strand at 258.100 kb on - strand at 258.128 kb on + strand at 258.128 kb on + strand at 258.128 kb on + strand at 258.128 kb on + strand at 258.135 kb on - strand at 258.136 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6 remove 254,867 + MIT1002_00228 0.35 -2.0 254,872 + MIT1002_00228 0.37 +0.1 254,880 - MIT1002_00228 0.38 +1.0 254,897 - MIT1002_00228 0.42 +0.1 254,902 - MIT1002_00228 0.44 +0.5 254,912 - MIT1002_00228 0.46 +0.5 254,912 - MIT1002_00228 0.46 -0.3 254,936 + MIT1002_00228 0.52 +1.9 254,936 + MIT1002_00228 0.52 -0.5 254,936 + MIT1002_00228 0.52 +0.5 254,936 + MIT1002_00228 0.52 -0.8 254,936 + MIT1002_00228 0.52 -0.3 254,936 + MIT1002_00228 0.52 +0.4 254,944 - MIT1002_00228 0.53 -1.2 254,944 - MIT1002_00228 0.53 +0.6 254,944 - MIT1002_00228 0.53 -0.2 254,944 - MIT1002_00228 0.53 +0.9 254,944 - MIT1002_00228 0.53 -0.3 254,944 - MIT1002_00228 0.53 -3.3 254,944 - MIT1002_00228 0.53 -2.2 254,944 - MIT1002_00228 0.53 +1.4 254,944 - MIT1002_00228 0.53 +1.2 254,944 - MIT1002_00228 0.53 -1.6 254,968 + MIT1002_00228 0.59 -1.4 255,018 + MIT1002_00228 0.71 -0.4 255,118 + -2.1 255,118 + +0.9 255,118 + -1.5 255,126 - +0.3 255,191 - -2.1 255,207 + -1.4 255,330 + MIT1002_00229 0.22 +0.7 255,338 - MIT1002_00229 0.23 -1.4 255,366 + MIT1002_00229 0.28 -1.2 255,418 - MIT1002_00229 0.37 +1.8 255,450 - MIT1002_00229 0.43 +0.1 255,472 + MIT1002_00229 0.47 -0.7 255,480 - MIT1002_00229 0.49 +0.8 255,480 - MIT1002_00229 0.49 -0.5 255,488 + MIT1002_00229 0.50 -1.3 255,489 + MIT1002_00229 0.50 +1.2 255,636 - MIT1002_00229 0.77 +0.4 255,647 - MIT1002_00229 0.78 -2.3 255,691 - MIT1002_00229 0.86 -0.5 255,780 + -0.5 255,788 - +0.1 255,817 + -0.4 255,817 + +1.6 255,848 + +3.8 255,920 - +1.1 256,017 + MIT1002_00230 0.13 -0.3 256,025 - MIT1002_00230 0.14 -2.8 256,025 - MIT1002_00230 0.14 +1.7 256,059 + MIT1002_00230 0.17 +1.7 256,118 + MIT1002_00230 0.21 +1.5 256,208 + MIT1002_00230 0.28 +0.4 256,351 + MIT1002_00230 0.38 -0.4 256,394 - MIT1002_00230 0.42 +5.3 256,432 + MIT1002_00230 0.45 +1.9 256,432 + MIT1002_00230 0.45 -0.4 256,432 + MIT1002_00230 0.45 +1.1 256,435 - MIT1002_00230 0.45 +0.5 256,505 + MIT1002_00230 0.50 -2.7 256,505 + MIT1002_00230 0.50 +1.0 256,505 + MIT1002_00230 0.50 +1.7 256,521 - MIT1002_00230 0.51 +1.4 256,556 + MIT1002_00230 0.54 +4.4 256,584 + MIT1002_00230 0.56 +0.8 256,694 - MIT1002_00230 0.64 +0.5 256,720 + MIT1002_00230 0.66 +1.7 256,725 + MIT1002_00230 0.67 +0.9 256,809 - MIT1002_00230 0.73 -0.5 256,867 - MIT1002_00230 0.77 +1.7 256,869 + MIT1002_00230 0.77 +1.1 256,894 - MIT1002_00230 0.79 -1.8 256,894 - MIT1002_00230 0.79 +2.3 256,894 - MIT1002_00230 0.79 +1.7 256,894 - MIT1002_00230 0.79 +0.9 256,933 - MIT1002_00230 0.82 +2.8 256,948 - MIT1002_00230 0.83 +0.6 256,997 - MIT1002_00230 0.87 +1.7 257,002 - MIT1002_00230 0.87 +1.4 257,033 + MIT1002_00230 0.90 +2.6 257,046 + +0.5 257,115 + +0.6 257,115 + +2.2 257,115 + +1.0 257,120 + +0.5 257,120 + +1.4 257,128 - +0.4 257,128 - -0.3 257,130 + -0.3 257,162 - +0.9 257,177 - -0.5 257,259 - MIT1002_00231 0.11 -1.6 257,274 + MIT1002_00231 0.13 +0.1 257,348 - MIT1002_00231 0.21 +0.6 257,348 - MIT1002_00231 0.21 -2.4 257,369 - MIT1002_00231 0.24 -1.0 257,383 + MIT1002_00231 0.25 -0.4 257,383 - MIT1002_00231 0.25 +0.4 257,388 + MIT1002_00231 0.26 +0.0 257,391 - MIT1002_00231 0.26 +0.4 257,395 + MIT1002_00231 0.27 -1.7 257,396 - MIT1002_00231 0.27 -0.5 257,409 + MIT1002_00231 0.28 +1.8 257,529 - MIT1002_00231 0.42 -0.9 257,645 + MIT1002_00231 0.56 -0.0 257,663 + MIT1002_00231 0.58 -0.2 257,663 + MIT1002_00231 0.58 +1.1 257,682 - MIT1002_00231 0.60 -1.2 257,700 + MIT1002_00231 0.62 -1.7 257,700 + MIT1002_00231 0.62 +0.2 257,700 + MIT1002_00231 0.62 -0.6 257,708 - MIT1002_00231 0.63 +1.1 257,708 - MIT1002_00231 0.63 -1.9 257,748 + MIT1002_00231 0.68 -1.6 257,808 - MIT1002_00231 0.75 +1.1 257,882 + MIT1002_00231 0.84 -0.2 257,909 - MIT1002_00231 0.87 +0.7 257,959 + -0.3 257,987 - -0.3 257,988 - -0.2 258,100 - -0.1 258,128 + +0.1 258,128 + -1.9 258,128 + -1.2 258,128 + -1.1 258,135 - -2.2 258,136 - -0.2
Or see this region's nucleotide sequence