Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00205

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00203 and MIT1002_00204 overlap by 4 nucleotidesMIT1002_00204 and MIT1002_00205 overlap by 26 nucleotidesMIT1002_00205 and MIT1002_00206 are separated by 9 nucleotidesMIT1002_00206 and MIT1002_00207 overlap by 17 nucleotides MIT1002_00203: MIT1002_00203 - hypothetical protein, at 226,564 to 227,478 _00203 MIT1002_00204: MIT1002_00204 - Fimbrial assembly protein (PilN), at 227,475 to 228,101 _00204 MIT1002_00205: MIT1002_00205 - General secretion pathway, M protein, at 228,076 to 228,723 _00205 MIT1002_00206: MIT1002_00206 - hypothetical protein, at 228,733 to 229,053 _00206 MIT1002_00207: MIT1002_00207 - Pectic enzymes secretion protein OutD, at 229,037 to 230,785 _00207 Position (kb) 228 229Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 227.083 kb on + strand, within MIT1002_00203at 227.116 kb on + strand, within MIT1002_00203at 227.126 kb on - strand, within MIT1002_00203at 227.232 kb on - strand, within MIT1002_00203at 227.269 kb on - strand, within MIT1002_00203at 227.415 kb on + strandat 227.493 kb on - strandat 227.506 kb on + strandat 227.600 kb on + strand, within MIT1002_00204at 227.610 kb on - strand, within MIT1002_00204at 227.610 kb on - strand, within MIT1002_00204at 227.610 kb on - strand, within MIT1002_00204at 227.610 kb on - strand, within MIT1002_00204at 227.622 kb on - strand, within MIT1002_00204at 227.622 kb on - strand, within MIT1002_00204at 227.781 kb on + strand, within MIT1002_00204at 227.799 kb on - strand, within MIT1002_00204at 227.865 kb on - strand, within MIT1002_00204at 227.907 kb on - strand, within MIT1002_00204at 227.913 kb on + strand, within MIT1002_00204at 227.913 kb on + strand, within MIT1002_00204at 227.941 kb on - strand, within MIT1002_00204at 227.941 kb on - strand, within MIT1002_00204at 228.003 kb on - strand, within MIT1002_00204at 228.115 kb on + strandat 228.115 kb on + strandat 228.123 kb on - strandat 228.123 kb on - strandat 228.160 kb on - strand, within MIT1002_00205at 228.160 kb on - strand, within MIT1002_00205at 228.324 kb on + strand, within MIT1002_00205at 228.331 kb on - strand, within MIT1002_00205at 228.339 kb on + strand, within MIT1002_00205at 228.393 kb on + strand, within MIT1002_00205at 228.393 kb on + strand, within MIT1002_00205at 228.423 kb on + strand, within MIT1002_00205at 228.423 kb on + strand, within MIT1002_00205at 228.431 kb on - strand, within MIT1002_00205at 228.521 kb on - strand, within MIT1002_00205at 228.569 kb on + strand, within MIT1002_00205at 228.587 kb on + strand, within MIT1002_00205at 228.597 kb on + strand, within MIT1002_00205at 228.605 kb on - strand, within MIT1002_00205at 228.605 kb on - strand, within MIT1002_00205at 228.631 kb on + strand, within MIT1002_00205at 228.673 kb on + strandat 228.673 kb on + strandat 228.673 kb on + strandat 228.673 kb on + strandat 228.681 kb on - strandat 228.688 kb on - strandat 228.720 kb on + strandat 228.741 kb on - strandat 228.845 kb on - strand, within MIT1002_00206at 228.901 kb on + strand, within MIT1002_00206at 228.904 kb on - strand, within MIT1002_00206at 228.955 kb on + strand, within MIT1002_00206at 229.072 kb on + strandat 229.136 kb on - strandat 229.176 kb on - strandat 229.176 kb on - strandat 229.197 kb on + strandat 229.198 kb on - strandat 229.227 kb on - strand, within MIT1002_00207at 229.244 kb on + strand, within MIT1002_00207at 229.251 kb on - strand, within MIT1002_00207at 229.251 kb on - strand, within MIT1002_00207at 229.251 kb on - strand, within MIT1002_00207at 229.293 kb on + strand, within MIT1002_00207at 229.293 kb on + strand, within MIT1002_00207at 229.301 kb on - strand, within MIT1002_00207at 229.336 kb on + strand, within MIT1002_00207at 229.337 kb on + strand, within MIT1002_00207at 229.337 kb on + strand, within MIT1002_00207at 229.344 kb on - strand, within MIT1002_00207at 229.344 kb on - strand, within MIT1002_00207at 229.352 kb on - strand, within MIT1002_00207at 229.380 kb on + strand, within MIT1002_00207at 229.420 kb on - strand, within MIT1002_00207at 229.474 kb on + strand, within MIT1002_00207at 229.474 kb on + strand, within MIT1002_00207at 229.482 kb on - strand, within MIT1002_00207at 229.515 kb on + strand, within MIT1002_00207at 229.551 kb on - strand, within MIT1002_00207at 229.610 kb on + strand, within MIT1002_00207at 229.678 kb on - strand, within MIT1002_00207

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6
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227,083 + MIT1002_00203 0.57 -2.1
227,116 + MIT1002_00203 0.60 +1.3
227,126 - MIT1002_00203 0.61 +0.5
227,232 - MIT1002_00203 0.73 +1.1
227,269 - MIT1002_00203 0.77 +2.4
227,415 + +0.9
227,493 - +1.2
227,506 + +1.1
227,600 + MIT1002_00204 0.20 +1.0
227,610 - MIT1002_00204 0.22 +1.0
227,610 - MIT1002_00204 0.22 +0.7
227,610 - MIT1002_00204 0.22 +1.6
227,610 - MIT1002_00204 0.22 +1.1
227,622 - MIT1002_00204 0.23 -0.2
227,622 - MIT1002_00204 0.23 +1.0
227,781 + MIT1002_00204 0.49 +1.3
227,799 - MIT1002_00204 0.52 +0.5
227,865 - MIT1002_00204 0.62 +1.1
227,907 - MIT1002_00204 0.69 +0.9
227,913 + MIT1002_00204 0.70 +2.5
227,913 + MIT1002_00204 0.70 +1.2
227,941 - MIT1002_00204 0.74 +1.4
227,941 - MIT1002_00204 0.74 +1.4
228,003 - MIT1002_00204 0.84 +0.7
228,115 + +0.9
228,115 + +1.5
228,123 - +0.1
228,123 - +0.1
228,160 - MIT1002_00205 0.13 -0.5
228,160 - MIT1002_00205 0.13 +0.9
228,324 + MIT1002_00205 0.38 -0.2
228,331 - MIT1002_00205 0.39 -0.4
228,339 + MIT1002_00205 0.41 +0.1
228,393 + MIT1002_00205 0.49 +0.5
228,393 + MIT1002_00205 0.49 +0.8
228,423 + MIT1002_00205 0.54 +0.3
228,423 + MIT1002_00205 0.54 -0.3
228,431 - MIT1002_00205 0.55 -0.2
228,521 - MIT1002_00205 0.69 +1.3
228,569 + MIT1002_00205 0.76 +1.2
228,587 + MIT1002_00205 0.79 +1.0
228,597 + MIT1002_00205 0.80 +0.8
228,605 - MIT1002_00205 0.82 +3.7
228,605 - MIT1002_00205 0.82 +2.5
228,631 + MIT1002_00205 0.86 +2.2
228,673 + +2.6
228,673 + +1.5
228,673 + +1.3
228,673 + +0.5
228,681 - +1.2
228,688 - +2.1
228,720 + -1.0
228,741 - -0.9
228,845 - MIT1002_00206 0.35 +0.3
228,901 + MIT1002_00206 0.52 +2.1
228,904 - MIT1002_00206 0.53 +0.9
228,955 + MIT1002_00206 0.69 +2.3
229,072 + -0.4
229,136 - -2.8
229,176 - -0.1
229,176 - +1.1
229,197 + +1.1
229,198 - +0.2
229,227 - MIT1002_00207 0.11 +1.7
229,244 + MIT1002_00207 0.12 -0.0
229,251 - MIT1002_00207 0.12 +2.8
229,251 - MIT1002_00207 0.12 -0.7
229,251 - MIT1002_00207 0.12 +0.9
229,293 + MIT1002_00207 0.15 -2.3
229,293 + MIT1002_00207 0.15 +0.7
229,301 - MIT1002_00207 0.15 -0.5
229,336 + MIT1002_00207 0.17 +0.4
229,337 + MIT1002_00207 0.17 +1.9
229,337 + MIT1002_00207 0.17 +0.4
229,344 - MIT1002_00207 0.18 -0.9
229,344 - MIT1002_00207 0.18 +1.5
229,352 - MIT1002_00207 0.18 +0.1
229,380 + MIT1002_00207 0.20 +0.4
229,420 - MIT1002_00207 0.22 +0.4
229,474 + MIT1002_00207 0.25 +0.2
229,474 + MIT1002_00207 0.25 +1.7
229,482 - MIT1002_00207 0.25 +2.1
229,515 + MIT1002_00207 0.27 +0.1
229,551 - MIT1002_00207 0.29 -1.0
229,610 + MIT1002_00207 0.33 -2.5
229,678 - MIT1002_00207 0.37 -0.6

Or see this region's nucleotide sequence