Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00189

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00188 and MIT1002_00189 overlap by 8 nucleotidesMIT1002_00189 and MIT1002_00190 are separated by 357 nucleotides MIT1002_00188: MIT1002_00188 - Galactose-1-phosphate uridylyltransferase, at 204,649 to 205,704 _00188 MIT1002_00189: MIT1002_00189 - Galactokinase, at 205,697 to 206,836 _00189 MIT1002_00190: MIT1002_00190 - Na(+)/glucose symporter, at 207,194 to 208,756 _00190 Position (kb) 205 206 207Strain fitness (log2 ratio) -10 -9 -8 -7 -6 -5 -4 -3 -2 -1 0 1 2 3 4 5 6at 204.698 kb on - strandat 204.698 kb on - strandat 204.715 kb on + strandat 204.715 kb on + strandat 204.723 kb on - strandat 204.843 kb on + strand, within MIT1002_00188at 204.843 kb on + strand, within MIT1002_00188at 204.851 kb on - strand, within MIT1002_00188at 204.851 kb on - strand, within MIT1002_00188at 204.893 kb on + strand, within MIT1002_00188at 204.901 kb on - strand, within MIT1002_00188at 204.918 kb on - strand, within MIT1002_00188at 204.965 kb on - strand, within MIT1002_00188at 205.061 kb on + strand, within MIT1002_00188at 205.096 kb on - strand, within MIT1002_00188at 205.127 kb on + strand, within MIT1002_00188at 205.127 kb on + strand, within MIT1002_00188at 205.135 kb on - strand, within MIT1002_00188at 205.135 kb on - strand, within MIT1002_00188at 205.203 kb on + strand, within MIT1002_00188at 205.240 kb on + strand, within MIT1002_00188at 205.240 kb on + strand, within MIT1002_00188at 205.240 kb on - strand, within MIT1002_00188at 205.245 kb on + strand, within MIT1002_00188at 205.305 kb on + strand, within MIT1002_00188at 205.323 kb on - strand, within MIT1002_00188at 205.356 kb on - strand, within MIT1002_00188at 205.500 kb on + strand, within MIT1002_00188at 205.555 kb on + strand, within MIT1002_00188at 205.565 kb on + strand, within MIT1002_00188at 205.565 kb on + strand, within MIT1002_00188at 205.573 kb on - strand, within MIT1002_00188at 205.580 kb on + strand, within MIT1002_00188at 205.581 kb on + strand, within MIT1002_00188at 205.629 kb on - strandat 205.629 kb on - strandat 205.845 kb on + strand, within MIT1002_00189at 205.874 kb on + strand, within MIT1002_00189at 205.874 kb on + strand, within MIT1002_00189at 205.882 kb on - strand, within MIT1002_00189at 205.882 kb on - strand, within MIT1002_00189at 205.882 kb on - strand, within MIT1002_00189at 205.882 kb on - strand, within MIT1002_00189at 205.955 kb on + strand, within MIT1002_00189at 205.955 kb on + strand, within MIT1002_00189at 205.955 kb on + strand, within MIT1002_00189at 205.955 kb on + strand, within MIT1002_00189at 205.963 kb on - strand, within MIT1002_00189at 205.963 kb on - strand, within MIT1002_00189at 205.963 kb on - strand, within MIT1002_00189at 206.038 kb on - strand, within MIT1002_00189at 206.061 kb on + strand, within MIT1002_00189at 206.061 kb on + strand, within MIT1002_00189at 206.066 kb on + strand, within MIT1002_00189at 206.066 kb on + strand, within MIT1002_00189at 206.066 kb on + strand, within MIT1002_00189at 206.069 kb on - strand, within MIT1002_00189at 206.069 kb on - strand, within MIT1002_00189at 206.074 kb on - strand, within MIT1002_00189at 206.074 kb on - strand, within MIT1002_00189at 206.093 kb on - strand, within MIT1002_00189at 206.157 kb on - strand, within MIT1002_00189at 206.252 kb on - strand, within MIT1002_00189at 206.346 kb on - strand, within MIT1002_00189at 206.362 kb on - strand, within MIT1002_00189at 206.384 kb on - strand, within MIT1002_00189at 206.395 kb on + strand, within MIT1002_00189at 206.403 kb on - strand, within MIT1002_00189at 206.446 kb on + strand, within MIT1002_00189at 206.506 kb on + strand, within MIT1002_00189at 206.506 kb on + strand, within MIT1002_00189at 206.540 kb on - strand, within MIT1002_00189at 206.557 kb on + strand, within MIT1002_00189at 206.579 kb on + strand, within MIT1002_00189at 206.715 kb on + strand, within MIT1002_00189at 206.723 kb on - strandat 206.724 kb on - strandat 206.760 kb on - strandat 206.783 kb on + strandat 206.790 kb on + strandat 206.793 kb on - strandat 206.806 kb on + strandat 206.806 kb on + strandat 206.811 kb on + strandat 206.811 kb on + strandat 206.811 kb on + strandat 206.819 kb on - strandat 206.819 kb on - strandat 206.819 kb on - strandat 206.819 kb on - strandat 206.819 kb on - strandat 206.819 kb on - strandat 206.819 kb on - strandat 206.819 kb on - strandat 206.877 kb on - strandat 206.888 kb on + strandat 206.922 kb on - strandat 206.922 kb on - strandat 206.935 kb on - strandat 207.033 kb on - strandat 207.138 kb on + strandat 207.148 kb on - strandat 207.278 kb on + strandat 207.295 kb on - strandat 207.326 kb on + strandat 207.365 kb on + strand, within MIT1002_00190at 207.407 kb on + strand, within MIT1002_00190at 207.415 kb on - strand, within MIT1002_00190at 207.427 kb on - strand, within MIT1002_00190at 207.453 kb on + strand, within MIT1002_00190at 207.461 kb on - strand, within MIT1002_00190at 207.579 kb on + strand, within MIT1002_00190at 207.604 kb on + strand, within MIT1002_00190at 207.612 kb on - strand, within MIT1002_00190at 207.617 kb on - strand, within MIT1002_00190at 207.654 kb on - strand, within MIT1002_00190at 207.689 kb on - strand, within MIT1002_00190at 207.710 kb on + strand, within MIT1002_00190at 207.710 kb on - strand, within MIT1002_00190at 207.737 kb on - strand, within MIT1002_00190at 207.737 kb on - strand, within MIT1002_00190at 207.763 kb on + strand, within MIT1002_00190at 207.781 kb on + strand, within MIT1002_00190at 207.795 kb on - strand, within MIT1002_00190at 207.827 kb on - strand, within MIT1002_00190

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6
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204,698 - -3.0
204,698 - -1.9
204,715 + -3.0
204,715 + -0.4
204,723 - -3.7
204,843 + MIT1002_00188 0.18 -1.9
204,843 + MIT1002_00188 0.18 -3.5
204,851 - MIT1002_00188 0.19 -2.9
204,851 - MIT1002_00188 0.19 -4.3
204,893 + MIT1002_00188 0.23 -2.2
204,901 - MIT1002_00188 0.24 -0.5
204,918 - MIT1002_00188 0.25 -0.8
204,965 - MIT1002_00188 0.30 -2.3
205,061 + MIT1002_00188 0.39 -3.2
205,096 - MIT1002_00188 0.42 -4.5
205,127 + MIT1002_00188 0.45 -2.2
205,127 + MIT1002_00188 0.45 -2.3
205,135 - MIT1002_00188 0.46 -4.0
205,135 - MIT1002_00188 0.46 -0.7
205,203 + MIT1002_00188 0.52 +0.3
205,240 + MIT1002_00188 0.56 -1.0
205,240 + MIT1002_00188 0.56 -4.1
205,240 - MIT1002_00188 0.56 -3.5
205,245 + MIT1002_00188 0.56 -1.8
205,305 + MIT1002_00188 0.62 -5.2
205,323 - MIT1002_00188 0.64 -4.7
205,356 - MIT1002_00188 0.67 -1.5
205,500 + MIT1002_00188 0.81 -1.9
205,555 + MIT1002_00188 0.86 +1.1
205,565 + MIT1002_00188 0.87 -0.6
205,565 + MIT1002_00188 0.87 -1.5
205,573 - MIT1002_00188 0.88 -3.0
205,580 + MIT1002_00188 0.88 +0.3
205,581 + MIT1002_00188 0.88 -2.5
205,629 - -3.0
205,629 - -3.3
205,845 + MIT1002_00189 0.13 -3.5
205,874 + MIT1002_00189 0.16 -3.1
205,874 + MIT1002_00189 0.16 -4.9
205,882 - MIT1002_00189 0.16 -2.0
205,882 - MIT1002_00189 0.16 -6.4
205,882 - MIT1002_00189 0.16 -4.5
205,882 - MIT1002_00189 0.16 -0.5
205,955 + MIT1002_00189 0.23 -1.8
205,955 + MIT1002_00189 0.23 -1.6
205,955 + MIT1002_00189 0.23 -1.3
205,955 + MIT1002_00189 0.23 -0.8
205,963 - MIT1002_00189 0.23 -2.9
205,963 - MIT1002_00189 0.23 -4.6
205,963 - MIT1002_00189 0.23 -4.3
206,038 - MIT1002_00189 0.30 -5.1
206,061 + MIT1002_00189 0.32 -2.4
206,061 + MIT1002_00189 0.32 -3.2
206,066 + MIT1002_00189 0.32 -2.5
206,066 + MIT1002_00189 0.32 -0.5
206,066 + MIT1002_00189 0.32 -2.9
206,069 - MIT1002_00189 0.33 -3.4
206,069 - MIT1002_00189 0.33 -4.3
206,074 - MIT1002_00189 0.33 -4.0
206,074 - MIT1002_00189 0.33 -1.3
206,093 - MIT1002_00189 0.35 -2.6
206,157 - MIT1002_00189 0.40 -4.8
206,252 - MIT1002_00189 0.49 -0.6
206,346 - MIT1002_00189 0.57 -1.7
206,362 - MIT1002_00189 0.58 -1.5
206,384 - MIT1002_00189 0.60 -9.8
206,395 + MIT1002_00189 0.61 +0.3
206,403 - MIT1002_00189 0.62 -0.1
206,446 + MIT1002_00189 0.66 -0.6
206,506 + MIT1002_00189 0.71 -1.6
206,506 + MIT1002_00189 0.71 -3.1
206,540 - MIT1002_00189 0.74 -3.4
206,557 + MIT1002_00189 0.75 -1.7
206,579 + MIT1002_00189 0.77 -2.1
206,715 + MIT1002_00189 0.89 +0.5
206,723 - -3.3
206,724 - -2.5
206,760 - -3.3
206,783 + -4.4
206,790 + -4.3
206,793 - +0.4
206,806 + -0.0
206,806 + +1.9
206,811 + +5.3
206,811 + +4.8
206,811 + +5.0
206,819 - +6.1
206,819 - +5.6
206,819 - +4.5
206,819 - +4.9
206,819 - +4.8
206,819 - +5.4
206,819 - +5.7
206,819 - +4.8
206,877 - +1.3
206,888 + +1.0
206,922 - -0.1
206,922 - +0.3
206,935 - -0.4
207,033 - -2.4
207,138 + -0.5
207,148 - +0.9
207,278 + -0.6
207,295 - +0.5
207,326 + +0.4
207,365 + MIT1002_00190 0.11 +2.2
207,407 + MIT1002_00190 0.14 -0.3
207,415 - MIT1002_00190 0.14 +0.5
207,427 - MIT1002_00190 0.15 +1.3
207,453 + MIT1002_00190 0.17 +1.8
207,461 - MIT1002_00190 0.17 -0.7
207,579 + MIT1002_00190 0.25 +1.4
207,604 + MIT1002_00190 0.26 +0.7
207,612 - MIT1002_00190 0.27 +1.0
207,617 - MIT1002_00190 0.27 +0.7
207,654 - MIT1002_00190 0.29 +0.4
207,689 - MIT1002_00190 0.32 +0.7
207,710 + MIT1002_00190 0.33 +0.3
207,710 - MIT1002_00190 0.33 -0.8
207,737 - MIT1002_00190 0.35 +0.2
207,737 - MIT1002_00190 0.35 -2.5
207,763 + MIT1002_00190 0.36 +1.9
207,781 + MIT1002_00190 0.38 +0.9
207,795 - MIT1002_00190 0.38 +0.7
207,827 - MIT1002_00190 0.40 -0.6

Or see this region's nucleotide sequence