Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00187 and MIT1002_00188 are separated by 172 nucleotides MIT1002_00188 and MIT1002_00189 overlap by 8 nucleotides
MIT1002_00187: MIT1002_00187 - Aldose 1-epimerase precursor, at 203,457 to 204,476
_00187
MIT1002_00188: MIT1002_00188 - Galactose-1-phosphate uridylyltransferase, at 204,649 to 205,704
_00188
MIT1002_00189: MIT1002_00189 - Galactokinase, at 205,697 to 206,836
_00189
Position (kb)
204
205
206 Strain fitness (log2 ratio)
-10
-9
-8
-7
-6
-5
-4
-3
-2
-1
0
1
2
3
4
5
6 at 203.689 kb on - strand, within MIT1002_00187 at 203.720 kb on + strand, within MIT1002_00187 at 203.720 kb on + strand, within MIT1002_00187 at 203.725 kb on + strand, within MIT1002_00187 at 203.728 kb on - strand, within MIT1002_00187 at 203.730 kb on + strand, within MIT1002_00187 at 203.730 kb on + strand, within MIT1002_00187 at 203.730 kb on + strand, within MIT1002_00187 at 203.738 kb on - strand, within MIT1002_00187 at 203.738 kb on - strand, within MIT1002_00187 at 203.738 kb on - strand, within MIT1002_00187 at 203.738 kb on - strand, within MIT1002_00187 at 203.771 kb on - strand, within MIT1002_00187 at 203.798 kb on + strand, within MIT1002_00187 at 203.806 kb on - strand, within MIT1002_00187 at 203.827 kb on - strand, within MIT1002_00187 at 203.858 kb on - strand, within MIT1002_00187 at 203.868 kb on - strand, within MIT1002_00187 at 203.871 kb on + strand, within MIT1002_00187 at 203.980 kb on + strand, within MIT1002_00187 at 204.034 kb on - strand, within MIT1002_00187 at 204.034 kb on - strand, within MIT1002_00187 at 204.165 kb on - strand, within MIT1002_00187 at 204.195 kb on + strand, within MIT1002_00187 at 204.202 kb on - strand, within MIT1002_00187 at 204.214 kb on + strand, within MIT1002_00187 at 204.214 kb on + strand, within MIT1002_00187 at 204.214 kb on + strand, within MIT1002_00187 at 204.214 kb on + strand, within MIT1002_00187 at 204.220 kb on - strand, within MIT1002_00187 at 204.222 kb on - strand, within MIT1002_00187 at 204.222 kb on - strand, within MIT1002_00187 at 204.222 kb on - strand, within MIT1002_00187 at 204.222 kb on - strand, within MIT1002_00187 at 204.240 kb on - strand, within MIT1002_00187 at 204.240 kb on - strand, within MIT1002_00187 at 204.244 kb on + strand, within MIT1002_00187 at 204.272 kb on - strand, within MIT1002_00187 at 204.310 kb on - strand, within MIT1002_00187 at 204.325 kb on - strand, within MIT1002_00187 at 204.350 kb on + strand, within MIT1002_00187 at 204.357 kb on + strand, within MIT1002_00187 at 204.357 kb on + strand, within MIT1002_00187 at 204.358 kb on - strand, within MIT1002_00187 at 204.627 kb on + strand at 204.639 kb on - strand at 204.659 kb on + strand at 204.666 kb on - strand at 204.698 kb on - strand at 204.698 kb on - strand at 204.715 kb on + strand at 204.715 kb on + strand at 204.723 kb on - strand at 204.843 kb on + strand, within MIT1002_00188 at 204.843 kb on + strand, within MIT1002_00188 at 204.851 kb on - strand, within MIT1002_00188 at 204.851 kb on - strand, within MIT1002_00188 at 204.893 kb on + strand, within MIT1002_00188 at 204.901 kb on - strand, within MIT1002_00188 at 204.918 kb on - strand, within MIT1002_00188 at 204.965 kb on - strand, within MIT1002_00188 at 205.061 kb on + strand, within MIT1002_00188 at 205.096 kb on - strand, within MIT1002_00188 at 205.127 kb on + strand, within MIT1002_00188 at 205.127 kb on + strand, within MIT1002_00188 at 205.135 kb on - strand, within MIT1002_00188 at 205.135 kb on - strand, within MIT1002_00188 at 205.203 kb on + strand, within MIT1002_00188 at 205.240 kb on + strand, within MIT1002_00188 at 205.240 kb on + strand, within MIT1002_00188 at 205.240 kb on - strand, within MIT1002_00188 at 205.245 kb on + strand, within MIT1002_00188 at 205.305 kb on + strand, within MIT1002_00188 at 205.323 kb on - strand, within MIT1002_00188 at 205.356 kb on - strand, within MIT1002_00188 at 205.500 kb on + strand, within MIT1002_00188 at 205.555 kb on + strand, within MIT1002_00188 at 205.565 kb on + strand, within MIT1002_00188 at 205.565 kb on + strand, within MIT1002_00188 at 205.573 kb on - strand, within MIT1002_00188 at 205.580 kb on + strand, within MIT1002_00188 at 205.581 kb on + strand, within MIT1002_00188 at 205.629 kb on - strand at 205.629 kb on - strand at 205.845 kb on + strand, within MIT1002_00189 at 205.874 kb on + strand, within MIT1002_00189 at 205.874 kb on + strand, within MIT1002_00189 at 205.882 kb on - strand, within MIT1002_00189 at 205.882 kb on - strand, within MIT1002_00189 at 205.882 kb on - strand, within MIT1002_00189 at 205.882 kb on - strand, within MIT1002_00189 at 205.955 kb on + strand, within MIT1002_00189 at 205.955 kb on + strand, within MIT1002_00189 at 205.955 kb on + strand, within MIT1002_00189 at 205.955 kb on + strand, within MIT1002_00189 at 205.963 kb on - strand, within MIT1002_00189 at 205.963 kb on - strand, within MIT1002_00189 at 205.963 kb on - strand, within MIT1002_00189 at 206.038 kb on - strand, within MIT1002_00189 at 206.061 kb on + strand, within MIT1002_00189 at 206.061 kb on + strand, within MIT1002_00189 at 206.066 kb on + strand, within MIT1002_00189 at 206.066 kb on + strand, within MIT1002_00189 at 206.066 kb on + strand, within MIT1002_00189 at 206.069 kb on - strand, within MIT1002_00189 at 206.069 kb on - strand, within MIT1002_00189 at 206.074 kb on - strand, within MIT1002_00189 at 206.074 kb on - strand, within MIT1002_00189 at 206.093 kb on - strand, within MIT1002_00189 at 206.157 kb on - strand, within MIT1002_00189 at 206.252 kb on - strand, within MIT1002_00189 at 206.346 kb on - strand, within MIT1002_00189 at 206.362 kb on - strand, within MIT1002_00189 at 206.384 kb on - strand, within MIT1002_00189 at 206.395 kb on + strand, within MIT1002_00189 at 206.403 kb on - strand, within MIT1002_00189 at 206.446 kb on + strand, within MIT1002_00189 at 206.506 kb on + strand, within MIT1002_00189 at 206.506 kb on + strand, within MIT1002_00189 at 206.540 kb on - strand, within MIT1002_00189 at 206.557 kb on + strand, within MIT1002_00189 at 206.579 kb on + strand, within MIT1002_00189
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6 remove 203,689 - MIT1002_00187 0.23 +5.5 203,720 + MIT1002_00187 0.26 +5.7 203,720 + MIT1002_00187 0.26 +5.3 203,725 + MIT1002_00187 0.26 +5.6 203,728 - MIT1002_00187 0.27 +5.1 203,730 + MIT1002_00187 0.27 +5.7 203,730 + MIT1002_00187 0.27 +5.8 203,730 + MIT1002_00187 0.27 +5.4 203,738 - MIT1002_00187 0.28 +6.1 203,738 - MIT1002_00187 0.28 +5.8 203,738 - MIT1002_00187 0.28 +4.3 203,738 - MIT1002_00187 0.28 +5.2 203,771 - MIT1002_00187 0.31 +5.2 203,798 + MIT1002_00187 0.33 +5.4 203,806 - MIT1002_00187 0.34 +5.3 203,827 - MIT1002_00187 0.36 +4.9 203,858 - MIT1002_00187 0.39 +4.7 203,868 - MIT1002_00187 0.40 +6.0 203,871 + MIT1002_00187 0.41 +4.8 203,980 + MIT1002_00187 0.51 +5.5 204,034 - MIT1002_00187 0.57 +5.8 204,034 - MIT1002_00187 0.57 +5.6 204,165 - MIT1002_00187 0.69 +5.4 204,195 + MIT1002_00187 0.72 +4.5 204,202 - MIT1002_00187 0.73 +6.4 204,214 + MIT1002_00187 0.74 +5.4 204,214 + MIT1002_00187 0.74 +5.7 204,214 + MIT1002_00187 0.74 +5.2 204,214 + MIT1002_00187 0.74 +4.6 204,220 - MIT1002_00187 0.75 +5.7 204,222 - MIT1002_00187 0.75 +4.8 204,222 - MIT1002_00187 0.75 +5.1 204,222 - MIT1002_00187 0.75 +5.3 204,222 - MIT1002_00187 0.75 +6.0 204,240 - MIT1002_00187 0.77 +4.7 204,240 - MIT1002_00187 0.77 +5.2 204,244 + MIT1002_00187 0.77 +5.8 204,272 - MIT1002_00187 0.80 +6.1 204,310 - MIT1002_00187 0.84 +4.5 204,325 - MIT1002_00187 0.85 +4.9 204,350 + MIT1002_00187 0.88 +5.3 204,357 + MIT1002_00187 0.88 +5.1 204,357 + MIT1002_00187 0.88 +6.3 204,358 - MIT1002_00187 0.88 +5.1 204,627 + +2.5 204,639 - -2.1 204,659 + -3.9 204,666 - -2.0 204,698 - -3.0 204,698 - -1.9 204,715 + -3.0 204,715 + -0.4 204,723 - -3.7 204,843 + MIT1002_00188 0.18 -1.9 204,843 + MIT1002_00188 0.18 -3.5 204,851 - MIT1002_00188 0.19 -2.9 204,851 - MIT1002_00188 0.19 -4.3 204,893 + MIT1002_00188 0.23 -2.2 204,901 - MIT1002_00188 0.24 -0.5 204,918 - MIT1002_00188 0.25 -0.8 204,965 - MIT1002_00188 0.30 -2.3 205,061 + MIT1002_00188 0.39 -3.2 205,096 - MIT1002_00188 0.42 -4.5 205,127 + MIT1002_00188 0.45 -2.2 205,127 + MIT1002_00188 0.45 -2.3 205,135 - MIT1002_00188 0.46 -4.0 205,135 - MIT1002_00188 0.46 -0.7 205,203 + MIT1002_00188 0.52 +0.3 205,240 + MIT1002_00188 0.56 -1.0 205,240 + MIT1002_00188 0.56 -4.1 205,240 - MIT1002_00188 0.56 -3.5 205,245 + MIT1002_00188 0.56 -1.8 205,305 + MIT1002_00188 0.62 -5.2 205,323 - MIT1002_00188 0.64 -4.7 205,356 - MIT1002_00188 0.67 -1.5 205,500 + MIT1002_00188 0.81 -1.9 205,555 + MIT1002_00188 0.86 +1.1 205,565 + MIT1002_00188 0.87 -0.6 205,565 + MIT1002_00188 0.87 -1.5 205,573 - MIT1002_00188 0.88 -3.0 205,580 + MIT1002_00188 0.88 +0.3 205,581 + MIT1002_00188 0.88 -2.5 205,629 - -3.0 205,629 - -3.3 205,845 + MIT1002_00189 0.13 -3.5 205,874 + MIT1002_00189 0.16 -3.1 205,874 + MIT1002_00189 0.16 -4.9 205,882 - MIT1002_00189 0.16 -2.0 205,882 - MIT1002_00189 0.16 -6.4 205,882 - MIT1002_00189 0.16 -4.5 205,882 - MIT1002_00189 0.16 -0.5 205,955 + MIT1002_00189 0.23 -1.8 205,955 + MIT1002_00189 0.23 -1.6 205,955 + MIT1002_00189 0.23 -1.3 205,955 + MIT1002_00189 0.23 -0.8 205,963 - MIT1002_00189 0.23 -2.9 205,963 - MIT1002_00189 0.23 -4.6 205,963 - MIT1002_00189 0.23 -4.3 206,038 - MIT1002_00189 0.30 -5.1 206,061 + MIT1002_00189 0.32 -2.4 206,061 + MIT1002_00189 0.32 -3.2 206,066 + MIT1002_00189 0.32 -2.5 206,066 + MIT1002_00189 0.32 -0.5 206,066 + MIT1002_00189 0.32 -2.9 206,069 - MIT1002_00189 0.33 -3.4 206,069 - MIT1002_00189 0.33 -4.3 206,074 - MIT1002_00189 0.33 -4.0 206,074 - MIT1002_00189 0.33 -1.3 206,093 - MIT1002_00189 0.35 -2.6 206,157 - MIT1002_00189 0.40 -4.8 206,252 - MIT1002_00189 0.49 -0.6 206,346 - MIT1002_00189 0.57 -1.7 206,362 - MIT1002_00189 0.58 -1.5 206,384 - MIT1002_00189 0.60 -9.8 206,395 + MIT1002_00189 0.61 +0.3 206,403 - MIT1002_00189 0.62 -0.1 206,446 + MIT1002_00189 0.66 -0.6 206,506 + MIT1002_00189 0.71 -1.6 206,506 + MIT1002_00189 0.71 -3.1 206,540 - MIT1002_00189 0.74 -3.4 206,557 + MIT1002_00189 0.75 -1.7 206,579 + MIT1002_00189 0.77 -2.1
Or see this region's nucleotide sequence