Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00165 and MIT1002_00166 are separated by 31 nucleotides MIT1002_00166 and MIT1002_00167 are separated by 2 nucleotides MIT1002_00167 and MIT1002_00168 are separated by 71 nucleotides
MIT1002_00165: MIT1002_00165 - Multiple sugar-binding protein precursor, at 180,537 to 181,778
_00165
MIT1002_00166: MIT1002_00166 - S1/P1 Nuclease, at 181,810 to 182,619
_00166
MIT1002_00167: MIT1002_00167 - putative aromatic acid decarboxylase, at 182,622 to 183,254
_00167
MIT1002_00168: MIT1002_00168 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase, at 183,326 to 184,684
_00168
Position (kb) 181
182
183 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 180.835 kb on + strand, within MIT1002_00165 at 180.835 kb on + strand, within MIT1002_00165 at 180.835 kb on + strand, within MIT1002_00165 at 180.835 kb on + strand, within MIT1002_00165 at 180.843 kb on - strand, within MIT1002_00165 at 180.845 kb on - strand, within MIT1002_00165 at 180.845 kb on - strand, within MIT1002_00165 at 180.907 kb on + strand, within MIT1002_00165 at 180.915 kb on - strand, within MIT1002_00165 at 180.927 kb on - strand, within MIT1002_00165 at 181.006 kb on - strand, within MIT1002_00165 at 181.016 kb on + strand, within MIT1002_00165 at 181.051 kb on + strand, within MIT1002_00165 at 181.059 kb on - strand, within MIT1002_00165 at 181.073 kb on + strand, within MIT1002_00165 at 181.074 kb on + strand, within MIT1002_00165 at 181.074 kb on - strand, within MIT1002_00165 at 181.082 kb on - strand, within MIT1002_00165 at 181.086 kb on + strand, within MIT1002_00165 at 181.132 kb on + strand, within MIT1002_00165 at 181.139 kb on + strand, within MIT1002_00165 at 181.140 kb on - strand, within MIT1002_00165 at 181.147 kb on - strand, within MIT1002_00165 at 181.167 kb on + strand, within MIT1002_00165 at 181.169 kb on + strand, within MIT1002_00165 at 181.169 kb on + strand, within MIT1002_00165 at 181.194 kb on - strand, within MIT1002_00165 at 181.270 kb on + strand, within MIT1002_00165 at 181.279 kb on + strand, within MIT1002_00165 at 181.287 kb on - strand, within MIT1002_00165 at 181.287 kb on - strand, within MIT1002_00165 at 181.301 kb on + strand, within MIT1002_00165 at 181.309 kb on - strand, within MIT1002_00165 at 181.348 kb on + strand, within MIT1002_00165 at 181.395 kb on + strand, within MIT1002_00165 at 181.395 kb on + strand, within MIT1002_00165 at 181.400 kb on + strand, within MIT1002_00165 at 181.400 kb on + strand, within MIT1002_00165 at 181.400 kb on + strand, within MIT1002_00165 at 181.408 kb on - strand, within MIT1002_00165 at 181.457 kb on + strand, within MIT1002_00165 at 181.457 kb on + strand, within MIT1002_00165 at 181.465 kb on - strand, within MIT1002_00165 at 181.514 kb on - strand, within MIT1002_00165 at 181.611 kb on - strand, within MIT1002_00165 at 181.716 kb on + strand at 181.716 kb on + strand at 181.716 kb on + strand at 181.716 kb on + strand at 181.724 kb on - strand at 181.724 kb on - strand at 181.753 kb on + strand at 181.753 kb on + strand at 181.753 kb on + strand at 181.753 kb on + strand at 181.761 kb on - strand at 181.761 kb on - strand at 181.761 kb on - strand at 181.761 kb on - strand at 181.771 kb on - strand at 181.823 kb on - strand at 181.983 kb on + strand, within MIT1002_00166 at 181.991 kb on - strand, within MIT1002_00166 at 181.991 kb on - strand, within MIT1002_00166 at 181.991 kb on - strand, within MIT1002_00166 at 181.991 kb on - strand, within MIT1002_00166 at 181.994 kb on + strand, within MIT1002_00166 at 182.013 kb on - strand, within MIT1002_00166 at 182.057 kb on + strand, within MIT1002_00166 at 182.065 kb on - strand, within MIT1002_00166 at 182.065 kb on - strand, within MIT1002_00166 at 182.065 kb on - strand, within MIT1002_00166 at 182.067 kb on + strand, within MIT1002_00166 at 182.076 kb on + strand, within MIT1002_00166 at 182.076 kb on + strand, within MIT1002_00166 at 182.076 kb on + strand, within MIT1002_00166 at 182.076 kb on + strand, within MIT1002_00166 at 182.108 kb on + strand, within MIT1002_00166 at 182.118 kb on - strand, within MIT1002_00166 at 182.303 kb on + strand, within MIT1002_00166 at 182.351 kb on + strand, within MIT1002_00166 at 182.359 kb on + strand, within MIT1002_00166 at 182.359 kb on + strand, within MIT1002_00166 at 182.405 kb on - strand, within MIT1002_00166 at 182.415 kb on - strand, within MIT1002_00166 at 182.469 kb on - strand, within MIT1002_00166 at 182.563 kb on - strand at 182.578 kb on + strand at 182.628 kb on - strand at 183.306 kb on - strand at 183.460 kb on + strand at 183.460 kb on - strand at 183.472 kb on + strand, within MIT1002_00168 at 183.478 kb on - strand, within MIT1002_00168 at 183.478 kb on - strand, within MIT1002_00168 at 183.515 kb on + strand, within MIT1002_00168 at 183.515 kb on + strand, within MIT1002_00168 at 183.515 kb on + strand, within MIT1002_00168 at 183.515 kb on + strand, within MIT1002_00168 at 183.523 kb on - strand, within MIT1002_00168 at 183.523 kb on - strand, within MIT1002_00168 at 183.523 kb on - strand, within MIT1002_00168 at 183.545 kb on - strand, within MIT1002_00168
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6 remove 180,835 + MIT1002_00165 0.24 -0.3 180,835 + MIT1002_00165 0.24 -0.6 180,835 + MIT1002_00165 0.24 -1.5 180,835 + MIT1002_00165 0.24 +0.2 180,843 - MIT1002_00165 0.25 -0.6 180,845 - MIT1002_00165 0.25 +0.4 180,845 - MIT1002_00165 0.25 +1.1 180,907 + MIT1002_00165 0.30 +0.0 180,915 - MIT1002_00165 0.30 -2.2 180,927 - MIT1002_00165 0.31 -1.9 181,006 - MIT1002_00165 0.38 -2.2 181,016 + MIT1002_00165 0.39 -1.2 181,051 + MIT1002_00165 0.41 -0.9 181,059 - MIT1002_00165 0.42 -1.8 181,073 + MIT1002_00165 0.43 -0.8 181,074 + MIT1002_00165 0.43 +0.1 181,074 - MIT1002_00165 0.43 -0.0 181,082 - MIT1002_00165 0.44 +1.9 181,086 + MIT1002_00165 0.44 +1.8 181,132 + MIT1002_00165 0.48 -1.6 181,139 + MIT1002_00165 0.48 +0.3 181,140 - MIT1002_00165 0.49 +2.2 181,147 - MIT1002_00165 0.49 +1.1 181,167 + MIT1002_00165 0.51 -0.1 181,169 + MIT1002_00165 0.51 -0.5 181,169 + MIT1002_00165 0.51 +1.1 181,194 - MIT1002_00165 0.53 -1.5 181,270 + MIT1002_00165 0.59 -0.7 181,279 + MIT1002_00165 0.60 +0.5 181,287 - MIT1002_00165 0.60 -1.5 181,287 - MIT1002_00165 0.60 -0.6 181,301 + MIT1002_00165 0.62 -0.3 181,309 - MIT1002_00165 0.62 +0.3 181,348 + MIT1002_00165 0.65 -0.6 181,395 + MIT1002_00165 0.69 -0.9 181,395 + MIT1002_00165 0.69 -2.4 181,400 + MIT1002_00165 0.69 -0.6 181,400 + MIT1002_00165 0.69 -1.3 181,400 + MIT1002_00165 0.69 +1.5 181,408 - MIT1002_00165 0.70 -0.5 181,457 + MIT1002_00165 0.74 +2.0 181,457 + MIT1002_00165 0.74 -0.2 181,465 - MIT1002_00165 0.75 -1.9 181,514 - MIT1002_00165 0.79 -3.1 181,611 - MIT1002_00165 0.86 +0.5 181,716 + -0.2 181,716 + -0.2 181,716 + +3.4 181,716 + +1.6 181,724 - +1.6 181,724 - +1.7 181,753 + +0.8 181,753 + +0.2 181,753 + +0.1 181,753 + -0.0 181,761 - -0.3 181,761 - -2.0 181,761 - -2.0 181,761 - +1.1 181,771 - +0.5 181,823 - -1.8 181,983 + MIT1002_00166 0.21 -0.5 181,991 - MIT1002_00166 0.22 +0.8 181,991 - MIT1002_00166 0.22 +0.2 181,991 - MIT1002_00166 0.22 +0.1 181,991 - MIT1002_00166 0.22 +1.6 181,994 + MIT1002_00166 0.23 +1.1 182,013 - MIT1002_00166 0.25 +0.3 182,057 + MIT1002_00166 0.30 +2.3 182,065 - MIT1002_00166 0.31 +0.5 182,065 - MIT1002_00166 0.31 -0.0 182,065 - MIT1002_00166 0.31 -0.6 182,067 + MIT1002_00166 0.32 +0.2 182,076 + MIT1002_00166 0.33 -0.6 182,076 + MIT1002_00166 0.33 +0.1 182,076 + MIT1002_00166 0.33 -2.3 182,076 + MIT1002_00166 0.33 -2.0 182,108 + MIT1002_00166 0.37 +0.1 182,118 - MIT1002_00166 0.38 -0.7 182,303 + MIT1002_00166 0.61 -0.1 182,351 + MIT1002_00166 0.67 -1.4 182,359 + MIT1002_00166 0.68 +1.0 182,359 + MIT1002_00166 0.68 -0.3 182,405 - MIT1002_00166 0.73 +1.1 182,415 - MIT1002_00166 0.75 +0.5 182,469 - MIT1002_00166 0.81 +0.3 182,563 - +0.6 182,578 + +0.8 182,628 - -0.1 183,306 - -0.5 183,460 + +0.1 183,460 - +0.3 183,472 + MIT1002_00168 0.11 +0.6 183,478 - MIT1002_00168 0.11 -1.9 183,478 - MIT1002_00168 0.11 +0.8 183,515 + MIT1002_00168 0.14 -2.4 183,515 + MIT1002_00168 0.14 -1.5 183,515 + MIT1002_00168 0.14 -1.1 183,515 + MIT1002_00168 0.14 -1.7 183,523 - MIT1002_00168 0.14 -0.6 183,523 - MIT1002_00168 0.14 -0.3 183,523 - MIT1002_00168 0.14 -1.6 183,545 - MIT1002_00168 0.16 +0.2
Or see this region's nucleotide sequence