Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00110

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00108 and MIT1002_00109 are separated by 24 nucleotidesMIT1002_00109 and MIT1002_00110 are separated by 3 nucleotidesMIT1002_00110 and MIT1002_00111 are separated by 194 nucleotides MIT1002_00108: MIT1002_00108 - Bifunctional (p)ppGpp synthase/hydrolase SpoT, at 115,970 to 118,081 _00108 MIT1002_00109: MIT1002_00109 - Putative reactive intermediate deaminase TdcF, at 118,106 to 118,492 _00109 MIT1002_00110: MIT1002_00110 - tRNA (guanosine(18)-2'-O)-methyltransferase, at 118,496 to 119,203 _00110 MIT1002_00111: MIT1002_00111 - ATP-dependent DNA helicase RecG, at 119,398 to 121,470 _00111 Position (kb) 118 119 120Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 117.502 kb on + strand, within MIT1002_00108at 117.551 kb on - strand, within MIT1002_00108at 117.572 kb on + strand, within MIT1002_00108at 117.598 kb on + strand, within MIT1002_00108at 117.713 kb on + strand, within MIT1002_00108at 117.723 kb on - strand, within MIT1002_00108at 117.728 kb on - strand, within MIT1002_00108at 117.811 kb on - strand, within MIT1002_00108at 117.842 kb on - strand, within MIT1002_00108at 117.908 kb on - strandat 117.960 kb on - strandat 118.032 kb on - strandat 118.037 kb on - strandat 118.052 kb on - strandat 118.108 kb on + strandat 118.116 kb on + strandat 118.116 kb on - strandat 118.279 kb on + strand, within MIT1002_00109at 118.287 kb on - strand, within MIT1002_00109at 118.287 kb on - strand, within MIT1002_00109at 118.287 kb on - strand, within MIT1002_00109at 118.287 kb on - strand, within MIT1002_00109at 118.289 kb on + strand, within MIT1002_00109at 118.291 kb on + strand, within MIT1002_00109at 118.321 kb on - strand, within MIT1002_00109at 118.402 kb on + strand, within MIT1002_00109at 118.402 kb on + strand, within MIT1002_00109at 118.402 kb on + strand, within MIT1002_00109at 118.402 kb on + strand, within MIT1002_00109at 118.404 kb on - strand, within MIT1002_00109at 118.404 kb on - strand, within MIT1002_00109at 118.410 kb on - strand, within MIT1002_00109at 118.410 kb on - strand, within MIT1002_00109at 118.410 kb on - strand, within MIT1002_00109at 118.410 kb on - strand, within MIT1002_00109at 118.410 kb on - strand, within MIT1002_00109at 118.410 kb on - strand, within MIT1002_00109at 118.421 kb on + strand, within MIT1002_00109at 118.432 kb on - strand, within MIT1002_00109at 118.439 kb on - strand, within MIT1002_00109at 118.441 kb on + strand, within MIT1002_00109at 118.441 kb on + strand, within MIT1002_00109at 118.441 kb on + strand, within MIT1002_00109at 118.441 kb on + strand, within MIT1002_00109at 118.441 kb on + strand, within MIT1002_00109at 118.441 kb on + strand, within MIT1002_00109at 118.441 kb on + strand, within MIT1002_00109at 118.449 kb on - strand, within MIT1002_00109at 118.449 kb on - strand, within MIT1002_00109at 118.449 kb on - strand, within MIT1002_00109at 118.449 kb on - strand, within MIT1002_00109at 118.449 kb on - strand, within MIT1002_00109at 118.604 kb on - strand, within MIT1002_00110at 118.644 kb on - strand, within MIT1002_00110at 118.680 kb on + strand, within MIT1002_00110at 118.682 kb on + strand, within MIT1002_00110at 118.685 kb on - strand, within MIT1002_00110at 118.690 kb on - strand, within MIT1002_00110at 118.692 kb on + strand, within MIT1002_00110at 118.760 kb on + strand, within MIT1002_00110at 118.780 kb on + strand, within MIT1002_00110at 118.822 kb on + strand, within MIT1002_00110at 118.822 kb on + strand, within MIT1002_00110at 118.825 kb on - strand, within MIT1002_00110at 118.876 kb on + strand, within MIT1002_00110at 118.900 kb on - strand, within MIT1002_00110at 118.918 kb on + strand, within MIT1002_00110at 119.002 kb on + strand, within MIT1002_00110at 119.002 kb on + strand, within MIT1002_00110at 119.002 kb on + strand, within MIT1002_00110at 119.002 kb on + strand, within MIT1002_00110at 119.002 kb on + strand, within MIT1002_00110at 119.002 kb on + strand, within MIT1002_00110at 119.010 kb on - strand, within MIT1002_00110at 119.010 kb on - strand, within MIT1002_00110at 119.010 kb on - strand, within MIT1002_00110at 119.032 kb on - strand, within MIT1002_00110at 119.035 kb on - strand, within MIT1002_00110at 119.039 kb on + strand, within MIT1002_00110at 119.042 kb on - strand, within MIT1002_00110at 119.078 kb on - strand, within MIT1002_00110at 119.086 kb on + strand, within MIT1002_00110at 119.093 kb on + strand, within MIT1002_00110at 119.093 kb on + strand, within MIT1002_00110at 119.093 kb on + strand, within MIT1002_00110at 119.101 kb on - strand, within MIT1002_00110at 119.204 kb on + strandat 119.212 kb on - strandat 119.251 kb on - strandat 119.253 kb on - strandat 119.257 kb on + strandat 119.284 kb on + strandat 119.292 kb on - strandat 119.326 kb on + strandat 119.426 kb on - strandat 119.444 kb on + strandat 119.444 kb on + strandat 119.695 kb on + strand, within MIT1002_00111at 119.867 kb on + strand, within MIT1002_00111at 119.966 kb on + strand, within MIT1002_00111at 119.986 kb on - strand, within MIT1002_00111at 120.034 kb on + strand, within MIT1002_00111at 120.036 kb on + strand, within MIT1002_00111at 120.049 kb on - strand, within MIT1002_00111at 120.080 kb on + strand, within MIT1002_00111at 120.086 kb on + strand, within MIT1002_00111at 120.130 kb on + strand, within MIT1002_00111

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6
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117,502 + MIT1002_00108 0.73 +0.1
117,551 - MIT1002_00108 0.75 -1.6
117,572 + MIT1002_00108 0.76 -3.5
117,598 + MIT1002_00108 0.77 -3.7
117,713 + MIT1002_00108 0.83 -1.6
117,723 - MIT1002_00108 0.83 -1.8
117,728 - MIT1002_00108 0.83 -0.3
117,811 - MIT1002_00108 0.87 -2.3
117,842 - MIT1002_00108 0.89 -2.6
117,908 - -4.3
117,960 - -4.0
118,032 - -3.5
118,037 - -2.8
118,052 - -2.7
118,108 + -3.7
118,116 + -0.0
118,116 - -2.1
118,279 + MIT1002_00109 0.45 -2.8
118,287 - MIT1002_00109 0.47 -1.5
118,287 - MIT1002_00109 0.47 -1.3
118,287 - MIT1002_00109 0.47 -4.6
118,287 - MIT1002_00109 0.47 -0.7
118,289 + MIT1002_00109 0.47 -3.5
118,291 + MIT1002_00109 0.48 -1.8
118,321 - MIT1002_00109 0.56 -1.8
118,402 + MIT1002_00109 0.76 -0.8
118,402 + MIT1002_00109 0.76 -2.2
118,402 + MIT1002_00109 0.76 -3.4
118,402 + MIT1002_00109 0.76 -1.0
118,404 - MIT1002_00109 0.77 -0.3
118,404 - MIT1002_00109 0.77 -1.0
118,410 - MIT1002_00109 0.79 -3.0
118,410 - MIT1002_00109 0.79 -2.1
118,410 - MIT1002_00109 0.79 -4.3
118,410 - MIT1002_00109 0.79 -3.9
118,410 - MIT1002_00109 0.79 -2.2
118,410 - MIT1002_00109 0.79 -0.7
118,421 + MIT1002_00109 0.81 -0.9
118,432 - MIT1002_00109 0.84 -2.3
118,439 - MIT1002_00109 0.86 -2.6
118,441 + MIT1002_00109 0.87 -1.7
118,441 + MIT1002_00109 0.87 -0.6
118,441 + MIT1002_00109 0.87 -2.3
118,441 + MIT1002_00109 0.87 -3.2
118,441 + MIT1002_00109 0.87 -1.9
118,441 + MIT1002_00109 0.87 -1.5
118,441 + MIT1002_00109 0.87 -2.7
118,449 - MIT1002_00109 0.89 -1.9
118,449 - MIT1002_00109 0.89 -3.2
118,449 - MIT1002_00109 0.89 -1.0
118,449 - MIT1002_00109 0.89 +0.5
118,449 - MIT1002_00109 0.89 -5.9
118,604 - MIT1002_00110 0.15 -0.4
118,644 - MIT1002_00110 0.21 +0.9
118,680 + MIT1002_00110 0.26 -0.9
118,682 + MIT1002_00110 0.26 +0.4
118,685 - MIT1002_00110 0.27 +1.0
118,690 - MIT1002_00110 0.27 -2.7
118,692 + MIT1002_00110 0.28 +0.3
118,760 + MIT1002_00110 0.37 -1.0
118,780 + MIT1002_00110 0.40 +1.1
118,822 + MIT1002_00110 0.46 -1.6
118,822 + MIT1002_00110 0.46 -2.0
118,825 - MIT1002_00110 0.46 -0.5
118,876 + MIT1002_00110 0.54 -1.9
118,900 - MIT1002_00110 0.57 -0.6
118,918 + MIT1002_00110 0.60 +0.8
119,002 + MIT1002_00110 0.71 +0.8
119,002 + MIT1002_00110 0.71 +0.7
119,002 + MIT1002_00110 0.71 +1.5
119,002 + MIT1002_00110 0.71 -1.8
119,002 + MIT1002_00110 0.71 -1.6
119,002 + MIT1002_00110 0.71 +1.7
119,010 - MIT1002_00110 0.73 -0.0
119,010 - MIT1002_00110 0.73 -0.7
119,010 - MIT1002_00110 0.73 +0.1
119,032 - MIT1002_00110 0.76 +1.0
119,035 - MIT1002_00110 0.76 -0.2
119,039 + MIT1002_00110 0.77 +1.0
119,042 - MIT1002_00110 0.77 -1.1
119,078 - MIT1002_00110 0.82 -0.3
119,086 + MIT1002_00110 0.83 -0.4
119,093 + MIT1002_00110 0.84 -1.1
119,093 + MIT1002_00110 0.84 -0.4
119,093 + MIT1002_00110 0.84 +1.9
119,101 - MIT1002_00110 0.85 -0.0
119,204 + +1.3
119,212 - -0.7
119,251 - -0.6
119,253 - -0.2
119,257 + +2.0
119,284 + +0.1
119,292 - -2.6
119,326 + +1.9
119,426 - -2.8
119,444 + -0.2
119,444 + -0.3
119,695 + MIT1002_00111 0.14 -0.2
119,867 + MIT1002_00111 0.23 -0.4
119,966 + MIT1002_00111 0.27 -1.0
119,986 - MIT1002_00111 0.28 -1.1
120,034 + MIT1002_00111 0.31 -0.7
120,036 + MIT1002_00111 0.31 -0.0
120,049 - MIT1002_00111 0.31 +0.3
120,080 + MIT1002_00111 0.33 -0.3
120,086 + MIT1002_00111 0.33 -2.0
120,130 + MIT1002_00111 0.35 -1.0

Or see this region's nucleotide sequence