Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00086 and MIT1002_00087 are separated by 213 nucleotides MIT1002_00087 and MIT1002_00088 are separated by 137 nucleotides
MIT1002_00086: MIT1002_00086 - (R)-benzylsuccinyl-CoA dehydrogenase, at 92,569 to 93,789
_00086
MIT1002_00087: MIT1002_00087 - hypothetical protein, at 94,003 to 94,926
_00087
MIT1002_00088: MIT1002_00088 - hydroxyacylglutathione hydrolase, at 95,064 to 95,825
_00088
Position (kb) 94
95 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 93.021 kb on - strand, within MIT1002_00086 at 93.033 kb on - strand, within MIT1002_00086 at 93.051 kb on - strand, within MIT1002_00086 at 93.058 kb on - strand, within MIT1002_00086 at 93.100 kb on + strand, within MIT1002_00086 at 93.161 kb on + strand, within MIT1002_00086 at 93.161 kb on + strand, within MIT1002_00086 at 93.187 kb on - strand, within MIT1002_00086 at 93.187 kb on - strand, within MIT1002_00086 at 93.212 kb on + strand, within MIT1002_00086 at 93.232 kb on - strand, within MIT1002_00086 at 93.245 kb on + strand, within MIT1002_00086 at 93.253 kb on - strand, within MIT1002_00086 at 93.253 kb on - strand, within MIT1002_00086 at 93.253 kb on - strand, within MIT1002_00086 at 93.255 kb on + strand, within MIT1002_00086 at 93.256 kb on + strand, within MIT1002_00086 at 93.256 kb on + strand, within MIT1002_00086 at 93.256 kb on + strand, within MIT1002_00086 at 93.256 kb on + strand, within MIT1002_00086 at 93.256 kb on + strand, within MIT1002_00086 at 93.264 kb on - strand, within MIT1002_00086 at 93.264 kb on - strand, within MIT1002_00086 at 93.264 kb on - strand, within MIT1002_00086 at 93.305 kb on - strand, within MIT1002_00086 at 93.353 kb on + strand, within MIT1002_00086 at 93.353 kb on + strand, within MIT1002_00086 at 93.393 kb on - strand, within MIT1002_00086 at 93.527 kb on + strand, within MIT1002_00086 at 93.540 kb on + strand, within MIT1002_00086 at 93.555 kb on + strand, within MIT1002_00086 at 93.555 kb on + strand, within MIT1002_00086 at 93.555 kb on + strand, within MIT1002_00086 at 93.556 kb on + strand, within MIT1002_00086 at 93.556 kb on + strand, within MIT1002_00086 at 93.564 kb on - strand, within MIT1002_00086 at 93.564 kb on - strand, within MIT1002_00086 at 93.564 kb on - strand, within MIT1002_00086 at 93.592 kb on + strand, within MIT1002_00086 at 93.592 kb on + strand, within MIT1002_00086 at 93.592 kb on + strand, within MIT1002_00086 at 93.600 kb on - strand, within MIT1002_00086 at 93.600 kb on - strand, within MIT1002_00086 at 93.620 kb on - strand, within MIT1002_00086 at 93.640 kb on - strand, within MIT1002_00086 at 93.826 kb on - strand at 94.101 kb on - strand, within MIT1002_00087 at 94.142 kb on + strand, within MIT1002_00087 at 94.142 kb on + strand, within MIT1002_00087 at 94.142 kb on + strand, within MIT1002_00087 at 94.150 kb on - strand, within MIT1002_00087 at 94.150 kb on - strand, within MIT1002_00087 at 94.288 kb on + strand, within MIT1002_00087 at 94.296 kb on - strand, within MIT1002_00087 at 94.308 kb on - strand, within MIT1002_00087 at 94.339 kb on - strand, within MIT1002_00087 at 94.344 kb on + strand, within MIT1002_00087 at 94.362 kb on - strand, within MIT1002_00087 at 94.367 kb on - strand, within MIT1002_00087 at 94.507 kb on + strand, within MIT1002_00087 at 94.507 kb on + strand, within MIT1002_00087 at 94.515 kb on - strand, within MIT1002_00087 at 94.515 kb on - strand, within MIT1002_00087 at 94.515 kb on - strand, within MIT1002_00087 at 94.523 kb on + strand, within MIT1002_00087 at 94.523 kb on + strand, within MIT1002_00087 at 94.523 kb on + strand, within MIT1002_00087 at 94.589 kb on - strand, within MIT1002_00087 at 94.598 kb on + strand, within MIT1002_00087 at 94.606 kb on + strand, within MIT1002_00087 at 94.683 kb on - strand, within MIT1002_00087 at 94.696 kb on - strand, within MIT1002_00087 at 94.725 kb on + strand, within MIT1002_00087 at 94.732 kb on - strand, within MIT1002_00087 at 94.733 kb on - strand, within MIT1002_00087 at 94.733 kb on - strand, within MIT1002_00087 at 94.744 kb on + strand, within MIT1002_00087 at 94.793 kb on - strand, within MIT1002_00087 at 94.864 kb on + strand at 94.873 kb on - strand at 94.943 kb on + strand at 94.972 kb on - strand at 95.005 kb on - strand at 95.085 kb on - strand at 95.109 kb on + strand at 95.117 kb on - strand at 95.157 kb on + strand, within MIT1002_00088 at 95.191 kb on + strand, within MIT1002_00088 at 95.191 kb on + strand, within MIT1002_00088 at 95.212 kb on + strand, within MIT1002_00088 at 95.212 kb on + strand, within MIT1002_00088 at 95.235 kb on + strand, within MIT1002_00088 at 95.255 kb on - strand, within MIT1002_00088 at 95.297 kb on - strand, within MIT1002_00088 at 95.349 kb on + strand, within MIT1002_00088 at 95.356 kb on + strand, within MIT1002_00088 at 95.382 kb on - strand, within MIT1002_00088 at 95.433 kb on - strand, within MIT1002_00088 at 95.442 kb on + strand, within MIT1002_00088 at 95.501 kb on - strand, within MIT1002_00088 at 95.507 kb on + strand, within MIT1002_00088 at 95.515 kb on - strand, within MIT1002_00088 at 95.515 kb on - strand, within MIT1002_00088 at 95.550 kb on - strand, within MIT1002_00088 at 95.582 kb on + strand, within MIT1002_00088 at 95.582 kb on + strand, within MIT1002_00088 at 95.590 kb on - strand, within MIT1002_00088 at 95.762 kb on - strand at 95.878 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6 remove 93,021 - MIT1002_00086 0.37 -0.6 93,033 - MIT1002_00086 0.38 +2.7 93,051 - MIT1002_00086 0.39 -0.3 93,058 - MIT1002_00086 0.40 -1.1 93,100 + MIT1002_00086 0.43 +1.4 93,161 + MIT1002_00086 0.48 -2.9 93,161 + MIT1002_00086 0.48 -0.6 93,187 - MIT1002_00086 0.51 -1.3 93,187 - MIT1002_00086 0.51 -0.4 93,212 + MIT1002_00086 0.53 +1.5 93,232 - MIT1002_00086 0.54 +2.1 93,245 + MIT1002_00086 0.55 +0.9 93,253 - MIT1002_00086 0.56 -1.6 93,253 - MIT1002_00086 0.56 -2.0 93,253 - MIT1002_00086 0.56 -0.5 93,255 + MIT1002_00086 0.56 -1.2 93,256 + MIT1002_00086 0.56 -2.5 93,256 + MIT1002_00086 0.56 -1.6 93,256 + MIT1002_00086 0.56 -0.7 93,256 + MIT1002_00086 0.56 -1.4 93,256 + MIT1002_00086 0.56 +0.3 93,264 - MIT1002_00086 0.57 -2.0 93,264 - MIT1002_00086 0.57 -1.6 93,264 - MIT1002_00086 0.57 +0.4 93,305 - MIT1002_00086 0.60 -0.6 93,353 + MIT1002_00086 0.64 +1.0 93,353 + MIT1002_00086 0.64 -1.0 93,393 - MIT1002_00086 0.67 +0.8 93,527 + MIT1002_00086 0.78 +0.8 93,540 + MIT1002_00086 0.80 +0.5 93,555 + MIT1002_00086 0.81 +0.0 93,555 + MIT1002_00086 0.81 -1.0 93,555 + MIT1002_00086 0.81 -0.7 93,556 + MIT1002_00086 0.81 -1.1 93,556 + MIT1002_00086 0.81 -1.6 93,564 - MIT1002_00086 0.81 -2.6 93,564 - MIT1002_00086 0.81 -0.5 93,564 - MIT1002_00086 0.81 -0.2 93,592 + MIT1002_00086 0.84 -1.6 93,592 + MIT1002_00086 0.84 +1.1 93,592 + MIT1002_00086 0.84 -0.9 93,600 - MIT1002_00086 0.84 +1.4 93,600 - MIT1002_00086 0.84 +1.5 93,620 - MIT1002_00086 0.86 +0.7 93,640 - MIT1002_00086 0.88 -2.2 93,826 - -2.4 94,101 - MIT1002_00087 0.11 -1.3 94,142 + MIT1002_00087 0.15 +0.1 94,142 + MIT1002_00087 0.15 +1.0 94,142 + MIT1002_00087 0.15 -0.0 94,150 - MIT1002_00087 0.16 +0.1 94,150 - MIT1002_00087 0.16 -1.3 94,288 + MIT1002_00087 0.31 +3.0 94,296 - MIT1002_00087 0.32 -0.3 94,308 - MIT1002_00087 0.33 -0.9 94,339 - MIT1002_00087 0.36 +1.9 94,344 + MIT1002_00087 0.37 -0.4 94,362 - MIT1002_00087 0.39 -0.3 94,367 - MIT1002_00087 0.39 -3.2 94,507 + MIT1002_00087 0.55 +0.5 94,507 + MIT1002_00087 0.55 -1.5 94,515 - MIT1002_00087 0.55 +0.5 94,515 - MIT1002_00087 0.55 +2.0 94,515 - MIT1002_00087 0.55 -1.4 94,523 + MIT1002_00087 0.56 -0.7 94,523 + MIT1002_00087 0.56 -1.8 94,523 + MIT1002_00087 0.56 -1.0 94,589 - MIT1002_00087 0.63 -0.6 94,598 + MIT1002_00087 0.64 +1.2 94,606 + MIT1002_00087 0.65 -0.1 94,683 - MIT1002_00087 0.74 +0.6 94,696 - MIT1002_00087 0.75 -0.6 94,725 + MIT1002_00087 0.78 +1.2 94,732 - MIT1002_00087 0.79 -0.6 94,733 - MIT1002_00087 0.79 +0.1 94,733 - MIT1002_00087 0.79 -0.5 94,744 + MIT1002_00087 0.80 +2.2 94,793 - MIT1002_00087 0.85 -0.1 94,864 + +0.6 94,873 - -0.6 94,943 + +1.5 94,972 - -1.0 95,005 - -0.2 95,085 - -0.2 95,109 + -1.3 95,117 - -0.2 95,157 + MIT1002_00088 0.12 -0.2 95,191 + MIT1002_00088 0.17 -0.1 95,191 + MIT1002_00088 0.17 +0.3 95,212 + MIT1002_00088 0.19 -2.6 95,212 + MIT1002_00088 0.19 +0.1 95,235 + MIT1002_00088 0.22 -0.5 95,255 - MIT1002_00088 0.25 -1.4 95,297 - MIT1002_00088 0.31 -1.9 95,349 + MIT1002_00088 0.37 -3.3 95,356 + MIT1002_00088 0.38 +0.1 95,382 - MIT1002_00088 0.42 +2.3 95,433 - MIT1002_00088 0.48 +0.2 95,442 + MIT1002_00088 0.50 -1.1 95,501 - MIT1002_00088 0.57 +1.5 95,507 + MIT1002_00088 0.58 +1.1 95,515 - MIT1002_00088 0.59 +0.8 95,515 - MIT1002_00088 0.59 -0.0 95,550 - MIT1002_00088 0.64 -1.5 95,582 + MIT1002_00088 0.68 -1.1 95,582 + MIT1002_00088 0.68 +0.0 95,590 - MIT1002_00088 0.69 -0.9 95,762 - -0.3 95,878 + -1.4
Or see this region's nucleotide sequence