Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00079

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMIT1002_00078 and MIT1002_00079 are separated by 139 nucleotidesMIT1002_00079 and MIT1002_00080 are separated by 135 nucleotidesMIT1002_00080 and MIT1002_00081 are separated by 330 nucleotides MIT1002_00078: MIT1002_00078 - Glycine betaine transporter OpuD, at 83,715 to 85,484 _00078 MIT1002_00079: MIT1002_00079 - hypothetical protein, at 85,624 to 86,253 _00079 MIT1002_00080: MIT1002_00080 - hypothetical protein, at 86,389 to 86,637 _00080 MIT1002_00081: MIT1002_00081 - HNH endonuclease, at 86,968 to 87,387 _00081 Position (kb) 85 86 87Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 84.627 kb on + strand, within MIT1002_00078at 84.639 kb on + strand, within MIT1002_00078at 84.670 kb on + strand, within MIT1002_00078at 84.678 kb on - strand, within MIT1002_00078at 84.678 kb on - strand, within MIT1002_00078at 84.732 kb on + strand, within MIT1002_00078at 84.732 kb on + strand, within MIT1002_00078at 84.750 kb on - strand, within MIT1002_00078at 84.756 kb on + strand, within MIT1002_00078at 84.801 kb on - strand, within MIT1002_00078at 84.801 kb on - strand, within MIT1002_00078at 84.910 kb on - strand, within MIT1002_00078at 84.914 kb on + strand, within MIT1002_00078at 85.002 kb on - strand, within MIT1002_00078at 85.023 kb on + strand, within MIT1002_00078at 85.031 kb on - strand, within MIT1002_00078at 85.201 kb on + strand, within MIT1002_00078at 85.201 kb on + strand, within MIT1002_00078at 85.233 kb on + strand, within MIT1002_00078at 85.233 kb on + strand, within MIT1002_00078at 85.259 kb on - strand, within MIT1002_00078at 85.279 kb on + strand, within MIT1002_00078at 85.290 kb on + strand, within MIT1002_00078at 85.350 kb on + strandat 85.360 kb on + strandat 85.388 kb on + strandat 85.418 kb on + strandat 85.463 kb on + strandat 85.463 kb on + strandat 85.463 kb on - strandat 85.471 kb on - strandat 85.582 kb on + strandat 85.679 kb on - strandat 85.912 kb on - strand, within MIT1002_00079at 85.913 kb on + strand, within MIT1002_00079at 85.987 kb on + strand, within MIT1002_00079at 85.997 kb on + strand, within MIT1002_00079at 85.997 kb on + strand, within MIT1002_00079at 86.051 kb on + strand, within MIT1002_00079at 86.051 kb on + strand, within MIT1002_00079at 86.106 kb on + strand, within MIT1002_00079at 86.114 kb on - strand, within MIT1002_00079at 86.120 kb on + strand, within MIT1002_00079at 86.125 kb on + strand, within MIT1002_00079at 86.131 kb on + strand, within MIT1002_00079at 86.131 kb on + strand, within MIT1002_00079at 86.131 kb on + strand, within MIT1002_00079at 86.133 kb on - strand, within MIT1002_00079at 86.133 kb on - strand, within MIT1002_00079at 86.139 kb on - strand, within MIT1002_00079at 86.235 kb on + strandat 86.247 kb on + strandat 86.263 kb on - strandat 86.290 kb on - strandat 86.297 kb on - strandat 86.307 kb on - strandat 86.350 kb on - strandat 86.352 kb on + strandat 86.386 kb on + strandat 86.526 kb on + strand, within MIT1002_00080at 86.606 kb on + strand, within MIT1002_00080at 86.606 kb on + strand, within MIT1002_00080at 86.606 kb on + strand, within MIT1002_00080at 86.614 kb on - strandat 86.638 kb on + strandat 86.638 kb on + strandat 86.651 kb on - strandat 86.745 kb on + strandat 86.747 kb on - strandat 86.773 kb on + strandat 86.781 kb on - strandat 86.795 kb on + strandat 86.836 kb on + strandat 86.844 kb on - strandat 86.894 kb on + strandat 86.938 kb on - strandat 86.961 kb on - strandat 86.966 kb on + strandat 86.966 kb on + strandat 86.966 kb on + strandat 86.966 kb on + strandat 86.966 kb on + strandat 86.966 kb on + strandat 86.974 kb on - strandat 86.974 kb on - strandat 86.986 kb on - strandat 86.986 kb on - strandat 87.026 kb on + strand, within MIT1002_00081at 87.047 kb on + strand, within MIT1002_00081at 87.049 kb on + strand, within MIT1002_00081at 87.056 kb on - strand, within MIT1002_00081at 87.238 kb on - strand, within MIT1002_00081at 87.243 kb on - strand, within MIT1002_00081

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6
remove
84,627 + MIT1002_00078 0.52 +0.5
84,639 + MIT1002_00078 0.52 +0.1
84,670 + MIT1002_00078 0.54 -0.3
84,678 - MIT1002_00078 0.54 -0.3
84,678 - MIT1002_00078 0.54 +0.4
84,732 + MIT1002_00078 0.57 +1.1
84,732 + MIT1002_00078 0.57 -1.1
84,750 - MIT1002_00078 0.58 -0.2
84,756 + MIT1002_00078 0.59 +0.7
84,801 - MIT1002_00078 0.61 -1.7
84,801 - MIT1002_00078 0.61 +0.2
84,910 - MIT1002_00078 0.68 +0.3
84,914 + MIT1002_00078 0.68 -1.0
85,002 - MIT1002_00078 0.73 +0.0
85,023 + MIT1002_00078 0.74 -2.5
85,031 - MIT1002_00078 0.74 +0.7
85,201 + MIT1002_00078 0.84 +1.6
85,201 + MIT1002_00078 0.84 -1.7
85,233 + MIT1002_00078 0.86 -0.6
85,233 + MIT1002_00078 0.86 +0.3
85,259 - MIT1002_00078 0.87 +0.4
85,279 + MIT1002_00078 0.88 -0.1
85,290 + MIT1002_00078 0.89 +0.6
85,350 + -0.0
85,360 + +0.4
85,388 + +1.8
85,418 + -0.2
85,463 + +0.3
85,463 + -2.9
85,463 - -1.4
85,471 - +0.2
85,582 + -0.4
85,679 - +0.4
85,912 - MIT1002_00079 0.46 +0.8
85,913 + MIT1002_00079 0.46 +3.4
85,987 + MIT1002_00079 0.58 -0.3
85,997 + MIT1002_00079 0.59 -0.8
85,997 + MIT1002_00079 0.59 -0.2
86,051 + MIT1002_00079 0.68 -0.1
86,051 + MIT1002_00079 0.68 -0.7
86,106 + MIT1002_00079 0.77 +0.5
86,114 - MIT1002_00079 0.78 -2.5
86,120 + MIT1002_00079 0.79 +0.0
86,125 + MIT1002_00079 0.80 +0.6
86,131 + MIT1002_00079 0.80 -3.4
86,131 + MIT1002_00079 0.80 -1.3
86,131 + MIT1002_00079 0.80 -1.2
86,133 - MIT1002_00079 0.81 -0.2
86,133 - MIT1002_00079 0.81 -0.3
86,139 - MIT1002_00079 0.82 -2.0
86,235 + +0.2
86,247 + -0.7
86,263 - -0.6
86,290 - +0.6
86,297 - +0.2
86,307 - -0.3
86,350 - +0.2
86,352 + -0.9
86,386 + -0.6
86,526 + MIT1002_00080 0.55 +0.3
86,606 + MIT1002_00080 0.87 +1.0
86,606 + MIT1002_00080 0.87 -0.9
86,606 + MIT1002_00080 0.87 -0.8
86,614 - -0.4
86,638 + -0.9
86,638 + -0.2
86,651 - -0.1
86,745 + +1.2
86,747 - -2.1
86,773 + -1.1
86,781 - -2.4
86,795 + +0.1
86,836 + +1.2
86,844 - -1.6
86,894 + -1.1
86,938 - -1.8
86,961 - -1.3
86,966 + -1.1
86,966 + -1.9
86,966 + -2.0
86,966 + +0.7
86,966 + -0.4
86,966 + -0.5
86,974 - -0.3
86,974 - -1.1
86,986 - +0.0
86,986 - -0.0
87,026 + MIT1002_00081 0.14 +0.6
87,047 + MIT1002_00081 0.19 +0.3
87,049 + MIT1002_00081 0.19 +2.0
87,056 - MIT1002_00081 0.21 +0.1
87,238 - MIT1002_00081 0.64 +0.1
87,243 - MIT1002_00081 0.65 -0.1

Or see this region's nucleotide sequence